BDGP Sequence Production Resources |
Search the DGRC for RE67940
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 679 |
Well: | 40 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31251-RA |
Protein status: | RE67940.pep: gold |
Sequenced Size: | 1072 |
Gene | Date | Evidence |
---|---|---|
CG31251 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31251 | 2008-04-29 | Release 5.5 accounting |
CG31251 | 2008-08-15 | Release 5.9 accounting |
CG31251 | 2008-12-18 | 5.12 accounting |
1072 bp (1072 high quality bases) assembled on 2005-08-04
GenBank Submission: BT023804
> RE67940.complete AGTGTTATTGATAGACGTGAACATTAGATGTTAAGTTAAAAGCGGCCGGT TACTATTCTTACAAAAATGGACTTTCAGCGAAACGATGCTATGCTCATGG AAATTCTGCAGGATCGGAAAACTATTACAGGTTTCCTGGACTCCATTTTC GGATTTCTGCGACGCAACACCGACTTTTATCACACAAAACGCGATGAAGC GGATAAAATAGGCTTCCCCAAAGGCGTGAGGGATCAGATTCTATATGGCG CCATGCAGCGCTACGATCCGGATTGCTTGCTACAATCCCTGACCGCGGAA GGCGGTGCAGATGATGGAGAAACGGCTCCGCCTGCCGTCGAAGAAGTGGT CCTGGAAAGCGAAGATGGTCCTCAGGACGAGGAAATGAAACCCATAGAGA GCCAGCCGCCACAAAAAGGGAAGGAGCAGTCAAAGTTCTCCCCCAGCGAC TACAAAAACGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAA GGATGTGGAGGTGCAGGCTCTGCTTCCCAAGGATCATCAAACGGCGAAGA AGCTGCACATTTCAATTCAGGCCCAGCACATCAAAGTGAGCAGCAAGCAT AGCCCAGAGACGATCATCCTCGAGGGAAACCTGAGCCAGCGGATTAAACA CAAGGAGGCGGTGTGGACAATTGATCAGAACCGATTGATCATAAGTTACG ATAAAGCAAAGGAGCTCTGGTGGGATCGGCTCTTCGAAGGTGATCCAGAA ATCGATTCCAAGAAGATTGAATGCGAACGCTATATAGATGATTTGCCGGA GGAAACCCAGGCCACCATAGAAAAGCTTAGGGTCCAGCAGTTGGCAGCAG ACAAGCAACAAAATGAAATTCAGACCTCAAGTCCCGACCAAGCTATAAAC CTGGATCGCCTGAAAGCTGCCTGGGATGCCGAAGGTTCGCCGTTTAAAGG ACAGCCCTTTGATCCTTCTATCGTAAGAATGAGTTAAATTTTAAAATAAT TAATTAAGCTAGCAATAGTAGTAAAATAGTAAAAACTGAACCATATATAT TTTTATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31251-RA | 1122 | CG31251-RA | 69..1122 | 3..1056 | 5255 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 13508499..13509028 | 697..168 | 2650 | 100 | Minus |
chr3R | 27901430 | chr3R | 13508083..13508437 | 1054..700 | 1730 | 99.2 | Minus |
chr3R | 27901430 | chr3R | 13509086..13509250 | 167..3 | 810 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 17684155..17684687 | 700..168 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 17683739..17684096 | 1057..700 | 1790 | 100 | Minus |
3R | 32079331 | 3R | 17684745..17684909 | 167..3 | 810 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 17424986..17425518 | 700..168 | 2665 | 100 | Minus |
3R | 31820162 | 3R | 17424570..17424927 | 1057..700 | 1790 | 100 | Minus |
3R | 31820162 | 3R | 17425576..17425740 | 167..3 | 810 | 99.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 13508079..13508436 | 701..1056 | 92 | <- | Minus |
chr3R | 13508496..13509028 | 168..700 | 99 | <- | Minus |
chr3R | 13509086..13509252 | 1..167 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31251-RA | 1..921 | 67..987 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31251-RA | 1..921 | 67..987 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31251-RA | 1..921 | 67..987 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31251-RA | 1..921 | 67..987 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31251-RA | 1..921 | 67..987 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31251-RA | 1..987 | 1..987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31251-RA | 1..1056 | 1..1056 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31251-RA | 5..1060 | 1..1056 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31251-RA | 1..987 | 1..987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31251-RA | 5..1060 | 1..1056 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17684745..17684911 | 1..167 | 98 | Minus | |
3R | 17683740..17684095 | 701..1056 | 100 | <- | Minus |
3R | 17684155..17684687 | 168..700 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17684745..17684911 | 1..167 | 98 | Minus | |
