Clone RE67487 Report

Search the DGRC for RE67487

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:674
Well:87
Vector:pFlc-1
Associated Gene/TranscriptEfSec-RA
Protein status:RE67487.pep: gold
Preliminary Size:1585
Sequenced Size:1623

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9841 2001-12-14 Blastp of sequenced clone
CG9841 2002-01-01 Sim4 clustering to Release 2
CG9841 2003-01-01 Sim4 clustering to Release 3
EfSec 2008-04-29 Release 5.5 accounting
EfSec 2008-08-15 Release 5.9 accounting
EfSec 2008-12-18 5.12 accounting

Clone Sequence Records

RE67487.complete Sequence

1623 bp (1623 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071627

> RE67487.complete
AATTGGATTTCTATTGTTTGGTTTAGTGCAGTCTATTTTTTACCTCATTT
TTCCTCGGCGTACAATGCCGATCAACTTTAATATTGGCTTGCTGGGACAT
GTTGACAGTGGCAAGACCACCTTGGCCAAGGCTTTAAGTTCGATTTCCAG
CACGGCCGCCTTCGACAAGAATCCGCAATCAGTGGAGCGAGGCATAACTT
TGGATTTGGGCTTTAGTGGACTTTTGGTGGATGCTCCTGCGCACTTACCT
CAAGGAGAACAGCTCCAGTTCACCTTTGTCGACTGCCCCGGCCATGCAAG
TCTTATACGCACTATTATAGGAGGTGCCCAGATCATTGATCTCATGCTCC
TGGTGGTGGACGCCCAAAAAGGCAAACAAACCCAAACAGCAGAATGCCTC
ATTATCGGGGAGCTGCTGCAGAAAAAGCTGATTGTAGTGATCAACAAAAT
AGATGTTTATCCAGAAAATCAGAGGGCGTCCAAGCTGGAGAAGCTACGCT
TGCGGCTCGCAAAAACTTTGGAAGCCACCACATTCGGTGGTCAAGTGCCC
ATATGTGCTGTGTCTGCTTTGCAAGGAACACATATCGCGGAGTTGCGAGA
AGTACTTAGAGAAGCCTACTTTCAGCCGCAGAGAAACCTAGCCGATCCAC
TCTTCATGTACGTTGATCATTGCTTCGGAATAAAGGGCCAGGGAACCGTT
TGCACTGGCACTCTGCTCCAGGGAAAGGTTCAGGTAAACAATGTGATTGA
GCTGCCAGCTCTTGGGGAGCAAAGGAAAGTGAAGTCCATACAGATGTTTC
GCAAAAACGTGACCAGCGCCTCTATGGGCGACAGAATTGGGCTTTGCGTG
ACACAATTCAATGCAAAGCTGCTGGAGCGTGGAATCATTACCCAACCGGG
TTACCTGAAACCCATCTATGCCGTGTGTCTACAGTTTAAACCCATCCGCT
ATTACAAGGAAGTCATAAAATCTATGAGGAAGATGCACATCTCCGTGGGA
CACAACACAGTGATGGCCAATGTAACTTTGTTTCGGGATACGGACGGCAC
AACTTCCACTTTCCAACTGGACAAAGAATACGAGTATATGGAGGACGTCC
AGCCTGCGGAGGTTCAACATAATGATGTGATCTACGCTCTGTTGCAATTC
GAAAGTCCTGTTCTATCTCCGCCACATTCAACGCTGATTGCTTCGAAGCT
GGACATGGATGTCCATAGTACCAGTTGTAGATTGGCGTTTTGGGGACGCA
TTGCCTGGCAGACGCACAGTTCCAAATACTTTCAGGAAGAACTGCCGAAA
CTGCGGATTTTCAAGCGCAAACAGAAAGTGGGAAGCATTCAGCGAGTGGT
CAATAGCAGCGAAGTGATAGTTCAAAACCTTTTTAAGGACGCCAAACGTG
ATTTGTACGTCGGCAAGAATGTGGAGCTCTCGACGGGAGAGAAGGGTCGC
ATTGAACGCACCTTTGGCCAGACATCCAAAGTGGCTATAACTTTTCAGGA
CGCCCTATCTCCTGAAACAATAAGCAATGTGAAGAATGTTAAGGTTTTGC
TGAACTGTAAGAAATATGTGTTCAATAAACAGGCAGGCTTGTTTCAATGA
CAAAGCTAAAAAAAAAAAAAAAA

