Clone RE67266 Report

Search the DGRC for RE67266

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:672
Well:66
Vector:pFlc-1
Associated Gene/TranscriptChi-RB
Protein status:RE67266.pep: gold
Sequenced Size:2142

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Chi 2009-10-21 Manual selection by Sue Celniker

Clone Sequence Records

RE67266.complete Sequence

2142 bp assembled on 2010-06-04

GenBank Submission: BT125015.1

> RE67266.complete
GGCAGCGTTTTCCATTTCGAACGCGAACGGGCCGTGAAAAGTGTGTGTGT
GTACACACATATTTTGTAAATGCAGTGCGACATACAGACAAGCCGACGCG
AATGCCCGATAGAACCGACCACAGGCATGAATCGTAGGGGTTTGAACGCT
GGCAATACGATGACTTCTCAAGCGAACATTGACGACGGCAGCTGGAAGGC
GGTCTCCGAGGGCGGATCAATGCTGCCCGCGTCCAATTCGGCGGTCCTCA
ATCCGGACGGGAGCAACCAGAGCGGCTTCGCGCAGGGCGGCCTGCCGTAC
AACTCGGCCGGGAATCCGTACCCGCCCGCCGGCCAATCCTCGCCAGCCGG
CAACCAGTCCATCGTGTTCCAGAACTCCAACCAGCCTGGCTCGAACACAC
CTCAGTATACCTCCTCACCTGCTCCCTCGGGCTCATCGACACCCGGACCT
GTTGGTGCGCAGAACATTCCCGGCAACTACCCGCAGTCGGCGACGGCGGG
CAATTTCAATGGTCCAGTTGGCGGGCCCTTCGGCTCGCCATCCTCGGGAC
TCGGCCAGTTCAGCCGGCCGGCCAGCTCGGGCACTCCGTTTAACAGTGGC
CAGGCCGGGCACTTCTCATCGCCCACGGTATTCAGCGTTGGCGGGCAATT
CAATCCGATGCCGCCGGCGTCGCCATTCGGCCACGGAGGCAACCACCCGA
TGATGGGCGGGCCGCAGCAGATGGAACGCATCGACCAGGGCTTCAGGCGG
CACAATTCCTACTTTAGCCACACGGAACACCGCGTCTTTGAGCTAAACAA
GCGGCTGCAGCAGCGCAACGAGGAGAGCGACAACTGCTGGTGGGACTCGT
TTACCACGGAGTTCTTCGAGGATGATGCCCGGCTGACCATTCTGTTCTGC
CTGGAGGACGGACCGAAGCGGTACACCATCGGGCGCACGCTCATCCCGCG
CTTCTTCCGCAGCATATACGAGGGCGGCGTTTCGGACCTGTACTTTCAGC
TGAAGCATGCCAAGGAGTCGTTCCACAACACGTCCATCACGTTGGACTGC
GACCAGTGCACGGTGATCACGCAGCACGGCAAGCCCTTCTTCACGAAGGT
CTGCGCCGACGCAAGACTGATCTTGGAGTTCATGTACGACGACTACATGC
GCATCAAGTCATGGCACATGACCATCAAGGGACACCGCGAGCTCATTCCA
AGGTCCGTGATCGGCACCAGTCTGCCGCCTGACCCGATGCTGCTAGATCA
AATAACCAAGAACATCACGCGCGCTGGCATCACCAACTCCACCCTCAACT
ATCTGCGCCTCTGCGTCATCCTCGAACCGATGCAGGAGCTGATGTCGCGG
CACAAGGCGTACGCACTGAGTCCGCGCGACTGCCTGAAGACAACGTTGTT
CCAGAAGTGGCAGCGCATGGTGGCTCCGCCCGGCAAGAAGGATCCGCAAC
GACCACCCAACAAGAGGCGCAAACGGAAGGGCTCCAATTCGGGTGGTGGC
AACAACTCGAACACTCCGCCTGTGACGAACCAGAAGCGTTCCCCCTCCGG
TCCCAGTTTCTCCCTCTCCTCCCAGGACGTGATGGTGGTGGGCGAGCCGA
CGCTGATGGGCGGCGAGTTTGGTGAGGAGGACGAGCGGCTGATCACCCGG
CTAGAGAACACGCAATACGACGGAACCAATGCCGTGGAGCACGATAATCA
CACCGGCTTTGGACACGCCGACTCGCCCATATCCGGCTCGAATCCGTGGA
GCATCGACCGGGCGGGAGCCATCCCGGCCAGCCCTGGGAACGGAGCTGCC
CCGCAGAACAACGCGAATATATCTGACATAGATAAAAAGAGCCCCATTGT
ATCGCAATAGAACTTAATAAAACATAATATTTCGCTATATTGTCAAATGT
ATTTTCATACTTGCATGTAAAAATATTTAAATAAAGCTTTCAAGTTTTAG
GAAATGTATATAAGACATACATACATATTAAATCTATATAATTGTACCTT
AAGTCGTCTACTCTACACACTATCTATTATAATTAATTAAACCGTAGGAT
ACTTCTGTTCTTGTCTTGACTGCCTTGCAAAGTACTTAATGTGTTGTTTT
AGTAAAACATAACTTTTAAGCACAACAAAAAAAAAAAAAAAA

RE67266.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Chi-RB 2124 Chi-RB 1..2124 2..2125 10605 99.9 Plus
Chi-RA 2346 Chi-RA 309..2343 92..2126 10160 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19917573..19919611 2126..88 10135 99.8 Minus
chr2R 21145070 chr2R 19919713..19919803 92..2 455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24031531..24033576 2133..88 10170 99.8 Minus
2R 25286936 2R 24033678..24033768 92..2 455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24032730..24034775 2133..88 10170 99.8 Minus
2R 25260384 2R 24034877..24034967 92..2 455 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:50:55 has no hits.