3R | 17683740..17684095 | 701..1056 | 100 | <- | Minus |
3R | 17684155..17684687 | 168..700 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17684745..17684911 | 1..167 | 98 | Minus | |
3R | 17683740..17684095 | 701..1056 | 100 | <- | Minus |
3R | 17684155..17684687 | 168..700 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 13509462..13509817 | 701..1056 | 100 | <- | Minus |
arm_3R | 13509877..13510409 | 168..700 | 100 | <- | Minus |
arm_3R | 13510467..13510633 | 1..167 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17424571..17424926 | 701..1056 | 100 | <- | Minus |
3R | 17424986..17425518 | 168..700 | 100 | <- | Minus |
3R | 17425576..17425742 | 1..167 | 98 | Minus |
Translation from 66 to 986
> RE67940.pep MDFQRNDAMLMEILQDRKTITGFLDSIFGFLRRNTDFYHTKRDEADKIGF PKGVRDQILYGAMQRYDPDCLLQSLTAEGGADDGETAPPAVEEVVLESED GPQDEEMKPIESQPPQKGKEQSKFSPSDYKNGDVFETHCWSQTLKDVEVQ ALLPKDHQTAKKLHISIQAQHIKVSSKHSPETIILEGNLSQRIKHKEAVW TIDQNRLIISYDKAKELWWDRLFEGDPEIDSKKIECERYIDDLPEETQAT IEKLRVQQLAADKQQNEIQTSSPDQAINLDRLKAAWDAEGSPFKGQPFDP SIVRMS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17174-PA | 303 | GF17174-PA | 1..303 | 1..306 | 1196 | 73 | Plus |
Dana\GF23933-PA | 332 | GF23933-PA | 143..295 | 108..258 | 170 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16760-PA | 306 | GG16760-PA | 1..306 | 1..306 | 1464 | 88.9 | Plus |
Dere\GG13580-PA | 332 | GG13580-PA | 138..295 | 103..258 | 167 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16573-PA | 299 | GH16573-PA | 1..299 | 1..306 | 997 | 62.5 | Plus |
Dgri\GH16226-PA | 334 | GH16226-PA | 7..297 | 4..258 | 170 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31251-PA | 306 | CG31251-PA | 1..306 | 1..306 | 1607 | 100 | Plus |
nudC-PB | 332 | CG9710-PB | 26..295 | 23..258 | 194 | 27.4 | Plus |
nudC-PA | 332 | CG9710-PA | 26..295 | 23..258 | 194 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13864-PA | 305 | GI13864-PA | 1..305 | 1..306 | 1074 | 66 | Plus |
Dmoj\GI13372-PA | 334 | GI13372-PA | 20..297 | 17..258 | 162 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21703-PA | 297 | GL21703-PA | 1..297 | 1..306 | 1121 | 68.5 | Plus |
Dper\GL16069-PA | 336 | GL16069-PA | 147..299 | 108..258 | 178 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26376-PA | 294 | GA26376-PA | 1..294 | 1..306 | 1134 | 69.6 | Plus |
Dpse\GA21982-PA | 336 | GA21982-PA | 147..299 | 108..258 | 178 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15349-PA | 306 | GM15349-PA | 1..306 | 1..306 | 1546 | 94.1 | Plus |
Dsec\GM25659-PA | 332 | GM25659-PA | 143..295 | 108..258 | 183 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15097-PA | 298 | GD15097-PA | 1..298 | 9..306 | 1524 | 95.3 | Plus |
Dsim\GD14666-PA | 332 | GD14666-PA | 143..295 | 108..258 | 184 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11725-PA | 304 | GJ11725-PA | 1..304 | 1..306 | 1053 | 65.4 | Plus |
Dvir\GJ13202-PA | 334 | GJ13202-PA | 7..297 | 4..258 | 167 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13789-PA | 297 | GK13789-PA | 5..297 | 2..306 | 968 | 61.2 | Plus |
Dwil\GK23802-PA | 324 | GK23802-PA | 23..288 | 20..258 | 189 | 26.8 | Plus |
Dwil\GK12498-PA | 326 | GK12498-PA | 7..289 | 4..258 | 173 | 26.1 | Plus |
Translation from 66 to 986
> RE67940.hyp MDFQRNDAMLMEILQDRKTITGFLDSIFGFLRRNTDFYHTKRDEADKIGF PKGVRDQILYGAMQRYDPDCLLQSLTAEGGADDGETAPPAVEEVVLESED GPQDEEMKPIESQPPQKGKEQSKFSPSDYKNGDVFETHCWSQTLKDVEVQ ALLPKDHQTAKKLHISIQAQHIKVSSKHSPETIILEGNLSQRIKHKEAVW TIDQNRLIISYDKAKELWWDRLFEGDPEIDSKKIECERYIDDLPEETQAT IEKLRVQQLAADKQQNEIQTSSPDQAINLDRLKAAWDAEGSPFKGQPFDP SIVRMS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31251-PA | 306 | CG31251-PA | 1..306 | 1..306 | 1607 | 100 | Plus |
nudC-PB | 332 | CG9710-PB | 26..295 | 23..258 | 194 | 27.4 | Plus |
nudC-PA | 332 | CG9710-PA | 26..295 | 23..258 | 194 | 27.4 | Plus |