Clone RE67616 Report

Search the DGRC for RE67616

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:676
Well:16
Vector:pFlc-1
Associated Gene/TranscriptTtc19-RA
Protein status:RE67616.pep: gold
Preliminary Size:1074
Sequenced Size:1281

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15173 2001-12-16 Blastp of sequenced clone
CG15173 2002-01-01 Sim4 clustering to Release 2
CG15173 2003-01-01 Sim4 clustering to Release 3
CG15173 2008-04-29 Release 5.5 accounting
CG15173 2008-08-15 Release 5.9 accounting
CG15173 2008-12-18 5.12 accounting

Clone Sequence Records

RE67616.complete Sequence

1281 bp (1281 high quality bases) assembled on 2001-12-16

GenBank Submission: AY071630

> RE67616.complete
ATTTCATAATTTTTAATACCATACCTGCAACATTATAGGTTTTAGTTAAA
TAATTAATAAAGCCCTAAACATGTTAGTGAGAAATATTTGCAAGTTTACG
CAAGTTATGGGCAGGTTCCGCGTTGTCGTGAATCCCAGAGATTACTGTCA
TCTTGCGCCGCTGAAGAGAAGCCGTTATCACCAACGGTCAGAATTCGGAT
GTCGACCGCTGTGCTCCAATGCTGCGGGCTACGAGGTGTCCTGGGCAGCT
CCGCCCGCTTCTGGCTCTTCCGGTGGAATGTTTTGGGCATTTTCCGCTGC
TTTCACTCTGAATCTGTTTGGTGGCGCCGACGAAAAAGAGGAAACTCCGG
AGGAAAAACTGATCAAGACCATCAAACGATCAATCCTGTGCATTCAGAGG
GAACAGTACGACAAGGCCGAGCAAATGCTTCACCTGGCTCTGCGAATGGC
GCAGGATATTCAGAGCAAGGACGGCATCACATATGTGTTTGATCTGATGG
CCAATTTGGCCATGGAACGCGAGCAGTTTAAGAAGGCGGAGAAGATATTC
ACGGACGTTATGAAACGGCTTTTTGCCGAGGGTCACACCGAAGAGAGTCC
CAAGATACTTCACATCAGCTCCAAGATAGCACACATGTCTCAGCTGCAAG
GGGATCTGGAAAAGAGCTTTCAAGGGTTCACTTGGACCTTGCAGCAGTTG
GCTAAGCTACTGGAGAAAATGCCCGACGACAAGGACATACTGGAGCTGTA
TGGCTTGACAAAGAATTGGTTCGGGCAGCTGCTGATGAAGCAGGGAAAAT
ACCTGGAGGCTAAAAACCTCTTTAAGGAGGCCTTCGACACGCTCATAAAT
GTTTATGGTGCCGTTAACGACGCCTCTGTAACCATCCTAAATAACATCAG
TGTGGCGTACGTAAACCTGGAAAAGTACGCCGAGGCAAGGGAGACCCTTT
TGGAGGCCATGGAGCTGACTAAGGAGCTAAAGGATGCCACCCAGGAAGGC
ATTCTGCAGGCAAATCTGGGTTTGGTGTATCTTCGCGAGGGCCTGATGTC
GCAGGCGGAGAACGCTTGCCGACTGGCGTGGAAACTGGGAAAGCAACACC
AGAATCCCGATGCCGTAGAGCAGGCCGAGTATTGTCTCAACGAGATAAAG
ACAACCCTGAATGGAGAGAAGCGCCAGTGAGGATTCTTTTTACAGTGTAA
TTTTGACTATTTATAAAAATTTCATTTCGAAGTGAAGCACAAATTTGGAA
GGCTTAAAAAATCTCAAAAAAAAAAAAAAAA

RE67616.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15173-RA 1509 CG15173-RA 174..1441 1..1268 6325 99.9 Plus
CG15173.a 1442 CG15173.a 174..1441 1..1264 6255 99.6 Plus
CG15173.b 1428 CG15173.b 174..1079 1..906 4530 100 Plus
CG15173.b 1428 CG15173.b 1079..1427 916..1264 1745 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19042993..19043596 604..1 2975 99.5 Minus
chr2L 23010047 chr2L 19042155..19042502 1264..917 1725 99.7 Minus
chr2L 23010047 chr2L 19042775..19042942 770..603 840 100 Minus
chr2L 23010047 chr2L 19042555..19042703 916..768 730 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19044370..19044973 604..1 3020 100 Minus
2L 23513712 2L 19043532..19043883 1268..917 1745 99.7 Minus
2L 23513712 2L 19044152..19044319 770..603 840 100 Minus
2L 23513712 2L 19043936..19044084 916..768 745 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19044370..19044973 604..1 3020 100 Minus
2L 23513712 2L 19043532..19043883 1268..917 1745 99.7 Minus
2L 23513712 2L 19044152..19044319 770..603 840 100 Minus
2L 23513712 2L 19043936..19044084 916..768 745 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:52:02 has no hits.

