BDGP Sequence Production Resources |
Search the DGRC for RE67266
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 672 |
Well: | 66 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Chi-RB |
Protein status: | RE67266.pep: gold |
Sequenced Size: | 2142 |
Gene | Date | Evidence |
---|---|---|
Chi | 2009-10-21 | Manual selection by Sue Celniker |
2142 bp assembled on 2010-06-04
GenBank Submission: BT125015.1
> RE67266.complete GGCAGCGTTTTCCATTTCGAACGCGAACGGGCCGTGAAAAGTGTGTGTGT GTACACACATATTTTGTAAATGCAGTGCGACATACAGACAAGCCGACGCG AATGCCCGATAGAACCGACCACAGGCATGAATCGTAGGGGTTTGAACGCT GGCAATACGATGACTTCTCAAGCGAACATTGACGACGGCAGCTGGAAGGC GGTCTCCGAGGGCGGATCAATGCTGCCCGCGTCCAATTCGGCGGTCCTCA ATCCGGACGGGAGCAACCAGAGCGGCTTCGCGCAGGGCGGCCTGCCGTAC AACTCGGCCGGGAATCCGTACCCGCCCGCCGGCCAATCCTCGCCAGCCGG CAACCAGTCCATCGTGTTCCAGAACTCCAACCAGCCTGGCTCGAACACAC CTCAGTATACCTCCTCACCTGCTCCCTCGGGCTCATCGACACCCGGACCT GTTGGTGCGCAGAACATTCCCGGCAACTACCCGCAGTCGGCGACGGCGGG CAATTTCAATGGTCCAGTTGGCGGGCCCTTCGGCTCGCCATCCTCGGGAC TCGGCCAGTTCAGCCGGCCGGCCAGCTCGGGCACTCCGTTTAACAGTGGC CAGGCCGGGCACTTCTCATCGCCCACGGTATTCAGCGTTGGCGGGCAATT CAATCCGATGCCGCCGGCGTCGCCATTCGGCCACGGAGGCAACCACCCGA TGATGGGCGGGCCGCAGCAGATGGAACGCATCGACCAGGGCTTCAGGCGG CACAATTCCTACTTTAGCCACACGGAACACCGCGTCTTTGAGCTAAACAA GCGGCTGCAGCAGCGCAACGAGGAGAGCGACAACTGCTGGTGGGACTCGT TTACCACGGAGTTCTTCGAGGATGATGCCCGGCTGACCATTCTGTTCTGC CTGGAGGACGGACCGAAGCGGTACACCATCGGGCGCACGCTCATCCCGCG CTTCTTCCGCAGCATATACGAGGGCGGCGTTTCGGACCTGTACTTTCAGC TGAAGCATGCCAAGGAGTCGTTCCACAACACGTCCATCACGTTGGACTGC GACCAGTGCACGGTGATCACGCAGCACGGCAAGCCCTTCTTCACGAAGGT CTGCGCCGACGCAAGACTGATCTTGGAGTTCATGTACGACGACTACATGC GCATCAAGTCATGGCACATGACCATCAAGGGACACCGCGAGCTCATTCCA AGGTCCGTGATCGGCACCAGTCTGCCGCCTGACCCGATGCTGCTAGATCA AATAACCAAGAACATCACGCGCGCTGGCATCACCAACTCCACCCTCAACT ATCTGCGCCTCTGCGTCATCCTCGAACCGATGCAGGAGCTGATGTCGCGG CACAAGGCGTACGCACTGAGTCCGCGCGACTGCCTGAAGACAACGTTGTT CCAGAAGTGGCAGCGCATGGTGGCTCCGCCCGGCAAGAAGGATCCGCAAC GACCACCCAACAAGAGGCGCAAACGGAAGGGCTCCAATTCGGGTGGTGGC AACAACTCGAACACTCCGCCTGTGACGAACCAGAAGCGTTCCCCCTCCGG TCCCAGTTTCTCCCTCTCCTCCCAGGACGTGATGGTGGTGGGCGAGCCGA CGCTGATGGGCGGCGAGTTTGGTGAGGAGGACGAGCGGCTGATCACCCGG CTAGAGAACACGCAATACGACGGAACCAATGCCGTGGAGCACGATAATCA CACCGGCTTTGGACACGCCGACTCGCCCATATCCGGCTCGAATCCGTGGA GCATCGACCGGGCGGGAGCCATCCCGGCCAGCCCTGGGAACGGAGCTGCC CCGCAGAACAACGCGAATATATCTGACATAGATAAAAAGAGCCCCATTGT ATCGCAATAGAACTTAATAAAACATAATATTTCGCTATATTGTCAAATGT ATTTTCATACTTGCATGTAAAAATATTTAAATAAAGCTTTCAAGTTTTAG GAAATGTATATAAGACATACATACATATTAAATCTATATAATTGTACCTT AAGTCGTCTACTCTACACACTATCTATTATAATTAATTAAACCGTAGGAT ACTTCTGTTCTTGTCTTGACTGCCTTGCAAAGTACTTAATGTGTTGTTTT AGTAAAACATAACTTTTAAGCACAACAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19917573..19919607 | 92..2126 | 99 | <- | Minus |
chr2R | 19919714..19919803 | 1..91 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 1..1791 | 70..1860 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 1..1791 | 70..1860 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 1..1791 | 70..1860 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 1..1791 | 70..1860 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 1..2124 | 2..2125 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 1..2124 | 2..2125 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 1..2125 | 2..2126 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 1..2125 | 2..2126 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24031538..24033572 | 92..2126 | 99 | <- | Minus |
2R | 24033679..24033768 | 1..91 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24031538..24033572 | 92..2126 | 99 | <- | Minus |
