Clone RE67859 Report

Search the DGRC for RE67859

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:678
Well:59
Vector:pFlc-1
Associated Gene/TranscriptCG14450-RA
Protein status:RE67859.pep: gold
Preliminary Size:1146
Sequenced Size:1497

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14450 2001-12-14 Blastp of sequenced clone
CG14450 2002-01-01 Sim4 clustering to Release 2
CG14450 2003-01-01 Sim4 clustering to Release 3
CG14450 2008-04-29 Release 5.5 accounting
CG14450 2008-08-15 Release 5.9 accounting
CG14450 2008-12-18 5.12 accounting

Clone Sequence Records

RE67859.complete Sequence

1497 bp (1497 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071634

> RE67859.complete
ATTGACGATATCAAATTAAGTAACAACAAATATAAATCATATACTGGAAA
ATATGTTGTGCCGGCGATCATTGTTGGGCGTAACGACAAAATGCCTAAGA
CTTTCGTCCACGCAGCAACACAGATCGGGTCAGCCGGAATGTGACCAAGC
CATCGGCCTCTTGCCCGCCTACTCGGATGCAGATCGTTTGAAGATCTTGA
AGACGATTAATGAAAGCAGCATGAATCAGATAGCCAACTACGACATAACC
AAGGCAAGGGCAACCAAGCTGCAAAACTGGAAGAACCGTCACGGACCGCT
GCAGGAACTCAGCGACATCCTGTATGTGGAGGGATTCGGACTGAAGGTGA
CCACCAAGTTCTTTAAGAGTCTGCTTGCGCCGCCGAGCAGTGGGAGCGCA
CAAGTAGGGGAAAATAGACCAAAGACTGCACGAGTCGCGCCCTTTATAAC
ACCGGCCATGGACGAGGGACAGCGTTCACGTATTGTATCTGCTGTAGGGG
TGCGCATCGGAGTGACCAGTGTAAGCTGGGCGCGATTAAAGATCGGAAGC
AACGAAGCTCCCTGTCTGCTCACGCACTGGCAGCACCATGAGCTGAACGA
CAAGAAGCTGCATTTGTCAGAACTTTCCCGCCGATGCCTCTATGTATCTC
ACCAGATACCCGTGGCCGATTGCTACGTCATGGAGAGTCCACAAATGGCC
CAGGCCAGCAGCAACCCAGGGAGCATCGATCAACAGAACGTGAACATCCA
GAAGGCCCAGGTTTCCGCAATCATGAGCTTCTCCTTGATGGCCCGATCAG
ATGGCGACGAGAACAAGACGAACAACGTCTACTACATGCGACGTTTTCTC
TCAGCCCGACTATTTAATCACATGGTGGGTACTGAGCGCGTGTCGTCCGA
GGATACGATATTGGCCATGATGCGAACCCATTACAACGTGGAACATCAGA
TCCCCGAAACAGAGCCCCCGTTGAAGCTGCACAAACAGATCGACTTTCCC
GCTGACCTACGCCTCGAATTCTCACAACAAGAGCGCTACCAGCGCGAGCT
TCTAGGCCAGGCACTTCTCCTCAGCTTAGCCTTTACTCGTCTCGTGCTTC
AGCAAGATCCGCAAAGCATTGCATCTGTATCTCGCAACTCTAAAAACTCC
TCTCCAAGTCGAGCCACTTAAAAAGCTACAAGTGTAAGAATATGAACTCG
ACTCTTTTTGGCCTTTGCACTTTGTATTATAATGACCCGTTGAACAATTT
TATGCACAATATTTAACAGGGGTTTTAATAGGAGCAGTTTCTAATGGCAC
AACTGCATTTCCATGGAATACCATAAACATAGATTATTTTGAGCTTGGCC
CCACTTAGCTAATTAGAATTTGTCGCCATCAAAAATATCATGTCTTTCTT
TCATTACTGCCCACATATTAGGTCTTAAAAATATTTATTTAGCAGAACTA
AAATAAATAAATACTTGATGCTGGCCCTGTCAAAAAAAAAAAAAAAA

RE67859.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14450-RA 1673 CG14450-RA 154..1631 4..1481 7390 100 Plus
nc_14201.a 637 nc_14201.a 1..637 26..658 3100 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22715137..22716384 1481..234 6225 99.9 Minus
chr3L 24539361 chr3L 22716435..22716668 237..4 1170 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22726234..22727481 1481..234 6225 99.9 Minus
3L 28110227 3L 22727532..22727765 237..4 1170 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22719334..22720581 1481..234 6225 99.9 Minus
3L 28103327 3L 22720632..22720865 237..4 1170 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:10:21 has no hits.