RE67487.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
EfSec-RA 1716 EfSec-RA 35..1643 1..1609 8030 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17271106..17272392 1605..322 6235 99.1 Minus
chr2R 21145070 chr2R 17272446..17272767 325..1 1425 96.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21384550..21385837 1609..322 6425 99.9 Minus
2R 25286936 2R 21385891..21386215 325..1 1625 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21385749..21387036 1609..322 6425 99.9 Minus
2R 25260384 2R 21387090..21387414 325..1 1625 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:46:35 has no hits.

RE67487.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:47:38 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17271104..17272390 324..1607 99 <- Minus
chr2R 17272448..17272767 1..323 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:36 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
EfSec-RA 1..1536 65..1600 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:05:12 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
EfSec-RA 1..1536 65..1600 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:55:03 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
EfSec-RA 1..1536 65..1600 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:29:50 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
EfSec-RA 1..1536 65..1600 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:52 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
EfSec-RA 1..1536 65..1600 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:32:59 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
EfSec-RA 1..1604 1..1604 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:05:12 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
EfSec-RA 1..1604 1..1604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:55:03 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
EfSec-RA 7..1612 1..1607 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:29:51 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
EfSec-RA 1..1604 1..1604 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:52 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
EfSec-RA 7..1612 1..1607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:38 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21384552..21385835 324..1607 99 <- Minus
2R 21385893..21386215 1..323 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:38 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21384552..21385835 324..1607 99 <- Minus
2R 21385893..21386215 1..323 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:38 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21384552..21385835 324..1607 99 <- Minus
2R 21385893..21386215 1..323 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:55:03 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17272057..17273340 324..1607 99 <- Minus
arm_2R 17273398..17273720 1..323 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:05:58 Download gff for RE67487.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21385751..21387034 324..1607 99 <- Minus
2R 21387092..21387414 1..323 100   Minus

RE67487.hyp Sequence

Translation from 0 to 1599

> RE67487.hyp
IGFLLFGLVQSIFYLIFPRRTMPINFNIGLLGHVDSGKTTLAKALSSISS
TAAFDKNPQSVERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHAS
LIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVINKI
DVYPENQRASKLEKLRLRLAKTLEATTFGGQVPICAVSALQGTHIAELRE
VLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQVNNVIE
LPALGEQRKVKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERGIITQPG
YLKPIYAVCLQFKPIRYYKEVIKSMRKMHISVGHNTVMANVTLFRDTDGT
TSTFQLDKEYEYMEDVQPAEVQHNDVIYALLQFESPVLSPPHSTLIASKL
DMDVHSTSCRLAFWGRIAWQTHSSKYFQEELPKLRIFKRKQKVGSIQRVV
NSSEVIVQNLFKDAKRDLYVGKNVELSTGEKGRIERTFGQTSKVAITFQD
ALSPETISNVKNVKVLLNCKKYVFNKQAGLFQ*

RE67487.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
EfSec-PA 511 CG9841-PA 1..511 22..532 2604 100 Plus
CG12736-PA 456 CG12736-PA 59..338 27..296 306 29.7 Plus
EfTuM-PB 489 CG6050-PB 78..373 20..305 266 29 Plus
EfTuM-PA 489 CG6050-PA 78..373 20..305 266 29 Plus
Ef1alpha100E-PD 462 CG1873-PD 6..325 24..296 205 24.6 Plus

