Clone RE67722 Report

Search the DGRC for RE67722

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:677
Well:22
Vector:pFlc-1
Associated Gene/TranscriptelB-RC
Protein status:RE67722.pep: gold
Sequenced Size:3336

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4220 2002-08-23 Blastp of sequenced clone
CG4220 2003-01-01 Sim4 clustering to Release 3
elB 2008-04-29 Release 5.5 accounting
elB 2008-08-15 Release 5.9 accounting
elB 2008-12-18 5.12 accounting

Clone Sequence Records

RE67722.complete Sequence

3336 bp (3336 high quality bases) assembled on 2005-08-22

GenBank Submission: BT001713

> RE67722.complete
AGTCGAATTTCGTTATTTCACGTTTAAAGTTCGTACGTGCGCTGAACGGA
CGGACTGCTACGACCGGAGTGTTGTGTTGTGAGTGCGAAAGCGTAAAATC
GGCCAGGCGGATACATATGCACTTCCCCCAAACGCAAAAAAAAAAAAATT
TTCAAAATATATACGAGAAAGTCAACACAATCGCCTATTTTTTAAGTCGT
TTTCGAGTGATCCTTGTGCTTTATCAAAATTAGACTGAGTTTAAAACAAA
GTATACATGTGAAACAAAATTAGCTCAGTAAATAGCAAACTTTTGGATAA
CCCCACGTTCCCGGAACCATCTAATAACGTACGTGCCTCATCATAAAACG
CGCCCTCAACGAGGCATTCGAGCGAAACCACTAACCAAAAACGGCCAAGC
CAAAGAAATAAATAAAGTACATACATACCTATGTATATCTAACAAAAGGA
AAACCCATAAATGAATACATTGTAAAAGCCCATGCGTGAATCAAACGTAA
ATATTGTAGATGCAAGCCAGCAAAGAAAGTAGTGTGTAAATTCTTTTTTA
CACACATATGTATCGTGTACACATATAAATAATAAATACCGCTGAGGCAA
TTATAATACTTAATGAATTTATTGCACAATTAAAGCGAAGCCAGCATATC
ACAACAACAAATTAATATGCCGCTGGCGTGAAAGTCACAACTCGACGCAT
GAGAAATCCCCCCTGCGCCACAGCACTGAATTATTAATGAAATCGAATTA
CAAACAAAGCCCAGCAAGCATCAGCAATAATGATTGCGAATCGAAATCGG
AATAAATAATAAAAAGAGGAAAAATAAAAAATAAACACAATAATAAATTA
TCATAAATAAGTACTCACATCAACGAGAACCGCGAAACGTGGACGGCTTA
ATCAGCGAAAAGTCAGGCAGCTGGAAAATATTTCAAGCAAGGCGCAGGCG
CCGCTTTTCACACGAGTTGGCAGCACACGCCACATAAATTGGCACTTACC
GTTAAGCGCACTGCCGTACTTTGCGGTCGGGACAAAAGCAACAACCACTC
AACACCTCCACCGAACCACCAAAGAAAAGCCGTCAAAGTGGATTTAACAA
ATTATAATAAAATGCTGCAATCCAGCAATCATCATTATTTAAGACCGGAT
TATATGACAGCTGCAGCTGCCCCAACAGCGCTGGACAACAAAAGCAGTCC
GTTGGCGCTATTGGCCCAAACATGCAGCGCCATCGGGGCGGATACCACAA
ACCCCAAGCTGCTGGCGGCGAACATCGAGAAGTCCACAAAGCAACTGCAG
CACCACCCAAAGGGCTCGAGTGGATCGGGTGGATCCGGCTCCTTTGGCCT
