Clone RE67941 Report

Search the DGRC for RE67941

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:679
Well:41
Vector:pFlc-1
Associated Gene/TranscriptCG18048-RA
Protein status:RE67941.pep: gold
Preliminary Size:1305
Sequenced Size:1421

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18048 2002-01-01 Sim4 clustering to Release 2
CG18048 2002-03-20 Blastp of sequenced clone
CG18048 2003-01-01 Sim4 clustering to Release 3
CG18048 2008-04-29 Release 5.5 accounting
CG18048 2008-08-15 Release 5.9 accounting
CG18048 2008-12-18 5.12 accounting

Clone Sequence Records

RE67941.complete Sequence

1421 bp (1421 high quality bases) assembled on 2002-03-20

GenBank Submission: AY094893

> RE67941.complete
AGTGTGCCAGCCTTGGTCACACTGCCTGGCACGAGTTCCGAATTGGGAGG
AATTTATTTTGAAAATAAAAGTAACGAATGGAACCTGTGAAAGAGACGAT
GACCACTGTCAAGGCGGAGAAGCCGGTAACCACCACTTGCTCCTACTGGG
TGTTACGCAAAAAGCGCCGCTGCAAGATGACTGCAAACAAGGGCAGTGAG
TTTTGTGGAGCCCATGCCTCATCGGCAGCCACCACTGCAACTTGCGATGA
AAAAGCTAGAGAAGATTCCTTCCAGGAACGTATTCCCTGCCCGCTTGATC
ACAAACATACCGTGTTTAAAAGAAAACTAGCCAAACACTTGACCATTTGC
AATGCCAGGGATCAGGAAAGTTCACTGCCCTACATTGTAAAAGGAGTGAA
TTCTGGAGACAATCTTAAGGAAACAGACGAAGATTTGAACAAATTCAATC
AAATAAAACTGCACGAACTGGCGGATGAAGAGTTCTACAGTCTGATCGAC
AAAGTTAAGAATCTGTATGACAAGCACATCAATTCCAGCATACAGGAACT
GCAGCTGGAGCACGAATCCCTAAAGGAGGAACTTAGTCGCAAGGACTACG
GCCAGGAAACGCTACGCCAGCTCACCCAGACCACTAGCTTGCTGGGCATC
CTGGAACACGATCACCAGTTGATGGATCACACGAGCTATATAGAATTCGG
AGCCGGAAAGGGACAATTGGCCTACTTTTTGGCCACCGTATTGCAGGAAC
AGAAGTTGAGTCACTCACAGGTGGTCCTCATCGATCGAATGTCCCTGCGG
CACAAGAAGGACAACAAGTTGGCCAACAGGGAGGTGGTGCAACGTATCCG
TGCTGATATCGCTGATCTTAAGCTTTCTGCTCTGCCGGAGCTAAAGAAAA
CCCAACGAACGGTGGCTTTTTCGAAGCACCTCTGTGGAGCAGCTACAGAC
TTGACCCTGAGATGTATACTCGGTGATGGAAATGCCAGCTCGGACTACGT
TCTCATCGCCCTGTGTTGTCATCATCGCTGCTCCTGGCGCTCCTACGTGG
GACGCAAGTTTCTTCAGGAAGCTGGAATTGGACCACGGGAGTTCGTTATC
CTAACCAAAATGGTCAGTTGGGCAGTTTGTGGCACGGGCTTAAGCCGAGA
GCGGCGTAAGGCCATGGAATCGGCTGACTTTCAGCTCACCGAGACGAACA
CGCAGCGTCTAACTCGCCAGGAGCGCGAACAAATTGGCCAACAGTGCAAG
CGGGTTCTGGATTATGGACGACTGGAGCATCTACGATCCCACGGATATCA
AGCAGAACTTAAGTTCTATGTTCCCAGGGATGTGACTTTGGAAAACGTGG
TTCTGCTGGCCAGACCGACCAGCCCTAAGCTGGACCAAAATAAATGCTGT
TGACCAAAAAAAAAAAAAAAA

RE67941.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG18048-RA 1404 CG18048-RA 1..1404 1..1404 7020 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2171793..2173196 1..1404 7020 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6346116..6347519 1..1404 7020 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6086947..6088350 1..1404 7020 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:52:08 has no hits.

