Clone RE67446 Report

Search the DGRC for RE67446

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:674
Well:46
Vector:pFlc-1
Associated Gene/TranscriptCG6685-RA
Protein status:RE67446.pep: gold
Preliminary Size:642
Sequenced Size:928

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6685 2001-12-17 Blastp of sequenced clone
CG6685 2002-01-01 Sim4 clustering to Release 2
CG6685 2003-01-01 Sim4 clustering to Release 3
CG6685 2008-04-29 Release 5.5 accounting
CG6685 2008-08-15 Release 5.9 accounting
CG6685 2008-12-18 5.12 accounting

Clone Sequence Records

RE67446.complete Sequence

928 bp (928 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071624

> RE67446.complete
AAGAAGAAATGGAGGAGGAGCAACAATTTACGCCGGAACCGAAAAACTCC
GCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAGGTGAAAGT
TAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCAAATCCTGC
TCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCATTCTCCAG
TATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAAAACTGCGA
CTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCATGAAAAGTT
CGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTGTGAACTCC
ATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAACGGCATTGA
CTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGGCCAGCCGC
AAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGGAAATTGAG
CTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTGGCACGCAG
CATGGGGCAGCGTTTATTTGACCACCAGTTTTTGGATTACATGGAACAGC
GGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGCTAACGTAG
AGGCTGTTATTGAGTAATTGAGGAATTTAGCACACAGAGCATTTATTCAT
TTCCACACATTTATTAAACATTTAAATTCAATTGTTTGTTACATACGTAC
ATTGTCACACGCATTTGCACCGCTCCATTATCATCAATCAAATCATCGGA
TCCCACGTTTATACATTATTAGTATTACTATGCCAAATGCCCCAACCTTT
GTACGTATTAATATTTGATAATTACACTCTTAATTAAGTACTTGACTATA
AACAGTTTTAGCACAAAAAAAAAAAAAA

RE67446.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685.c 2477 CG6685.c 43..954 4..915 4560 100 Plus
CG6685.a 1664 CG6685.a 43..954 4..915 4560 100 Plus
CG6685.b 1884 CG6685.b 43..954 4..915 4560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9958996..9959410 914..499 1970 98.8 Minus
chr3L 24539361 chr3L 9959624..9959831 406..199 1040 100 Minus
chr3L 24539361 chr3L 9959895..9960089 198..4 885 96.9 Minus
chr3L 24539361 chr3L 9959477..9959570 500..407 470 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9967207..9967623 915..499 2085 100 Minus
3L 28110227 3L 9967834..9968041 406..199 1040 100 Minus
3L 28110227 3L 9968105..9968299 198..4 975 100 Minus
3L 28110227 3L 9967687..9967780 500..407 470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9960307..9960723 915..499 2085 100 Minus
3L 28103327 3L 9960934..9961141 406..199 1040 100 Minus
3L 28103327 3L 9961205..9961399 198..4 975 100 Minus
3L 28103327 3L 9960787..9960880 500..407 470 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:07:32 has no hits.

RE67446.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:08:31 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9959477..9959570 407..500 100 <- Minus
chr3L 9958996..9959408 501..914 98 <- Minus
chr3L 9959624..9959831 199..406 100 <- Minus
chr3L 9959895..9960091 1..198 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:33 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..642 9..650 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:56 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..642 9..650 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:17:32 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..642 9..650 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:41 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..642 9..650 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:27:39 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..642 9..650 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:22:44 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..913 2..914 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:56 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..913 2..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:17:32 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 17..929 1..914 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:41 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..913 2..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:27:39 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 17..929 1..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:31 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9967208..9967621 501..914 100 <- Minus
3L 9967687..9967780 407..500 100 <- Minus
3L 9967834..9968041 199..406 100 <- Minus
3L 9968105..9968301 1..198 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:31 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9967208..9967621 501..914 100 <- Minus
3L 9967687..9967780 407..500 100 <- Minus
3L 9967834..9968041 199..406 100 <- Minus
3L 9968105..9968301 1..198 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:31 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9967208..9967621 501..914 100 <- Minus
3L 9967687..9967780 407..500 100 <- Minus
3L 9967834..9968041 199..406 100 <- Minus
3L 9968105..9968301 1..198 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:17:32 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9961205..9961401 1..198 99   Minus
arm_3L 9960308..9960721 501..914 100 <- Minus
arm_3L 9960787..9960880 407..500 100 <- Minus
arm_3L 9960934..9961141 199..406 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:40 Download gff for RE67446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9960308..9960721 501..914 100 <- Minus
3L 9960787..9960880 407..500 100 <- Minus
3L 9960934..9961141 199..406 100 <- Minus
3L 9961205..9961401 1..198 99   Minus

RE67446.hyp Sequence

Translation from 0 to 649

> RE67446.hyp
KEMEEEQQFTPEPKNSAQKGAEKPARIPREVKVKLQRQLNRLGYSQQILL
EAAKQQNQNNSNGILQYVADMIGKGEEMVKNCDSVSLNNINQWLELMKSS
QLAELCEFEAAVVVNSIIQNETKPSPTELNGIDLNEAYKFLENALMGQPQ
KKMSDATKEFLSKEIELLIEKANTDESDDVARSMGQRLFDHQFLDYMEQR
QKCSLDPLFLDEKLT*

RE67446.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-PB 213 CG6685-PB 1..213 3..215 1081 100 Plus
CG6685-PA 213 CG6685-PA 1..213 3..215 1081 100 Plus

RE67446.pep Sequence

Translation from 8 to 649

> RE67446.pep
MEEEQQFTPEPKNSAQKGAEKPARIPREVKVKLQRQLNRLGYSQQILLEA
AKQQNQNNSNGILQYVADMIGKGEEMVKNCDSVSLNNINQWLELMKSSQL
AELCEFEAAVVVNSIIQNETKPSPTELNGIDLNEAYKFLENALMGQPQKK
MSDATKEFLSKEIELLIEKANTDESDDVARSMGQRLFDHQFLDYMEQRQK
CSLDPLFLDEKLT*

RE67446.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23852-PA 184 GF23852-PA 1..184 31..213 568 60.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13992-PA 212 GG13992-PA 2..212 3..213 923 82 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15407-PA 209 GH15407-PA 57..209 64..210 397 52.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-PB 213 CG6685-PB 1..213 1..213 1081 100 Plus
CG6685-PA 213 CG6685-PA 1..213 1..213 1081 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13012-PA 208 GI13012-PA 23..208 25..210 447 47.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11861-PA 196 GL11861-PA 16..196 29..210 489 54.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19779-PA 196 GA19779-PA 16..196 29..210 488 54.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24828-PA 177 GM24828-PA 3..177 4..213 778 74.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12880-PA 213 GD12880-PA 1..213 1..213 1027 91.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12104-PA 208 GJ12104-PA 45..208 48..210 469 52.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17415-PA 216 GK17415-PA 29..214 25..209 482 50 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20288-PA 212 GE20288-PA 2..212 3..213 886 78.2 Plus