Clone RE67794 Report

Search the DGRC for RE67794

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:677
Well:94
Vector:pFlc-1
Associated Gene/TranscriptCG7246-RA
Protein status:RE67794.pep: gold
Sequenced Size:2045

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7246 2001-12-14 Blastp of sequenced clone
CG7246 2002-01-01 Sim4 clustering to Release 2
CG7246 2003-01-01 Sim4 clustering to Release 3
CG7246 2008-04-29 Release 5.5 accounting
CG7246 2008-08-15 Release 5.9 accounting
CG7246 2008-12-18 5.12 accounting

Clone Sequence Records

RE67794.complete Sequence

2045 bp (2045 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071633

> RE67794.complete
GACAATCGATAAACGGCCGTTGCGTTGCACGTGCGCTAGTTTTTAAAGAA
ATAAACAATATTACTAAGTACGATTAAGGAGAAAACTAAGCAAATATGGC
CGAGTTCATAGCTGAGATGCAGGAGCGCCTGCTGCCGGAATACGAGCAGA
TGAAGAACTACAGCGTATTCACAGCGGATCAGGTCAGAGAAATCGTTAGC
AGGCGGGAACGCTTGTTCCTTAAGATCAACAAGAGCCACCAGAGCATCAC
CGACTACCTGGACTTCATACTGTACGAGAAGCACATGCACATGACCATCG
TGGACAAGGAAAAGAAGATGCACGTTAAACTCACCGGTCTAAAGGCCTCC
ATAGCCACGCGGATCATGCGCCTGTACAGAGAGGCCTTGGCTAAGTTTAA
CCACGACAGACGGCTGTGGAGCAACTGGATCAAGTTCAGCAGGAAGTCAA
ATCCTGTCGAGGTGGCGGGCATATACGAGAAGATGCTGCTGTACCATGGC
GACTCGCCGGATCTTTGGGTGGACGCCGCCTTATGGCTGTACGAGTTCAA
TCGGCTCAACATCGATCGAGTCAAGGACATCCTGCTGCGTGGCTTGCAGA
GACATCCGGATTCCGAGGCACTTAACAAGTGCTTCTTTGACATTATGCTG
AAAGAGGCTGCCCTGGCCAGCAACGAACGCAATTTAGCCGAGAATACGCT
CTCGGAACAGGACATCAAATTGGAACGCGTGGAGGCGGTCTACCGCAACA
GCATGGCCAATATTACCCAATTGGACTACTTTGTTAAGCTTCTAGAAAGC
TGTGAGGATCATCAGGAGCTGACGGGCAAGCTGCAGCGAATGATAATCGA
TGATATGCAAGAGAAGTTCCCCCGGGAGCCGGGCCTGTGGGATTTGCTTG
CCCAGCGAGAGTTGCGCGGCTTTCATCTGGGCGACCTGGAGGAGGAGGAC
TTGGATACCAGTGACGAAGAGCCGGCCAGCAAGAAATCTCGTTCCGTAAA
TGGCCGCTCTCTCAAGCGACGCATTCAACTCTGCGTTACTGTATACAAAT
CGGCGGTGGAGGAGCTGCAAACGACAGAAATGTGGAATATGTATTTGGAT
GCCATGCTGGCACTCAATAGCGATGGAAAGACGGAGCGTATACTAAAGCA
ACAGTGCCTAGCGGATGCCTTGCAGGCGGGCCATCGCTCTCAGTTGATGG
GCGTGAAACACTATGCCACATTAAGAAAGATGCTCTGCACTGCTCCGAGT
GGAAGGGAGGCAGCTGTCACCATACTCACGGAAGCCCTGAAAAACGATTC
ATCGGTGGAGATGCACGAGCTTCTTCTGGCCACGCACATTCAAAGCGACA
GTGAGCCCTTGATCTATGAGCTATTCAACAAGATCCAGAAGAGCATGGGC
AGTGAGGCGTTGCCGCTGTGGCGCAGTGTCATTCTGTATTATCGCACTCG
GCAGGATAGCTTGGGCGCACGCCGGCTGGATGAGATCTACGGTCTCGCCT
GCAAGGCTGCGTGGCCGGAATTTGGTGAGCTGCGCTCCGATTATTTGCGC
TATCTGTGGCAGGAGCGGTCTGTCGAGGAAGCACGCAAGGAGTACGCCAA
GCTGGCCATTCTACCGCCCATGTCGTTGGCGCTGCACCGCCAAATGGTTC
AGCTGGAGTCCAGTGCGGCAGCTTGTGACCAGGCCAGCCTGAAATACTGG
CGCATGTGCTACGACTTTATGGCCTGCTATTTCGGCAAGACACAGCCGCG
CGTTTGGGTGGAGTATCTCGCCTTCGAGCGAGATCACGGCGAGGCGAAGA
ACATCTCCCTGCTCACCCAGCGGGCTCTCAGCACCCTAGAGCCTCAATAT
GTCGCCGCGTTTGAGGCGGAACGGGCACTGGCCTATGTGGGCGCATCGAT
ATAGTTGGCTAAATAGTTTATTTGTGCTTCTGTTTTTTTCATTAACTTAA
TTTCTAAGTCGATCTTTCGGACTGTCTATAGTGATTCGATTCTAAAATAA
GGACTTGTGAATATACAGCTTATAAGGTAAAAAAAAAAAAAAAAA