RE67616.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:53:22 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19042154..19042502 917..1265 99 <- Minus
chr2L 19042555..19042702 769..916 99 <- Minus
chr2L 19042777..19042940 605..768 100 <- Minus
chr2L 19042993..19043596 1..604 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:46 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15173-RA 1..1110 71..1180 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:15 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15173-RA 1..1110 71..1180 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:11:42 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
Ttc19-RA 1..1110 71..1180 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:25:50 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15173-RA 1..1110 71..1180 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:12 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
Ttc19-RA 1..1110 71..1180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:27:32 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15173-RA 174..1437 1..1265 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:15 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15173-RA 174..1437 1..1265 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:11:42 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
Ttc19-RA 176..1439 1..1265 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:25:50 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15173-RA 174..1437 1..1265 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:12 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
Ttc19-RA 176..1439 1..1265 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:22 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19043535..19043883 917..1265 99 <- Minus
2L 19043936..19044083 769..916 100 <- Minus
2L 19044154..19044317 605..768 100 <- Minus
2L 19044370..19044973 1..604 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:22 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19043535..19043883 917..1265 99 <- Minus
2L 19043936..19044083 769..916 100 <- Minus
2L 19044154..19044317 605..768 100 <- Minus
2L 19044370..19044973 1..604 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:22 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19043535..19043883 917..1265 99 <- Minus
2L 19043936..19044083 769..916 100 <- Minus
2L 19044154..19044317 605..768 100 <- Minus
2L 19044370..19044973 1..604 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:11:42 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19043936..19044083 769..916 100 <- Minus
arm_2L 19044154..19044317 605..768 100 <- Minus
arm_2L 19043535..19043883 917..1265 99 <- Minus
arm_2L 19044370..19044973 1..604 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:01:26 Download gff for RE67616.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19043535..19043883 917..1265 99 <- Minus
2L 19043936..19044083 769..916 100 <- Minus
2L 19044154..19044317 605..768 100 <- Minus
2L 19044370..19044973 1..604 100   Minus

RE67616.pep Sequence

Translation from 70 to 1179

> RE67616.pep
MLVRNICKFTQVMGRFRVVVNPRDYCHLAPLKRSRYHQRSEFGCRPLCSN
AAGYEVSWAAPPASGSSGGMFWAFSAAFTLNLFGGADEKEETPEEKLIKT
IKRSILCIQREQYDKAEQMLHLALRMAQDIQSKDGITYVFDLMANLAMER
EQFKKAEKIFTDVMKRLFAEGHTEESPKILHISSKIAHMSQLQGDLEKSF
QGFTWTLQQLAKLLEKMPDDKDILELYGLTKNWFGQLLMKQGKYLEAKNL
FKEAFDTLINVYGAVNDASVTILNNISVAYVNLEKYAEARETLLEAMELT
KELKDATQEGILQANLGLVYLREGLMSQAENACRLAWKLGKQHQNPDAVE
QAEYCLNEIKTTLNGEKRQ*

RE67616.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15216-PA 359 GF15216-PA 1..359 1..369 1523 78 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21659-PA 357 GG21659-PA 1..357 13..369 1820 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10833-PA 581 GH10833-PA 288..580 74..364 1244 78.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ttc19-PA 369 CG15173-PA 1..369 1..369 1907 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17348-PA 369 GI17348-PA 1..369 1..365 1208 64.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19222-PA 370 GL19222-PA 1..368 1..367 1486 75.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13549-PA 370 GA13549-PA 1..368 1..367 1486 75.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17038-PA 357 GM17038-PA 1..357 13..369 1789 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21786-PA 370 GD21786-PA 1..370 1..369 1909 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16112-PA 371 GJ16112-PA 1..371 1..368 1306 66.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24841-PA 376 GK24841-PA 1..376 1..365 1411 73.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12679-PA 369 GE12679-PA 1..369 1..369 1893 94.3 Plus

RE67616.hyp Sequence

Translation from 70 to 1179

> RE67616.hyp
MLVRNICKFTQVMGRFRVVVNPRDYCHLAPLKRSRYHQRSEFGCRPLCSN
AAGYEVSWAAPPASGSSGGMFWAFSAAFTLNLFGGADEKEETPEEKLIKT
IKRSILCIQREQYDKAEQMLHLALRMAQDIQSKDGITYVFDLMANLAMER
EQFKKAEKIFTDVMKRLFAEGHTEESPKILHISSKIAHMSQLQGDLEKSF
QGFTWTLQQLAKLLEKMPDDKDILELYGLTKNWFGQLLMKQGKYLEAKNL
FKEAFDTLINVYGAVNDASVTILNNISVAYVNLEKYAEARETLLEAMELT
KELKDATQEGILQANLGLVYLREGLMSQAENACRLAWKLGKQHQNPDAVE
QAEYCLNEIKTTLNGEKRQ*

RE67616.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Ttc19-PA 369 CG15173-PA 1..369 1..369 1907 100 Plus