BDGP Sequence Production Resources |
Search the DGRC for RE67616
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 676 |
Well: | 16 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ttc19-RA |
Protein status: | RE67616.pep: gold |
Preliminary Size: | 1074 |
Sequenced Size: | 1281 |
Gene | Date | Evidence |
---|---|---|
CG15173 | 2001-12-16 | Blastp of sequenced clone |
CG15173 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15173 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15173 | 2008-04-29 | Release 5.5 accounting |
CG15173 | 2008-08-15 | Release 5.9 accounting |
CG15173 | 2008-12-18 | 5.12 accounting |
1281 bp (1281 high quality bases) assembled on 2001-12-16
GenBank Submission: AY071630
> RE67616.complete ATTTCATAATTTTTAATACCATACCTGCAACATTATAGGTTTTAGTTAAA TAATTAATAAAGCCCTAAACATGTTAGTGAGAAATATTTGCAAGTTTACG CAAGTTATGGGCAGGTTCCGCGTTGTCGTGAATCCCAGAGATTACTGTCA TCTTGCGCCGCTGAAGAGAAGCCGTTATCACCAACGGTCAGAATTCGGAT GTCGACCGCTGTGCTCCAATGCTGCGGGCTACGAGGTGTCCTGGGCAGCT CCGCCCGCTTCTGGCTCTTCCGGTGGAATGTTTTGGGCATTTTCCGCTGC TTTCACTCTGAATCTGTTTGGTGGCGCCGACGAAAAAGAGGAAACTCCGG AGGAAAAACTGATCAAGACCATCAAACGATCAATCCTGTGCATTCAGAGG GAACAGTACGACAAGGCCGAGCAAATGCTTCACCTGGCTCTGCGAATGGC GCAGGATATTCAGAGCAAGGACGGCATCACATATGTGTTTGATCTGATGG CCAATTTGGCCATGGAACGCGAGCAGTTTAAGAAGGCGGAGAAGATATTC ACGGACGTTATGAAACGGCTTTTTGCCGAGGGTCACACCGAAGAGAGTCC CAAGATACTTCACATCAGCTCCAAGATAGCACACATGTCTCAGCTGCAAG GGGATCTGGAAAAGAGCTTTCAAGGGTTCACTTGGACCTTGCAGCAGTTG GCTAAGCTACTGGAGAAAATGCCCGACGACAAGGACATACTGGAGCTGTA TGGCTTGACAAAGAATTGGTTCGGGCAGCTGCTGATGAAGCAGGGAAAAT ACCTGGAGGCTAAAAACCTCTTTAAGGAGGCCTTCGACACGCTCATAAAT GTTTATGGTGCCGTTAACGACGCCTCTGTAACCATCCTAAATAACATCAG TGTGGCGTACGTAAACCTGGAAAAGTACGCCGAGGCAAGGGAGACCCTTT TGGAGGCCATGGAGCTGACTAAGGAGCTAAAGGATGCCACCCAGGAAGGC ATTCTGCAGGCAAATCTGGGTTTGGTGTATCTTCGCGAGGGCCTGATGTC GCAGGCGGAGAACGCTTGCCGACTGGCGTGGAAACTGGGAAAGCAACACC AGAATCCCGATGCCGTAGAGCAGGCCGAGTATTGTCTCAACGAGATAAAG ACAACCCTGAATGGAGAGAAGCGCCAGTGAGGATTCTTTTTACAGTGTAA TTTTGACTATTTATAAAAATTTCATTTCGAAGTGAAGCACAAATTTGGAA GGCTTAAAAAATCTCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15173-RA | 1509 | CG15173-RA | 174..1441 | 1..1268 | 6325 | 99.9 | Plus |
CG15173.a | 1442 | CG15173.a | 174..1441 | 1..1264 | 6255 | 99.6 | Plus |
CG15173.b | 1428 | CG15173.b | 174..1079 | 1..906 | 4530 | 100 | Plus |
CG15173.b | 1428 | CG15173.b | 1079..1427 | 916..1264 | 1745 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 19042993..19043596 | 604..1 | 2975 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 19042155..19042502 | 1264..917 | 1725 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 19042775..19042942 | 770..603 | 840 | 100 | Minus |
chr2L | 23010047 | chr2L | 19042555..19042703 | 916..768 | 730 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19044370..19044973 | 604..1 | 3020 | 100 | Minus |
2L | 23513712 | 2L | 19043532..19043883 | 1268..917 | 1745 | 99.7 | Minus |
2L | 23513712 | 2L | 19044152..19044319 | 770..603 | 840 | 100 | Minus |
2L | 23513712 | 2L | 19043936..19044084 | 916..768 | 745 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19044370..19044973 | 604..1 | 3020 | 100 | Minus |
2L | 23513712 | 2L | 19043532..19043883 | 1268..917 | 1745 | 99.7 | Minus |
2L | 23513712 | 2L | 19044152..19044319 | 770..603 | 840 | 100 | Minus |
2L | 23513712 | 2L | 19043936..19044084 | 916..768 | 745 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 19042154..19042502 | 917..1265 | 99 | <- | Minus |
chr2L | 19042555..19042702 | 769..916 | 99 | <- | Minus |
chr2L | 19042777..19042940 | 605..768 | 100 | <- | Minus |