RE67266.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:51:47 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19917573..19919607 92..2126 99 <- Minus
chr2R 19919714..19919803 1..91 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-06-04 13:44:20 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 1..1791 70..1860 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 22:01:15 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 1..1791 70..1860 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:46 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 1..1791 70..1860 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:20 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 1..1791 70..1860 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-04 13:44:17 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 1..2124 2..2125 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 22:01:15 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 1..2124 2..2125 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:46 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 1..2125 2..2126 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:20 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 1..2125 2..2126 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:51:47 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24031538..24033572 92..2126 99 <- Minus
2R 24033679..24033768 1..91 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:51:47 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24031538..24033572 92..2126 99 <- Minus
2R 24033679..24033768 1..91 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:51:47 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24031538..24033572 92..2126 99 <- Minus
2R 24033679..24033768 1..91 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:46 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19919061..19921095 92..2126 99 <- Minus
arm_2R 19921202..19921291 1..91 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:39:03 Download gff for RE67266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24032755..24034789 92..2126 99 <- Minus
2R 24034896..24034985 1..91 98   Minus

RE67266.pep Sequence

Translation from 69 to 1859

> RE67266.pep
MQCDIQTSRRECPIEPTTGMNRRGLNAGNTMTSQANIDDGSWKAVSEGGS
MLPASNSAVLNPDGSNQSGFAQGGLPYNSAGNPYPPAGQSSPAGNQSIVF
QNSNQPGSNTPQYTSSPAPSGSSTPGPVGAQNIPGNYPQSATAGNFNGPV
GGPFGSPSSGLGQFSRPASSGTPFNSGQAGHFSSPTVFSVGGQFNPMPPA
SPFGHGGNHPMMGGPQQMERIDQGFRRHNSYFSHTEHRVFELNKRLQQRN
EESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRYTIGRTLIPRFFRSIY
EGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVCADARL
ILEFMYDDYMRIKSWHMTIKGHRELIPRSVIGTSLPPDPMLLDQITKNIT
RAGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRM
VAPPGKKDPQRPPNKRRKRKGSNSGGGNNSNTPPVTNQKRSPSGPSFSLS
SQDVMVVGEPTLMGGEFGEEDERLITRLENTQYDGTNAVEHDNHTGFGHA
DSPISGSNPWSIDRAGAIPASPGNGAAPQNNANISDIDKKSPIVSQ*

RE67266.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12038-PA 577 GF12038-PA 1..577 20..596 3027 97.7 Plus
Dana\GF19017-PA 218 GF19017-PA 79..203 217..341 663 93.6 Plus
Dana\GF19019-PA 99 GF19019-PA 37..98 460..521 238 91.9 Plus
Dana\GF19018-PA 54 GF19018-PA 1..40 360..399 195 90 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19962-PA 596 GG19962-PA 1..596 1..596 3175 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21714-PA 579 GH21714-PA 1..579 20..596 2826 92.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Chi-PB 596 CG3924-PB 1..596 1..596 3215 100 Plus
Chi-PA 577 CG3924-PA 1..577 20..596 3109 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18855-PA 548 GI18855-PA 1..548 51..596 2741 93.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10430-PA 567 GL10430-PA 1..567 31..596 2954 97.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17778-PA 567 GA17778-PA 1..567 31..596 2959 97.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18282-PA 596 GM18282-PA 1..596 1..596 3183 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24979-PA 596 GD24979-PA 1..596 1..596 3187 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20439-PA 579 GJ20439-PA 1..579 20..596 2903 92.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21383-PA 584 GK21383-PA 1..584 20..596 2935 95.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11494-PA 596 GE11494-PA 1..596 1..596 3175 99.5 Plus

RE67266.hyp Sequence

Translation from 69 to 1859

> RE67266.hyp
MQCDIQTSRRECPIEPTTGMNRRGLNAGNTMTSQANIDDGSWKAVSEGGS
MLPASNSAVLNPDGSNQSGFAQGGLPYNSAGNPYPPAGQSSPAGNQSIVF
QNSNQPGSNTPQYTSSPAPSGSSTPGPVGAQNIPGNYPQSATAGNFNGPV
GGPFGSPSSGLGQFSRPASSGTPFNSGQAGHFSSPTVFSVGGQFNPMPPA
SPFGHGGNHPMMGGPQQMERIDQGFRRHNSYFSHTEHRVFELNKRLQQRN
EESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRYTIGRTLIPRFFRSIY
EGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVCADARL
ILEFMYDDYMRIKSWHMTIKGHRELIPRSVIGTSLPPDPMLLDQITKNIT
RAGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRM
VAPPGKKDPQRPPNKRRKRKGSNSGGGNNSNTPPVTNQKRSPSGPSFSLS
SQDVMVVGEPTLMGGEFGEEDERLITRLENTQYDGTNAVEHDNHTGFGHA
DSPISGSNPWSIDRAGAIPASPGNGAAPQNNANISDIDKKSPIVSQ*

RE67266.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Chi-PB 596 CG3924-PB 1..596 1..596 3215 100 Plus
Chi-PA 577 CG3924-PA 1..577 20..596 3109 100 Plus