2R | 24033679..24033768 | 1..91 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24031538..24033572 | 92..2126 | 99 | <- | Minus |
2R | 24033679..24033768 | 1..91 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19919061..19921095 | 92..2126 | 99 | <- | Minus |
arm_2R | 19921202..19921291 | 1..91 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24032755..24034789 | 92..2126 | 99 | <- | Minus |
2R | 24034896..24034985 | 1..91 | 98 | Minus |
Translation from 69 to 1859
> RE67266.pep MQCDIQTSRRECPIEPTTGMNRRGLNAGNTMTSQANIDDGSWKAVSEGGS MLPASNSAVLNPDGSNQSGFAQGGLPYNSAGNPYPPAGQSSPAGNQSIVF QNSNQPGSNTPQYTSSPAPSGSSTPGPVGAQNIPGNYPQSATAGNFNGPV GGPFGSPSSGLGQFSRPASSGTPFNSGQAGHFSSPTVFSVGGQFNPMPPA SPFGHGGNHPMMGGPQQMERIDQGFRRHNSYFSHTEHRVFELNKRLQQRN EESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRYTIGRTLIPRFFRSIY EGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVCADARL ILEFMYDDYMRIKSWHMTIKGHRELIPRSVIGTSLPPDPMLLDQITKNIT RAGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRM VAPPGKKDPQRPPNKRRKRKGSNSGGGNNSNTPPVTNQKRSPSGPSFSLS SQDVMVVGEPTLMGGEFGEEDERLITRLENTQYDGTNAVEHDNHTGFGHA DSPISGSNPWSIDRAGAIPASPGNGAAPQNNANISDIDKKSPIVSQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12038-PA | 577 | GF12038-PA | 1..577 | 20..596 | 3027 | 97.7 | Plus |
Dana\GF19017-PA | 218 | GF19017-PA | 79..203 | 217..341 | 663 | 93.6 | Plus |
Dana\GF19019-PA | 99 | GF19019-PA | 37..98 | 460..521 | 238 | 91.9 | Plus |
Dana\GF19018-PA | 54 | GF19018-PA | 1..40 | 360..399 | 195 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19962-PA | 596 | GG19962-PA | 1..596 | 1..596 | 3175 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21714-PA | 579 | GH21714-PA | 1..579 | 20..596 | 2826 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Chi-PB | 596 | CG3924-PB | 1..596 | 1..596 | 3215 | 100 | Plus |
Chi-PA | 577 | CG3924-PA | 1..577 | 20..596 | 3109 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18855-PA | 548 | GI18855-PA | 1..548 | 51..596 | 2741 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10430-PA | 567 | GL10430-PA | 1..567 | 31..596 | 2954 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17778-PA | 567 | GA17778-PA | 1..567 | 31..596 | 2959 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18282-PA | 596 | GM18282-PA | 1..596 | 1..596 | 3183 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24979-PA | 596 | GD24979-PA | 1..596 | 1..596 | 3187 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20439-PA | 579 | GJ20439-PA | 1..579 | 20..596 | 2903 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21383-PA | 584 | GK21383-PA | 1..584 | 20..596 | 2935 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11494-PA | 596 | GE11494-PA | 1..596 | 1..596 | 3175 | 99.5 | Plus |
Translation from 69 to 1859
> RE67266.hyp MQCDIQTSRRECPIEPTTGMNRRGLNAGNTMTSQANIDDGSWKAVSEGGS MLPASNSAVLNPDGSNQSGFAQGGLPYNSAGNPYPPAGQSSPAGNQSIVF QNSNQPGSNTPQYTSSPAPSGSSTPGPVGAQNIPGNYPQSATAGNFNGPV GGPFGSPSSGLGQFSRPASSGTPFNSGQAGHFSSPTVFSVGGQFNPMPPA SPFGHGGNHPMMGGPQQMERIDQGFRRHNSYFSHTEHRVFELNKRLQQRN EESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRYTIGRTLIPRFFRSIY EGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVCADARL ILEFMYDDYMRIKSWHMTIKGHRELIPRSVIGTSLPPDPMLLDQITKNIT RAGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRM VAPPGKKDPQRPPNKRRKRKGSNSGGGNNSNTPPVTNQKRSPSGPSFSLS SQDVMVVGEPTLMGGEFGEEDERLITRLENTQYDGTNAVEHDNHTGFGHA DSPISGSNPWSIDRAGAIPASPGNGAAPQNNANISDIDKKSPIVSQ*