CAGCCAGCAGGCATCAATGGATGGCAGTGCACGCGATAAATCCTCACCGG
TTAGCAGTCATTCATCCAGCGTTAGCACCGGTTCCGTGGAGCAGCAGCAA
TTGCCCCCCGCCCATGGCAGCAGCAGCAGCAGCAAACCGACACCGACCAC
ATTTAAGCCCTACGAGCCGAACAACAACATCAGCAATATAACCACAGCCG
CCGATTGCGGCGCCACAAATCTCAGTAGCAACAACACCAGTGCCCAGCAG
CGGGTTAAGACCCCCAAATCGATGACGAACGGCGGTGGCCAGCGTTGCGA
CTCGAACCAAAGTGCCAGCTCGCAGCACCGGGAATCGCCGACAGCAGCCG
GCTCACTGAGAAGGACCCCCACCTCGGGCCTGGCTGGTGGTGTGATGCAG
CATAATGGCAGTCCCGGCCTGCCGCCAACCGCCTCCACCACGCCCGGTCG
CAGCAACTCCAAAGAGTCGGCCGCCATGCACAGTCCCAGTGCAGCGGCAG
CGGCAGCGGCGGCGGCTGCCCAAATCGCCAGCTCGAATCGCCTGCAGGAA
GCCGCCCTCGCCGCCGCCAAGGAGGCCAACTATGTGAAGGCTCTGCACGC
GGCCAGCCAGCAAGGATCCGCCTCAGCAGCAGCAGCTGCTGCATCCTATT
ATCCACCCGGTTACGGCAGCCCCTATTCCATGGACTTGATGACCGCCAGC
TCGTTGATGTCGCCACACCACGCCATGTTCAAGGCGTCGGCGATGAATCC
GTATCTGAACTACGCCCGAATGAAGGGGCTGACGGAGCAGTCGATGATGG
CGGCCACGCCGAATGTGTGCCGCGATCCCTATTGCACCGGATGTCCGGCC
AGTCCGCACTACATAAACAAGGCGGCAGGTCAGCCGTGTCCGGCGGGATG
TCCGCAGTGCGAGGGAGGTGGAGGCGGCGGAGGTGGTTCATCCAAATCCA
GCGGAAGCCAAGGCGGATCGGGTGGTTCATCGAGTGCGGCAGCAGCGGCG
GCGGCGGCAGCTGCCTCCTCGTACCACGCCCAGTTGGCCGCCCTGGCCGC
TGCCTCCCAGATGCCGTACGTCTGCTCGTGGATCGGCAGCGATGCCGCGT
ACTGTGGCAAGCGATTCGGCACCTCCGACGACCTGTTCCAGCATCTGCGC
ACCCATACGGCCTCCGTTCCGGACGCAGTACTGAGTGCAGCGGCCGCCGG
CGGTATACCGCCCAATCATCCGCTTTTCCAGCGCACCTATCCCACCCCGC
CGCTGAGTCCGCTGTCGGCGGCCCGTTATCATCCGTACGGTAAGCCATCG
ATGCTGCCGCCCTCGTTGGCGCCACCCGGAATGCCCGGACTGCCGCCACA
TCCGGCGCTGGCCCAATATTTTGCACCGTACTCGTTATACGGTCCCAGGA
TGGGATCTTCGCATCCGTAGTAGGCGGCTGATTGAATCGCAGCACAATGC
GAAAGTTCGGCCTTCAGTCAAACCCATCATTTCTCTTGAGTCGTCGTCGT
ATCTCTATGTGTTTTTTGGTGTATATGTATGACTCACTCGTGAAACGAAA
AGCTAGTGATCTAATGTACTGTAGTTACATACAAATGTGTTTACAATTTA
GCTTAAGGAGTCTAGCGTCTAGATATACATACATACATATATGTATCTAA
TATCGATGATATATTACATTAGTGCAGCACATCAAATATCGCTCGTCCTT
GTGTGTCTGTGTGTGTTTTGTGGTTGCTACTAAACGCAAACGGTAATTTT
AATTTAATTTATTCTATTCAAGCGATTACGATTACGGAATTAACGAAATG
AAAAGATTGTCCAAAAACTAAAAGTTGTAAAATTCTTGTAAAATATATGA
GTAACTGCTTATAATTAATTCTATACATATGCCTAAACATAAATGTGTAA
TTATGAACAATATTTTAATGTTCAATTAAGTCACTACAAAGAAATCAATA
AATCAAAGAAAATTAAATACCAAAAAAAAAAAAAAA

