BDGP Sequence Production Resources |
Search the DGRC for RE67446
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 674 |
Well: | 46 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6685-RA |
Protein status: | RE67446.pep: gold |
Preliminary Size: | 642 |
Sequenced Size: | 928 |
Gene | Date | Evidence |
---|---|---|
CG6685 | 2001-12-17 | Blastp of sequenced clone |
CG6685 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6685 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6685 | 2008-04-29 | Release 5.5 accounting |
CG6685 | 2008-08-15 | Release 5.9 accounting |
CG6685 | 2008-12-18 | 5.12 accounting |
928 bp (928 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071624
> RE67446.complete AAGAAGAAATGGAGGAGGAGCAACAATTTACGCCGGAACCGAAAAACTCC GCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAGGTGAAAGT TAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCAAATCCTGC TCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCATTCTCCAG TATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAAAACTGCGA CTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCATGAAAAGTT CGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTGTGAACTCC ATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAACGGCATTGA CTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGGCCAGCCGC AAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGGAAATTGAG CTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTGGCACGCAG CATGGGGCAGCGTTTATTTGACCACCAGTTTTTGGATTACATGGAACAGC GGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGCTAACGTAG AGGCTGTTATTGAGTAATTGAGGAATTTAGCACACAGAGCATTTATTCAT TTCCACACATTTATTAAACATTTAAATTCAATTGTTTGTTACATACGTAC ATTGTCACACGCATTTGCACCGCTCCATTATCATCAATCAAATCATCGGA TCCCACGTTTATACATTATTAGTATTACTATGCCAAATGCCCCAACCTTT GTACGTATTAATATTTGATAATTACACTCTTAATTAAGTACTTGACTATA AACAGTTTTAGCACAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9958996..9959410 | 914..499 | 1970 | 98.8 | Minus |
chr3L | 24539361 | chr3L | 9959624..9959831 | 406..199 | 1040 | 100 | Minus |
chr3L | 24539361 | chr3L | 9959895..9960089 | 198..4 | 885 | 96.9 | Minus |
chr3L | 24539361 | chr3L | 9959477..9959570 | 500..407 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 9967207..9967623 | 915..499 | 2085 | 100 | Minus |
3L | 28110227 | 3L | 9967834..9968041 | 406..199 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 9968105..9968299 | 198..4 | 975 | 100 | Minus |
3L | 28110227 | 3L | 9967687..9967780 | 500..407 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9960307..9960723 | 915..499 | 2085 | 100 | Minus |
3L | 28103327 | 3L | 9960934..9961141 | 406..199 | 1040 | 100 | Minus |
3L | 28103327 | 3L | 9961205..9961399 | 198..4 | 975 | 100 | Minus |
3L | 28103327 | 3L | 9960787..9960880 | 500..407 | 470 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9959477..9959570 | 407..500 | 100 | <- | Minus |
chr3L | 9958996..9959408 | 501..914 | 98 | <- | Minus |
chr3L | 9959624..9959831 | 199..406 | 100 | <- | Minus |
chr3L | 9959895..9960091 | 1..198 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6685-RA | 1..642 | 9..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6685-RA | 1..642 | 9..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6685-RA | 1..642 | 9..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6685-RA | 1..642 | 9..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6685-RA | 1..642 | 9..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6685-RA | 1..913 | 2..914 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6685-RA | 1..913 | 2..914 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6685-RA | 17..929 | 1..914 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6685-RA | 1..913 | 2..914 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6685-RA | 17..929 | 1..914 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9967208..9967621 | 501..914 | 100 | <- | Minus |
3L | 9967687..9967780 | 407..500 | 100 | <- | Minus |
3L | 9967834..9968041 | 199..406 | 100 | <- | Minus |
3L | 9968105..9968301 | 1..198 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9967208..9967621 | 501..914 | 100 | <- | Minus |
3L | 9967687..9967780 | 407..500 | 100 | <- | Minus |
3L | 9967834..9968041 | 199..406 | 100 | <- | Minus |
3L | 9968105..9968301 | 1..198 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9967208..9967621 | 501..914 | 100 | <- | Minus |
3L | 9967687..9967780 | 407..500 | 100 | <- | Minus |
3L | 9967834..9968041 | 199..406 | 100 | <- | Minus |
3L | 9968105..9968301 | 1..198 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9961205..9961401 | 1..198 | 99 | Minus | |
arm_3L | 9960308..9960721 | 501..914 | 100 | <- | Minus |
arm_3L | 9960787..9960880 | 407..500 | 100 | <- | Minus |
arm_3L | 9960934..9961141 | 199..406 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9960308..9960721 | 501..914 | 100 | <- | Minus |
3L | 9960787..9960880 | 407..500 | 100 | <- | Minus |
3L | 9960934..9961141 | 199..406 | 100 | <- | Minus |
3L | 9961205..9961401 | 1..198 | 99 | Minus |
Translation from 0 to 649
> RE67446.hyp KEMEEEQQFTPEPKNSAQKGAEKPARIPREVKVKLQRQLNRLGYSQQILL EAAKQQNQNNSNGILQYVADMIGKGEEMVKNCDSVSLNNINQWLELMKSS QLAELCEFEAAVVVNSIIQNETKPSPTELNGIDLNEAYKFLENALMGQPQ KKMSDATKEFLSKEIELLIEKANTDESDDVARSMGQRLFDHQFLDYMEQR QKCSLDPLFLDEKLT*
Translation from 8 to 649
> RE67446.pep MEEEQQFTPEPKNSAQKGAEKPARIPREVKVKLQRQLNRLGYSQQILLEA AKQQNQNNSNGILQYVADMIGKGEEMVKNCDSVSLNNINQWLELMKSSQL AELCEFEAAVVVNSIIQNETKPSPTELNGIDLNEAYKFLENALMGQPQKK MSDATKEFLSKEIELLIEKANTDESDDVARSMGQRLFDHQFLDYMEQRQK CSLDPLFLDEKLT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23852-PA | 184 | GF23852-PA | 1..184 | 31..213 | 568 | 60.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13992-PA | 212 | GG13992-PA | 2..212 | 3..213 | 923 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15407-PA | 209 | GH15407-PA | 57..209 | 64..210 | 397 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6685-PB | 213 | CG6685-PB | 1..213 | 1..213 | 1081 | 100 | Plus |
CG6685-PA | 213 | CG6685-PA | 1..213 | 1..213 | 1081 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13012-PA | 208 | GI13012-PA | 23..208 | 25..210 | 447 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11861-PA | 196 | GL11861-PA | 16..196 | 29..210 | 489 | 54.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19779-PA | 196 | GA19779-PA | 16..196 | 29..210 | 488 | 54.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24828-PA | 177 | GM24828-PA | 3..177 | 4..213 | 778 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12880-PA | 213 | GD12880-PA | 1..213 | 1..213 | 1027 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12104-PA | 208 | GJ12104-PA | 45..208 | 48..210 | 469 | 52.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17415-PA | 216 | GK17415-PA | 29..214 | 25..209 | 482 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20288-PA | 212 | GE20288-PA | 2..212 | 3..213 | 886 | 78.2 | Plus |