RE67859.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:11:04 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22715137..22716380 238..1481 100 <- Minus
chr3L 22716435..22716671 1..237 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:58 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 1..1119 53..1171 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:09:57 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 1..1119 53..1171 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:59:22 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 1..1119 53..1171 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:08 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 1..1119 53..1171 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:11 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 1..1119 53..1171 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:36 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 12..1492 1..1481 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:09:57 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 7..1487 1..1481 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:59:22 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 22..1502 1..1481 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:08 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 12..1492 1..1481 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:11 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
CG14450-RA 22..1502 1..1481 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:11:04 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22726234..22727477 238..1481 100 <- Minus
3L 22727532..22727768 1..237 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:11:04 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22726234..22727477 238..1481 100 <- Minus
3L 22727532..22727768 1..237 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:11:04 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22726234..22727477 238..1481 100 <- Minus
3L 22727532..22727768 1..237 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:59:22 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22720632..22720868 1..237 99   Minus
arm_3L 22719334..22720577 238..1481 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:17 Download gff for RE67859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22719334..22720577 238..1481 100 <- Minus
3L 22720632..22720868 1..237 99   Minus

RE67859.pep Sequence

Translation from 52 to 1170

> RE67859.pep
MLCRRSLLGVTTKCLRLSSTQQHRSGQPECDQAIGLLPAYSDADRLKILK
TINESSMNQIANYDITKARATKLQNWKNRHGPLQELSDILYVEGFGLKVT
TKFFKSLLAPPSSGSAQVGENRPKTARVAPFITPAMDEGQRSRIVSAVGV
RIGVTSVSWARLKIGSNEAPCLLTHWQHHELNDKKLHLSELSRRCLYVSH
QIPVADCYVMESPQMAQASSNPGSIDQQNVNIQKAQVSAIMSFSLMARSD
GDENKTNNVYYMRRFLSARLFNHMVGTERVSSEDTILAMMRTHYNVEHQI
PETEPPLKLHKQIDFPADLRLEFSQQERYQRELLGQALLLSLAFTRLVLQ
QDPQSIASVSRNSKNSSPSRAT*

RE67859.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23449-PA 346 GF23449-PA 6..340 36..372 1081 61.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13172-PA 373 GG13172-PA 1..373 1..372 1636 85.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16761-PA 375 GH16761-PA 8..366 4..364 1155 62 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14450-PA 372 CG14450-PA 1..372 1..372 1902 100 Plus
CG14450-PB 62 CG14450-PB 1..61 1..61 309 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13422-PA 322 GI13422-PA 11..313 59..364 1093 67.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18119-PA 383 GL18119-PA 31..375 31..371 1284 69.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12996-PA 383 GA12996-PA 31..375 31..371 1276 68.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22082-PA 372 GM22082-PA 1..372 1..372 1835 94.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12057-PA 372 GD12057-PA 1..372 1..372 1829 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11782-PA 374 GJ11782-PA 7..365 4..364 1155 61.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20570-PA 448 GK20570-PA 9..359 2..367 1010 55.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19493-PA 373 GE19493-PA 1..373 1..372 1624 84.8 Plus

RE67859.hyp Sequence

Translation from 52 to 1170

> RE67859.hyp
MLCRRSLLGVTTKCLRLSSTQQHRSGQPECDQAIGLLPAYSDADRLKILK
TINESSMNQIANYDITKARATKLQNWKNRHGPLQELSDILYVEGFGLKVT
TKFFKSLLAPPSSGSAQVGENRPKTARVAPFITPAMDEGQRSRIVSAVGV
RIGVTSVSWARLKIGSNEAPCLLTHWQHHELNDKKLHLSELSRRCLYVSH
QIPVADCYVMESPQMAQASSNPGSIDQQNVNIQKAQVSAIMSFSLMARSD
GDENKTNNVYYMRRFLSARLFNHMVGTERVSSEDTILAMMRTHYNVEHQI
PETEPPLKLHKQIDFPADLRLEFSQQERYQRELLGQALLLSLAFTRLVLQ
QDPQSIASVSRNSKNSSPSRAT*

RE67859.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14450-PA 372 CG14450-PA 1..372 1..372 1902 100 Plus
CG14450-PB 62 CG14450-PB 1..61 1..61 309 100 Plus