Clone RE67594 Report

Search the DGRC for RE67594

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:675
Well:94
Vector:pFlc-1
Associated Gene/TranscriptCG1291-RA
Protein status:RE67594.pep: gold
Preliminary Size:1448
Sequenced Size:1483

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1291 2001-12-17 Blastp of sequenced clone
CG1291 2002-01-01 Sim4 clustering to Release 2
CG1291 2003-01-01 Sim4 clustering to Release 3
CG1291 2008-04-29 Release 5.5 accounting
CG1291 2008-08-15 Release 5.9 accounting
CG1291 2008-12-18 5.12 accounting

Clone Sequence Records

RE67594.complete Sequence

1483 bp (1483 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071629

> RE67594.complete
ATTCATCCTACCACGGTCACACTTTCGGCAATCAGCTGAGAAAATATTTA
AAAGTTTTAAATATTAAAAACAAAGGCCCGTAAAGAATGCAAATATTCTG
ACCCCGTGGCATAAAAAGAATATAGTCCTAGTTCTAGCATATTGTTTGTA
AATTCCTTTACTCCAGACTTCCGGTTGAGACCATGGTTCGAGTTCTGTTC
CTCCACCCGGATTTGGGCATCGGAGGAGCTGAGCGACTGGTGGTGGATGC
CGCTCTGGCACTCAAGGAGCGGGGTCACCAGGTTAGCTTCCTAACGAATC
ACCACGACAGCACGCACTGCTTCAAGGAGACGGCGGACGGCACTTTTCCG
GTCCACGTAGTGGGCGACTGGTTGCCACGCGGGCTCTTCGGAAGATTCTA
TGCCATCTGTGCCTATCTGCGCATGCTCTATGCGGCGATCTACGCCAGTT
TTTTTATGCCCCAGCGGGAGCAAGTGGACGTGGTGGTGTGCGACCTAATC
TCTGTGTGCATTCCAGTTCTCCGCTTCGCCCCTCATCGTCCGAAGGTTCT
ATTCTACTGCCACTTTCCGGATCAGCTTCTCAGCAGCCGTGAAGGACTGC
TAAAGCGGCTGTACCGCCTGCCCATCAACTGGCTGGAGGAGCACACGATC
GGTCTAGCAGACAAGGTGCTGGTCAACTCCAAATTTACGCTACGTGTCTT
CCAGGACACCTTTCGCCGACTGAGCACGGTGCCGGATGTGCTGTATCCTT
CACTGCACACCCAGTACTTTGACCAGATGCAGAAAAAGCTAGAACAGCGG
TCTGCTTTACTGGACGAGCCAGTGCATCCGCGAGTACCACTCAACGCCTT
TATCTATCTGGACATCAATCGCTACGAGCGCAAGAAGAACCACGCCCTTG
CCTTACATTCCCTGCGCCTTCTGGGCGACATGCTGCCCGCCACGGACTTC
AAGCGCTGTCGCCTGATCATCGCCGGGGGTTACGACACCAGATGCATGGA
AAATGTGGAGCACTTCGCGGAGCTGGAGCACCTTACGGAGGAGTTGAAAC
TTCAGGATCACGTTGTGCTGCTACGCTCGCCTACCGACGAGGAGAAATGT
CGCCTGCTCTTTGCCGCTCACTGTCTGCTGTATACGCCAGAGAACGAGCA
CTTCGGCATTGTGCCGCTGGAGGGCATGTACTGCTCGAAGCCAGTCGTGG
CATTAAACAGCGGCGGACCCACTGAAACGGTGGTGAGCACTTCCACTGGC
TTTCTGTGCGAAAAGACCGAGAAGAGCTTTGGTGGAGCAATGCTCCAGCT
TTTCCGGGACGAGCAGCTGCGTGTAAAGATGGGAGACCAGGGTCACAAAC
GGGTGCAGCAAAAGTTCTCTTTCCAAGCATTCGCAGATCGGCTGAACGGC
ATTATTAGAGATCTTGTTCCTATCTCCAGGGAGTCGAGTGCTAAGAAAAA
TAAATAAAATTCCAACAAAAAAAAAAAAAAAAA

RE67594.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1291-RA 1479 CG1291-RA 1..1465 1..1465 7325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3143256..3144720 1..1465 7175 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3143810..3145274 1..1465 7325 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3143810..3145274 1..1465 7325 100 Plus
Blast to na_te.dros performed 2019-03-15 22:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 3649..3686 716..678 111 79.5 Minus