RE67722.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
elB-RC 3363 elB-RC 40..3363 1..3324 16605 99.9 Plus
elB.b 3365 elB.b 40..3365 1..3323 16545 99.8 Plus
elB.c 2737 elB.c 1..2737 590..3323 13600 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14389420..14390732 3321..2009 6565 100 Minus
chr2L 23010047 chr2L 14407164..14408343 1180..1 5885 99.9 Minus
chr2L 23010047 chr2L 14391020..14391851 2011..1180 4160 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14390625..14391940 3324..2009 6580 100 Minus
2L 23513712 2L 14408368..14409547 1180..1 5885 99.9 Minus
2L 23513712 2L 14392228..14393059 2011..1180 4160 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14390625..14391940 3324..2009 6580 100 Minus
2L 23513712 2L 14408368..14409547 1180..1 5885 99.9 Minus
2L 23513712 2L 14392228..14393059 2011..1180 4160 100 Minus
Blast to na_te.dros performed 2019-03-15 20:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2512 1417..1589 132 57.5 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 607..755 2361..2221 130 60 Minus

RE67722.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:29:06 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14389420..14390731 2010..3321 100 <- Minus
chr2L 14391022..14391850 1181..2009 100 <- Minus
chr2L 14407164..14408343 1..1180 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:46:06 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1..1659 1112..2770 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:13 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1..1659 1112..2770 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:13:43 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1..1659 1112..2770 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:58 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1..1659 1112..2770 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:18 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1..1659 1112..2770 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:46:04 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1..3321 1..3321 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:13 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1..3321 1..3321 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:43 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 3..3323 1..3321 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:58 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1..3321 1..3321 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:18 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 3..3323 1..3321 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:29:06 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14390628..14391939 2010..3321 100 <- Minus
2L 14392230..14393058 1181..2009 100 <- Minus
2L 14408368..14409547 1..1180 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:29:06 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14390628..14391939 2010..3321 100 <- Minus
2L 14392230..14393058 1181..2009 100 <- Minus
2L 14408368..14409547 1..1180 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:29:06 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14390628..14391939 2010..3321 100 <- Minus
2L 14392230..14393058 1181..2009 100 <- Minus
2L 14408368..14409547 1..1180 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:43 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14390628..14391939 2010..3321 100 <- Minus
arm_2L 14392230..14393058 1181..2009 100 <- Minus
arm_2L 14408368..14409547 1..1180 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:30 Download gff for RE67722.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14390628..14391939 2010..3321 100 <- Minus
2L 14392230..14393058 1181..2009 100 <- Minus
2L 14408368..14409547 1..1180 99   Minus

RE67722.pep Sequence

Translation from 1111 to 2769

> RE67722.pep
MLQSSNHHYLRPDYMTAAAAPTALDNKSSPLALLAQTCSAIGADTTNPKL
LAANIEKSTKQLQHHPKGSSGSGGSGSFGLSQQASMDGSARDKSSPVSSH
SSSVSTGSVEQQQLPPAHGSSSSSKPTPTTFKPYEPNNNISNITTAADCG
ATNLSSNNTSAQQRVKTPKSMTNGGGQRCDSNQSASSQHRESPTAAGSLR
RTPTSGLAGGVMQHNGSPGLPPTASTTPGRSNSKESAAMHSPSAAAAAAA
AAAQIASSNRLQEAALAAAKEANYVKALHAASQQGSASAAAAAASYYPPG
YGSPYSMDLMTASSLMSPHHAMFKASAMNPYLNYARMKGLTEQSMMAATP
NVCRDPYCTGCPASPHYINKAAGQPCPAGCPQCEGGGGGGGGSSKSSGSQ
GGSGGSSSAAAAAAAAAASSYHAQLAALAAASQMPYVCSWIGSDAAYCGK
RFGTSDDLFQHLRTHTASVPDAVLSAAAAGGIPPNHPLFQRTYPTPPLSP
LSAARYHPYGKPSMLPPSLAPPGMPGLPPHPALAQYFAPYSLYGPRMGSS
HP*