RE67794.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7246-RA 2106 CG7246-RA 36..2065 1..2030 10135 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8971048..8972238 1677..487 5850 99.4 Minus
chrX 22417052 chrX 8970638..8970987 2026..1677 1690 98.9 Minus
chrX 22417052 chrX 8972298..8972604 491..185 1460 98.4 Minus
chrX 22417052 chrX 8972659..8972845 187..1 935 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9079245..9080435 1677..487 5940 99.9 Minus
X 23542271 X 9078821..9079174 2030..1677 1755 99.7 Minus
X 23542271 X 9080495..9080801 491..185 1535 100 Minus
X 23542271 X 9080856..9081042 187..1 935 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9087343..9088533 1677..487 5940 99.9 Minus
X 23527363 X 9086919..9087272 2030..1677 1755 99.7 Minus
X 23527363 X 9088593..9088899 491..185 1535 100 Minus
X 23527363 X 9088954..9089140 187..1 935 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:36:00 has no hits.

RE67794.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:36:52 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8970636..8970987 1677..2028 98 <- Minus
chrX 8971049..8972233 492..1676 99 <- Minus
chrX 8972298..8972601 188..491 98 <- Minus
chrX 8972659..8972845 1..187 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:56 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7246-RA 1..1809 96..1904 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:28 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7246-RA 1..1809 96..1904 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:26 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7246-RA 1..1809 96..1904 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:35:42 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7246-RA 1..1809 96..1904 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:55 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7246-RA 1..1809 96..1904 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:41:45 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7246-RA 1..2028 1..2028 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:28 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7246-RA 17..2044 1..2028 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:26 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7246-RA 16..2043 1..2028 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:35:42 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7246-RA 1..2028 1..2028 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:55 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7246-RA 16..2043 1..2028 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:52 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
X 9078823..9079174 1677..2028 99 <- Minus
X 9079246..9080430 492..1676 100 <- Minus
X 9080495..9080798 188..491 100 <- Minus
X 9080856..9081042 1..187 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:52 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
X 9078823..9079174 1677..2028 99 <- Minus
X 9079246..9080430 492..1676 100 <- Minus
X 9080495..9080798 188..491 100 <- Minus
X 9080856..9081042 1..187 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:52 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
X 9078823..9079174 1677..2028 99 <- Minus
X 9079246..9080430 492..1676 100 <- Minus
X 9080495..9080798 188..491 100 <- Minus
X 9080856..9081042 1..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:26 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8972856..8973207 1677..2028 99 <- Minus
arm_X 8973279..8974463 492..1676 100 <- Minus
arm_X 8974528..8974831 188..491 100 <- Minus
arm_X 8974889..8975075 1..187 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:13:00 Download gff for RE67794.complete
Subject Subject Range Query Range Percent Splice Strand
X 9086921..9087272 1677..2028 99 <- Minus
X 9087344..9088528 492..1676 100 <- Minus
X 9088593..9088896 188..491 100 <- Minus
X 9088954..9089140 1..187 100   Minus