RE67487.pep Sequence

Translation from 64 to 1599

> RE67487.pep
MPINFNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGF
SGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDA
QKGKQTQTAECLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAK
TLEATTFGGQVPICAVSALQGTHIAELREVLREAYFQPQRNLADPLFMYV
DHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVT
SASMGDRIGLCVTQFNAKLLERGIITQPGYLKPIYAVCLQFKPIRYYKEV
IKSMRKMHISVGHNTVMANVTLFRDTDGTTSTFQLDKEYEYMEDVQPAEV
QHNDVIYALLQFESPVLSPPHSTLIASKLDMDVHSTSCRLAFWGRIAWQT
HSSKYFQEELPKLRIFKRKQKVGSIQRVVNSSEVIVQNLFKDAKRDLYVG
KNVELSTGEKGRIERTFGQTSKVAITFQDALSPETISNVKNVKVLLNCKK
YVFNKQAGLFQ*

RE67487.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12096-PA 440 GF12096-PA 1..430 1..434 1844 78.8 Plus
Dana\GF13674-PA 456 GF13674-PA 59..338 6..275 304 29.7 Plus
Dana\GF13698-PA 489 GF13698-PA 84..373 6..284 272 29.1 Plus
Dana\GF22982-PA 462 GF22982-PA 6..325 3..275 215 24.6 Plus
Dana\GF12779-PA 663 GF12779-PA 142..536 3..346 185 23.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20777-PA 512 GG20777-PA 1..512 1..511 2511 91 Plus
Dere\GG10739-PA 456 GG10739-PA 59..338 6..275 308 30.1 Plus
Dere\GG20385-PA 489 GG20385-PA 84..373 6..284 269 29.1 Plus
Dere\GG11826-PA 462 GG11826-PA 6..325 3..275 215 24.6 Plus
Dere\eIF2gamma-PA 475 GG20759-PA 41..295 5..230 196 28.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21181-PA 525 GH21181-PA 5..525 4..511 1824 68.7 Plus
Dgri\GH19814-PA 462 GH19814-PA 65..344 6..275 307 31.1 Plus
Dgri\GH13998-PA 462 GH13998-PA 57..346 6..284 271 28.9 Plus
Dgri\GH18651-PA 462 GH18651-PA 6..325 3..275 214 24.6 Plus
Dgri\GH21478-PA 463 GH21478-PA 6..333 3..283 192 24.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
eEFSec-PA 511 CG9841-PA 1..511 1..511 2604 100 Plus
mEFTu2-PA 456 CG12736-PA 59..338 6..275 306 29.7 Plus
mEFTu1-PB 489 CG6050-PB 84..373 6..284 263 28.7 Plus
mEFTu1-PA 489 CG6050-PA 84..373 6..284 263 28.7 Plus
eEF1alpha2-PD 462 CG1873-PD 6..325 3..275 205 24.6 Plus
eEF1alpha2-PC 462 CG1873-PC 6..325 3..275 205 24.6 Plus
eEF1alpha2-PB 462 CG1873-PB 6..325 3..275 205 24.6 Plus
eEF1alpha2-PA 462 CG1873-PA 6..325 3..275 205 24.6 Plus
eIF2gamma-PC 467 CG43665-PC 34..287 6..230 201 27.8 Plus
eIF2gamma-PD 475 CG43665-PD 42..295 6..230 201 27.8 Plus
eIF2gamma-PB 475 CG43665-PB 42..295 6..230 201 27.8 Plus
Dgp-1-PB 669 CG5729-PB 142..474 3..292 191 24.7 Plus
Dgp-1-PA 669 CG5729-PA 142..474 3..292 191 24.7 Plus
mIF2-PA 696 CG12413-PA 165..320 7..181 191 33.1 Plus
HBS1-PB 670 CG1898-PB 252..638 9..366 179 23.8 Plus
HBS1-PA 670 CG1898-PA 252..638 9..366 179 23.8 Plus
eRF3-PC 495 CG6382-PC 73..413 6..317 156 23.5 Plus
eRF3-PB 619 CG6382-PB 197..537 6..317 156 23.5 Plus
eRF3-PD 619 CG6382-PD 197..537 6..317 156 23.5 Plus