RE67941.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:53:25 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2171793..2173196 1..1405 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:05 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
CG18048-RA 1..1326 78..1403 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:26:16 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
CG18048-RA 1..1326 78..1403 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:11:50 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
CG18048-RA 1..1326 78..1403 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:01:29 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
CG18048-RA 1..1326 78..1403 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:17 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
CG18048-RA 1..1326 78..1403 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:52:49 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
CG18048-RA 1..1403 1..1403 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:26:16 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
CG18048-RA 1..1404 1..1405 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:11:50 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
CG18048-RA 6..1409 1..1404 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:01:30 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
CG18048-RA 1..1403 1..1403 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:17 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
CG18048-RA 6..1409 1..1404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:25 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6346116..6347519 1..1405 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:25 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6346116..6347519 1..1405 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:25 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6346116..6347519 1..1405 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:11:50 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2171838..2173241 1..1405 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:34:40 Download gff for RE67941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6086947..6088350 1..1405 99   Plus

RE67941.pep Sequence

Translation from 77 to 1402

> RE67941.pep
MEPVKETMTTVKAEKPVTTTCSYWVLRKKRRCKMTANKGSEFCGAHASSA
ATTATCDEKAREDSFQERIPCPLDHKHTVFKRKLAKHLTICNARDQESSL
PYIVKGVNSGDNLKETDEDLNKFNQIKLHELADEEFYSLIDKVKNLYDKH
INSSIQELQLEHESLKEELSRKDYGQETLRQLTQTTSLLGILEHDHQLMD
HTSYIEFGAGKGQLAYFLATVLQEQKLSHSQVVLIDRMSLRHKKDNKLAN
REVVQRIRADIADLKLSALPELKKTQRTVAFSKHLCGAATDLTLRCILGD
GNASSDYVLIALCCHHRCSWRSYVGRKFLQEAGIGPREFVILTKMVSWAV
CGTGLSRERRKAMESADFQLTETNTQRLTRQEREQIGQQCKRVLDYGRLE
HLRSHGYQAELKFYVPRDVTLENVVLLARPTSPKLDQNKCC*

RE67941.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16397-PA 441 GF16397-PA 1..432 1..434 1540 66.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13358-PA 435 GG13358-PA 3..434 9..440 2071 88.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14041-PA 435 GH14041-PA 10..434 16..439 1410 64.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18048-PA 441 CG18048-PA 1..441 1..441 2298 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24415-PA 428 GI24415-PA 6..427 12..435 1480 65.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24080-PA 425 GL24080-PA 3..422 4..430 1545 67.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14776-PA 425 GA14776-PA 3..422 4..430 1545 67.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10888-PA 440 GM10888-PA 1..440 1..439 2118 91.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19867-PA 430 GD19867-PA 1..430 1..439 2048 90.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14273-PA 425 GJ14273-PA 1..415 8..429 1486 65.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13057-PA 431 GK13057-PA 1..423 8..434 1494 65 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10212-PA 436 GE10212-PA 3..435 9..440 1986 87.3 Plus

RE67941.hyp Sequence

Translation from 77 to 1402

> RE67941.hyp
MEPVKETMTTVKAEKPVTTTCSYWVLRKKRRCKMTANKGSEFCGAHASSA
ATTATCDEKAREDSFQERIPCPLDHKHTVFKRKLAKHLTICNARDQESSL
PYIVKGVNSGDNLKETDEDLNKFNQIKLHELADEEFYSLIDKVKNLYDKH
INSSIQELQLEHESLKEELSRKDYGQETLRQLTQTTSLLGILEHDHQLMD
HTSYIEFGAGKGQLAYFLATVLQEQKLSHSQVVLIDRMSLRHKKDNKLAN
REVVQRIRADIADLKLSALPELKKTQRTVAFSKHLCGAATDLTLRCILGD
GNASSDYVLIALCCHHRCSWRSYVGRKFLQEAGIGPREFVILTKMVSWAV
CGTGLSRERRKAMESADFQLTETNTQRLTRQEREQIGQQCKRVLDYGRLE
HLRSHGYQAELKFYVPRDVTLENVVLLARPTSPKLDQNKCC*

RE67941.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG18048-PA 441 CG18048-PA 1..441 1..441 2298 100 Plus