RE67794.pep Sequence

Translation from 95 to 1903

> RE67794.pep
MAEFIAEMQERLLPEYEQMKNYSVFTADQVREIVSRRERLFLKINKSHQS
ITDYLDFILYEKHMHMTIVDKEKKMHVKLTGLKASIATRIMRLYREALAK
FNHDRRLWSNWIKFSRKSNPVEVAGIYEKMLLYHGDSPDLWVDAALWLYE
FNRLNIDRVKDILLRGLQRHPDSEALNKCFFDIMLKEAALASNERNLAEN
TLSEQDIKLERVEAVYRNSMANITQLDYFVKLLESCEDHQELTGKLQRMI
IDDMQEKFPREPGLWDLLAQRELRGFHLGDLEEEDLDTSDEEPASKKSRS
VNGRSLKRRIQLCVTVYKSAVEELQTTEMWNMYLDAMLALNSDGKTERIL
KQQCLADALQAGHRSQLMGVKHYATLRKMLCTAPSGREAAVTILTEALKN
DSSVEMHELLLATHIQSDSEPLIYELFNKIQKSMGSEALPLWRSVILYYR
TRQDSLGARRLDEIYGLACKAAWPEFGELRSDYLRYLWQERSVEEARKEY
AKLAILPPMSLALHRQMVQLESSAAACDQASLKYWRMCYDFMACYFGKTQ
PRVWVEYLAFERDHGEAKNISLLTQRALSTLEPQYVAAFEAERALAYVGA
SI*

RE67794.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19113-PA 605 GF19113-PA 1..603 1..602 2650 79.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19006-PA 602 GG19006-PA 1..602 1..602 3140 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17712-PA 612 GH17712-PA 1..607 1..602 1975 60.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7246-PA 602 CG7246-PA 1..602 1..602 3103 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15455-PA 610 GI15455-PA 1..608 1..602 2081 63.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13022-PA 511 GL13022-PA 1..509 94..602 2174 79.8 Plus
Dper\GL13021-PA 77 GL13021-PA 1..73 1..73 297 76.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20208-PA 604 GA20208-PA 1..602 1..602 2629 80.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13683-PA 320 GM13683-PA 1..276 1..297 1366 88.6 Plus
Dsec\GM13684-PA 235 GM13684-PA 1..235 368..602 1256 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16086-PA 534 GD16086-PA 237..534 305..602 1585 99.3 Plus
Dsim\GD16086-PA 534 GD16086-PA 1..235 1..235 1245 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19170-PA 609 GJ19170-PA 1..607 1..602 2086 63.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16741-PA 601 GK16741-PA 1..599 1..602 2230 67.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17419-PA 602 GE17419-PA 1..602 1..602 3128 96.8 Plus

RE67794.hyp Sequence

Translation from 95 to 1903

> RE67794.hyp
MAEFIAEMQERLLPEYEQMKNYSVFTADQVREIVSRRERLFLKINKSHQS
ITDYLDFILYEKHMHMTIVDKEKKMHVKLTGLKASIATRIMRLYREALAK
FNHDRRLWSNWIKFSRKSNPVEVAGIYEKMLLYHGDSPDLWVDAALWLYE
FNRLNIDRVKDILLRGLQRHPDSEALNKCFFDIMLKEAALASNERNLAEN
TLSEQDIKLERVEAVYRNSMANITQLDYFVKLLESCEDHQELTGKLQRMI
IDDMQEKFPREPGLWDLLAQRELRGFHLGDLEEEDLDTSDEEPASKKSRS
VNGRSLKRRIQLCVTVYKSAVEELQTTEMWNMYLDAMLALNSDGKTERIL
KQQCLADALQAGHRSQLMGVKHYATLRKMLCTAPSGREAAVTILTEALKN
DSSVEMHELLLATHIQSDSEPLIYELFNKIQKSMGSEALPLWRSVILYYR
TRQDSLGARRLDEIYGLACKAAWPEFGELRSDYLRYLWQERSVEEARKEY
AKLAILPPMSLALHRQMVQLESSAAACDQASLKYWRMCYDFMACYFGKTQ
PRVWVEYLAFERDHGEAKNISLLTQRALSTLEPQYVAAFEAERALAYVGA
SI*

RE67794.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7246-PA 602 CG7246-PA 1..602 1..602 3103 100 Plus