RE67594.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:52:09 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3143256..3144720 1..1466 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:45 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
CG1291-RA 1..1275 183..1457 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:33 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
CG1291-RA 1..1275 183..1457 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:34:04 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
CG1291-RA 1..1275 183..1457 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:18 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
CG1291-RA 1..1275 183..1457 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:19 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
CG1291-RA 1..1275 183..1457 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:43 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
CG1291-RA 1..1465 1..1466 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:33 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
CG1291-RA 1..1465 1..1466 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:34:04 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
CG1291-RA 3..1467 1..1466 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:19 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
CG1291-RA 1..1465 1..1466 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:19 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
CG1291-RA 3..1467 1..1466 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:09 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3143810..3145274 1..1466 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:09 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3143810..3145274 1..1466 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:09 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3143810..3145274 1..1466 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:34:04 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3143810..3145274 1..1466 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:20 Download gff for RE67594.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3143810..3145274 1..1466 99   Plus

RE67594.hyp Sequence

Translation from 182 to 1456

> RE67594.hyp
MVRVLFLHPDLGIGGAERLVVDAALALKERGHQVSFLTNHHDSTHCFKET
ADGTFPVHVVGDWLPRGLFGRFYAICAYLRMLYAAIYASFFMPQREQVDV
VVCDLISVCIPVLRFAPHRPKVLFYCHFPDQLLSSREGLLKRLYRLPINW
LEEHTIGLADKVLVNSKFTLRVFQDTFRRLSTVPDVLYPSLHTQYFDQMQ
KKLEQRSALLDEPVHPRVPLNAFIYLDINRYERKKNHALALHSLRLLGDM
LPATDFKRCRLIIAGGYDTRCMENVEHFAELEHLTEELKLQDHVVLLRSP
TDEEKCRLLFAAHCLLYTPENEHFGIVPLEGMYCSKPVVALNSGGPTETV
VSTSTGFLCEKTEKSFGGAMLQLFRDEQLRVKMGDQGHKRVQQKFSFQAF
ADRLNGIIRDLVPISRESSAKKNK*

RE67594.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1291-PA 424 CG1291-PA 1..424 1..424 2232 100 Plus
CG11306-PB 475 CG11306-PB 281..414 223..356 155 30.9 Plus
CG11306-PA 475 CG11306-PA 281..414 223..356 155 30.9 Plus

RE67594.pep Sequence

Translation from 182 to 1456

> RE67594.pep
MVRVLFLHPDLGIGGAERLVVDAALALKERGHQVSFLTNHHDSTHCFKET
ADGTFPVHVVGDWLPRGLFGRFYAICAYLRMLYAAIYASFFMPQREQVDV
VVCDLISVCIPVLRFAPHRPKVLFYCHFPDQLLSSREGLLKRLYRLPINW
LEEHTIGLADKVLVNSKFTLRVFQDTFRRLSTVPDVLYPSLHTQYFDQMQ
KKLEQRSALLDEPVHPRVPLNAFIYLDINRYERKKNHALALHSLRLLGDM
LPATDFKRCRLIIAGGYDTRCMENVEHFAELEHLTEELKLQDHVVLLRSP
TDEEKCRLLFAAHCLLYTPENEHFGIVPLEGMYCSKPVVALNSGGPTETV
VSTSTGFLCEKTEKSFGGAMLQLFRDEQLRVKMGDQGHKRVQQKFSFQAF
ADRLNGIIRDLVPISRESSAKKNK*

RE67594.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24268-PA 424 GF24268-PA 1..424 1..424 2028 87.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14904-PA 424 GG14904-PA 1..424 1..424 2203 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15819-PA 418 GH15819-PA 1..418 1..417 1920 84.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Alg2-PA 424 CG1291-PA 1..424 1..424 2232 100 Plus
Alg11-PB 475 CG11306-PB 281..414 223..356 155 30.9 Plus
Alg11-PA 475 CG11306-PA 281..414 223..356 155 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12600-PA 418 GI12600-PA 1..417 1..417 1852 83.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14148-PA 403 GL14148-PA 204..336 224..356 151 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11900-PA 420 GA11900-PA 1..417 1..417 1993 87.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14531-PA 424 GM14531-PA 1..424 1..424 2244 98.6 Plus
Dsec\GM22390-PA 473 GM22390-PA 231..412 159..356 152 26.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13727-PA 424 GD13727-PA 1..424 1..424 2246 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12723-PA 421 GJ12723-PA 1..419 1..422 1954 86.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17759-PA 421 GK17759-PA 1..419 1..422 1887 85.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20359-PA 424 GE20359-PA 1..424 1..424 2224 98.1 Plus
Dyak\GE19778-PA 651 GE19778-PA 409..590 159..356 152 26.6 Plus
Dyak\GE23039-PA 651 GE23039-PA 409..590 159..356 152 26.6 Plus