RE67722.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15014-PA 548 GF15014-PA 1..548 1..552 1861 83.2 Plus
Dana\GF14886-PA 541 GF14886-PA 317..540 331..551 319 40.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24258-PA 554 GG24258-PA 1..554 1..552 2088 94.6 Plus
Dere\GG25118-PA 537 GG25118-PA 311..536 329..551 315 40.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13412-PA 539 GH13412-PA 1..539 1..552 1653 73.2 Plus
Dgri\GH23905-PA 544 GH23905-PA 320..543 329..551 319 40.3 Plus
Dgri\GH13513-PA 544 GH13513-PA 320..543 329..551 319 40.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
elB-PC 552 CG4220-PC 1..552 1..552 2882 100 Plus
elB-PD 553 CG4220-PD 1..553 1..552 2870 99.8 Plus
noc-PB 537 CG4491-PB 15..536 6..551 662 35.5 Plus
noc-PA 537 CG4491-PA 15..536 6..551 662 35.5 Plus
Muc91C-PB 949 CG7709-PB 556..934 66..519 174 24.8 Plus
Muc91C-PA 950 CG7709-PA 557..935 66..519 174 24.8 Plus
Samuel-PE 846 CG31868-PE 116..497 55..431 165 23.9 Plus
Samuel-PD 846 CG31868-PD 116..497 55..431 165 23.9 Plus
Samuel-PB 968 CG31868-PB 116..497 55..431 165 23.9 Plus
Samuel-PA 968 CG31868-PA 116..497 55..431 165 23.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17650-PA 527 GI17650-PA 1..527 1..552 1480 72.3 Plus
Dmoj\GI10311-PA 524 GI10311-PA 300..523 329..551 334 41.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25769-PA 569 GL25769-PA 1..569 1..552 1695 78.4 Plus
Dper\GL25989-PA 537 GL25989-PA 312..536 329..551 324 40.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18043-PA 573 GA18043-PA 1..573 1..552 1692 77.9 Plus
Dpse\GA18219-PA 537 GA18219-PA 312..536 329..551 324 40.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14828-PA 493 GM14828-PA 1..383 1..384 1495 96.9 Plus
Dsec\GM15623-PA 537 GM15623-PA 313..536 331..551 321 40.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11969-PA 119 GD11969-PA 1..119 434..552 636 100 Plus
Dsim\GD23964-PA 537 GD23964-PA 313..536 331..551 320 40.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18215-PA 521 GJ18215-PA 1..521 1..552 1671 74.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18091-PA 566 GK18091-PA 1..566 1..552 1616 74.9 Plus
Dwil\GK18287-PA 549 GK18287-PA 319..548 329..551 317 40.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25015-PA 549 GE25015-PA 1..549 1..552 2705 97.1 Plus
Dyak\GE19034-PA 537 GE19034-PA 311..536 329..551 334 41.1 Plus

RE67722.hyp Sequence

Translation from 1111 to 2769

> RE67722.hyp
MLQSSNHHYLRPDYMTAAAAPTALDNKSSPLALLAQTCSAIGADTTNPKL
LAANIEKSTKQLQHHPKGSSGSGGSGSFGLSQQASMDGSARDKSSPVSSH
SSSVSTGSVEQQQLPPAHGSSSSSKPTPTTFKPYEPNNNISNITTAADCG
ATNLSSNNTSAQQRVKTPKSMTNGGGQRCDSNQSASSQHRESPTAAGSLR
RTPTSGLAGGVMQHNGSPGLPPTASTTPGRSNSKESAAMHSPSAAAAAAA
AAAQIASSNRLQEAALAAAKEANYVKALHAASQQGSASAAAAAASYYPPG
YGSPYSMDLMTASSLMSPHHAMFKASAMNPYLNYARMKGLTEQSMMAATP
NVCRDPYCTGCPASPHYINKAAGQPCPAGCPQCEGGGGGGGGSSKSSGSQ
GGSGGSSSAAAAAAAAAASSYHAQLAALAAASQMPYVCSWIGSDAAYCGK
RFGTSDDLFQHLRTHTASVPDAVLSAAAAGGIPPNHPLFQRTYPTPPLSP
LSAARYHPYGKPSMLPPSLAPPGMPGLPPHPALAQYFAPYSLYGPRMGSS
HP*

RE67722.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
elB-PC 552 CG4220-PC 1..552 1..552 2882 100 Plus
elB-PD 553 CG4220-PD 1..553 1..552 2870 99.8 Plus
noc-PB 537 CG4491-PB 15..536 6..551 662 35.5 Plus
noc-PA 537 CG4491-PA 15..536 6..551 662 35.5 Plus
Muc91C-PB 949 CG7709-PB 556..934 66..519 174 24.8 Plus