chr2L | 19042993..19043596 | 1..604 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15173-RA | 1..1110 | 71..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15173-RA | 1..1110 | 71..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ttc19-RA | 1..1110 | 71..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15173-RA | 1..1110 | 71..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ttc19-RA | 1..1110 | 71..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15173-RA | 174..1437 | 1..1265 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15173-RA | 174..1437 | 1..1265 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ttc19-RA | 176..1439 | 1..1265 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15173-RA | 174..1437 | 1..1265 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ttc19-RA | 176..1439 | 1..1265 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19043535..19043883 | 917..1265 | 99 | <- | Minus |
2L | 19043936..19044083 | 769..916 | 100 | <- | Minus |
2L | 19044154..19044317 | 605..768 | 100 | <- | Minus |
2L | 19044370..19044973 | 1..604 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19043535..19043883 | 917..1265 | 99 | <- | Minus |
2L | 19043936..19044083 | 769..916 | 100 | <- | Minus |
2L | 19044154..19044317 | 605..768 | 100 | <- | Minus |
2L | 19044370..19044973 | 1..604 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19043535..19043883 | 917..1265 | 99 | <- | Minus |
2L | 19043936..19044083 | 769..916 | 100 | <- | Minus |
2L | 19044154..19044317 | 605..768 | 100 | <- | Minus |
2L | 19044370..19044973 | 1..604 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 19043936..19044083 | 769..916 | 100 | <- | Minus |
arm_2L | 19044154..19044317 | 605..768 | 100 | <- | Minus |
arm_2L | 19043535..19043883 | 917..1265 | 99 | <- | Minus |
arm_2L | 19044370..19044973 | 1..604 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19043535..19043883 | 917..1265 | 99 | <- | Minus |
2L | 19043936..19044083 | 769..916 | 100 | <- | Minus |
2L | 19044154..19044317 | 605..768 | 100 | <- | Minus |
2L | 19044370..19044973 | 1..604 | 100 | Minus |
Translation from 70 to 1179
> RE67616.pep MLVRNICKFTQVMGRFRVVVNPRDYCHLAPLKRSRYHQRSEFGCRPLCSN AAGYEVSWAAPPASGSSGGMFWAFSAAFTLNLFGGADEKEETPEEKLIKT IKRSILCIQREQYDKAEQMLHLALRMAQDIQSKDGITYVFDLMANLAMER EQFKKAEKIFTDVMKRLFAEGHTEESPKILHISSKIAHMSQLQGDLEKSF QGFTWTLQQLAKLLEKMPDDKDILELYGLTKNWFGQLLMKQGKYLEAKNL FKEAFDTLINVYGAVNDASVTILNNISVAYVNLEKYAEARETLLEAMELT KELKDATQEGILQANLGLVYLREGLMSQAENACRLAWKLGKQHQNPDAVE QAEYCLNEIKTTLNGEKRQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15216-PA | 359 | GF15216-PA | 1..359 | 1..369 | 1523 | 78 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21659-PA | 357 | GG21659-PA | 1..357 | 13..369 | 1820 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10833-PA | 581 | GH10833-PA | 288..580 | 74..364 | 1244 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ttc19-PA | 369 | CG15173-PA | 1..369 | 1..369 | 1907 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17348-PA | 369 | GI17348-PA | 1..369 | 1..365 | 1208 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19222-PA | 370 | GL19222-PA | 1..368 | 1..367 | 1486 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13549-PA | 370 | GA13549-PA | 1..368 | 1..367 | 1486 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17038-PA | 357 | GM17038-PA | 1..357 | 13..369 | 1789 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21786-PA | 370 | GD21786-PA | 1..370 | 1..369 | 1909 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16112-PA | 371 | GJ16112-PA | 1..371 | 1..368 | 1306 | 66.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24841-PA | 376 | GK24841-PA | 1..376 | 1..365 | 1411 | 73.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12679-PA | 369 | GE12679-PA | 1..369 | 1..369 | 1893 | 94.3 | Plus |
Translation from 70 to 1179
> RE67616.hyp MLVRNICKFTQVMGRFRVVVNPRDYCHLAPLKRSRYHQRSEFGCRPLCSN AAGYEVSWAAPPASGSSGGMFWAFSAAFTLNLFGGADEKEETPEEKLIKT IKRSILCIQREQYDKAEQMLHLALRMAQDIQSKDGITYVFDLMANLAMER EQFKKAEKIFTDVMKRLFAEGHTEESPKILHISSKIAHMSQLQGDLEKSF QGFTWTLQQLAKLLEKMPDDKDILELYGLTKNWFGQLLMKQGKYLEAKNL FKEAFDTLINVYGAVNDASVTILNNISVAYVNLEKYAEARETLLEAMELT KELKDATQEGILQANLGLVYLREGLMSQAENACRLAWKLGKQHQNPDAVE QAEYCLNEIKTTLNGEKRQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ttc19-PA | 369 | CG15173-PA | 1..369 | 1..369 | 1907 | 100 | Plus |