eRF3-PA 619 CG6382-PA 197..537 6..317 156 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20468-PA 514 GI20468-PA 1..514 1..511 1958 72.2 Plus
Dmoj\GI20403-PA 461 GI20403-PA 64..343 6..275 287 29.4 Plus
Dmoj\GI21331-PA 451 GI21331-PA 46..335 6..284 273 29.2 Plus
Dmoj\GI23129-PA 462 GI23129-PA 6..325 3..275 215 24.6 Plus
Dmoj\GI22867-PA 677 GI22867-PA 146..301 7..181 185 35.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11842-PA 191 GL11842-PA 1..187 1..187 774 80.2 Plus
Dper\GL11843-PA 125 GL11843-PA 1..125 387..511 407 64.1 Plus
Dper\GL20115-PA 457 GL20115-PA 60..339 6..275 298 29.4 Plus
Dper\GL17405-PA 488 GL17405-PA 83..372 6..284 263 28.8 Plus
Dper\GL23995-PA 462 GL23995-PA 6..325 3..275 214 24.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22068-PA 512 GA22068-PA 1..512 1..511 2078 74.8 Plus
Dpse\GA11779-PA 457 GA11779-PA 60..339 6..275 299 29.4 Plus
Dpse\GA19322-PA 488 GA19322-PA 83..372 6..284 263 28.8 Plus
Dpse\GA15055-PA 462 GA15055-PA 6..325 3..275 214 24.6 Plus
Dpse\GA23522-PA 668 GA23522-PA 250..562 9..284 195 27.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15722-PA 512 GM15722-PA 1..512 1..511 2648 96.3 Plus
Dsec\GM20785-PA 456 GM20785-PA 59..338 6..275 305 29.7 Plus
Dsec\GM16446-PA 462 GM16446-PA 6..325 3..275 215 24.6 Plus
Dsec\GM16291-PA 696 GM16291-PA 165..320 7..181 184 35.4 Plus
Dsec\GM19921-PA 669 GM19921-PA 142..536 3..346 179 23.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25199-PA 512 GD25199-PA 1..512 1..511 2619 95.3 Plus
Dsim\GD21598-PA 462 GD21598-PA 6..325 3..275 215 24.6 Plus
Dsim\GD10821-PA 461 GD10821-PA 6..331 3..283 185 23.3 Plus
Dsim\GD18031-PA 668 GD18031-PA 137..292 7..181 183 35.4 Plus
Dsim\GD23839-PA 619 GD23839-PA 197..537 6..317 166 23.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22318-PA 516 GJ22318-PA 1..516 1..511 1939 70.4 Plus
Dvir\GJ20075-PA 461 GJ20075-PA 64..343 6..275 303 29.7 Plus
Dvir\GJ19676-PA 487 GJ19676-PA 82..371 6..284 269 29.1 Plus
Dvir\GJ23103-PA 462 GJ23103-PA 6..325 3..275 213 24.6 Plus
Dvir\GJ17887-PA 463 GJ17887-PA 6..325 3..275 202 24.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19666-PA 443 GK19666-PA 45..325 6..275 299 29.9 Plus
Dwil\GK15961-PA 488 GK15961-PA 83..372 6..284 268 29.1 Plus
Dwil\GK12116-PA 462 GK12116-PA 6..325 3..275 215 24.6 Plus
Dwil\GK22048-PA 463 GK22048-PA 6..333 3..283 195 24.6 Plus
Dwil\GK10605-PA 698 GK10605-PA 280..592 9..284 186 26.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13715-PA 512 GE13715-PA 1..512 1..511 2512 91 Plus
Dyak\GE23915-PA 456 GE23915-PA 59..338 6..275 309 30.1 Plus
Dyak\GE12547-PA 489 GE12547-PA 84..373 6..284 268 29.1 Plus
Dyak\GE10959-PA 462 GE10959-PA 6..325 3..275 215 24.6 Plus
Dyak\GE10510-PA 696 GE10510-PA 165..320 7..181 184 35.4 Plus