BDGP Sequence Production Resources |
Search the DGRC for RE68028
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 680 |
Well: | 28 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Dhod-RA |
Protein status: | RE68028.pep: gold |
Sequenced Size: | 1371 |
Gene | Date | Evidence |
---|---|---|
CG9741 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9741 | 2003-02-13 | Blastp of sequenced clone |
Dhod | 2008-04-29 | Release 5.5 accounting |
Dhod | 2008-08-15 | Release 5.9 accounting |
Dhod | 2008-12-18 | 5.12 accounting |
1371 bp (1371 high quality bases) assembled on 2003-02-13
GenBank Submission: BT009968
> RE68028.complete GTCGTCATGGATCAGGATCACTTAAAGAATGCTAAAAACGCCACGCGGAG AGTTGGTCGTTTGCGGTCGCTGGGAATCGTTACAGTCGGAGGAGCTGCCT TGGTGGCGGGCATTACGGCATACAAGAACCAGGACCAGTTGTTCCGGACC TTCGTGATGCCAGCGGTGCGACTTCTTCCGGCGGAAGCCAGCCATCAACT GGCCGTGCTGGCGTGCAAGTACCGCCTGTGCCCGGTTTCACAGTACCATG ATGACCAGAACTTGCACACGTCGTTCTTTGGCCGGATGCTTAGCAATCCC ATTGGCATTGCAGCGGGATTCGATAAGAACGCGGAGGCGGTGGACGGCCT GCAGGATCTAGGATTCGGATTTATAGAGGTGGGCACAGTTACCCCGGCGG CTCAGGAGGGCAATCCCAAGCCGAGAGTATTCCGGTTGACCGAGGACAAG GCCATCATTAATCGGTACGGATTTAATAGCGACGGGCATCAGGCCGTGCT CCAACGGCTGCGCTTGCTCCGCAAAAAGGAGAACTTCAATGGAGTTGTGG GCGTGAATCTGGGCCGGAACAAGACCACCATGAGCCCGATAGCGGATTAT GTACAGGGTGTTCGGGTTTTCGGGCCCGTAGCAGACTACCTGGTCATTAA TGTGAGCAGTCCGAACACCAAGGGCCTGCGCGATATGCAGAGCAAGGAGA AGCTAAGAGAGCTCCTGGAACAGGTCAACGACACGAAATCCTCCCTGGAT AAGAACAAGAATGTGCCTATACTCTTGAAACTTTCGCCGGATCTATCTTT GGACGACATGAAGGACATCGTGTGGGTAATCAAGCGCAAGAAGAGCCGCG TGGATGGCCTGATCGTTTCAAACACCACGGTGTCGCGGGAAAACATCGAA AAGAACAAGCTGGCCGAGGAAACTGGCGGATTAAGTGGTCCTCCACTCAA GGCCCGCTCCACAGAGATGATCGCCCAGATGTACCAGCTCACCGATGGAA AGATTCCCATCATAGGCGTCGGCGGAGTGGCTTCCGGCTATGATGCATAC GAAAAGATCGAAGCTGGAGCTTCCTACGTCCAAATCTACACGGCTTTAGT GTACGAGGGACCCGCTCTTGTGGAAGACATTAAGGCGGAGCTGTCGGCGC TGATCACACGGCTGGGTCACACTAATGTTGCGGACGTGGTGGGCACCAAC AGCAAGTTCTACTTGCCCAAATGAATCAAAGATGCCACGATTTGAAGCAA GTGCTGCATTCATTTGTGTAAAACTAAGCTGTTAACAAACATTTCTCATG CTTTTCCTTTGGTCTAACCAATAAATCATTAAATTCTTCATTGATTGAAA AAAAAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4477379..4478671 | 55..1347 | 99 | <- | Minus |
chr3R | 4478726..4478779 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhod-RD | 1..1218 | 7..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhod-RD | 1..1218 | 7..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhod-RA | 1..1218 | 7..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhod-RA | 1..1218 | 7..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhod-RA | 1..1218 | 7..1224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhod-RD | 127..1472 | 1..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhod-RD | 127..1472 | 1..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhod-RA | 10..1355 | 1..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhod-RA | 481..1826 | 1..1347 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dhod-RA | 10..1355 | 1..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8651390..8652682 | 55..1347 | 99 | <- | Minus |
3R | 8652737..8652790 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8651390..8652682 | 55..1347 | 99 | <- | Minus |
3R | 8652737..8652790 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8651390..8652682 | 55..1347 | 99 | <- | Minus |
3R | 8652737..8652790 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4477112..4478404 | 55..1347 | 99 | <- | Minus |
arm_3R | 4478459..4478512 | 1..54 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8392221..8393513 | 55..1347 | 99 | <- | Minus |
3R | 8393568..8393621 | 1..54 | 100 | Minus |
Translation from 0 to 1223
> RE68028.hyp VVMDQDHLKNAKNATRRVGRLRSLGIVTVGGAALVAGITAYKNQDQLFRT FVMPAVRLLPAEASHQLAVLACKYRLCPVSQYHDDQNLHTSFFGRMLSNP IGIAAGFDKNAEAVDGLQDLGFGFIEVGTVTPAAQEGNPKPRVFRLTEDK AIINRYGFNSDGHQAVLQRLRLLRKKENFNGVVGVNLGRNKTTMSPIADY VQGVRVFGPVADYLVINVSSPNTKGLRDMQSKEKLRELLEQVNDTKSSLD KNKNVPILLKLSPDLSLDDMKDIVWVIKRKKSRVDGLIVSNTTVSRENIE KNKLAEETGGLSGPPLKARSTEMIAQMYQLTDGKIPIIGVGGVASGYDAY EKIEAGASYVQIYTALVYEGPALVEDIKAELSALITRLGHTNVADVVGTN SKFYLPK*
Translation from 6 to 1223
> RE68028.pep MDQDHLKNAKNATRRVGRLRSLGIVTVGGAALVAGITAYKNQDQLFRTFV MPAVRLLPAEASHQLAVLACKYRLCPVSQYHDDQNLHTSFFGRMLSNPIG IAAGFDKNAEAVDGLQDLGFGFIEVGTVTPAAQEGNPKPRVFRLTEDKAI INRYGFNSDGHQAVLQRLRLLRKKENFNGVVGVNLGRNKTTMSPIADYVQ GVRVFGPVADYLVINVSSPNTKGLRDMQSKEKLRELLEQVNDTKSSLDKN KNVPILLKLSPDLSLDDMKDIVWVIKRKKSRVDGLIVSNTTVSRENIEKN KLAEETGGLSGPPLKARSTEMIAQMYQLTDGKIPIIGVGGVASGYDAYEK IEAGASYVQIYTALVYEGPALVEDIKAELSALITRLGHTNVADVVGTNSK FYLPK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16331-PA | 411 | GF16331-PA | 1..410 | 1..405 | 1788 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16516-PA | 139 | GG16516-PA | 1..137 | 268..404 | 678 | 94.9 | Plus |
Dere\GG17437-PA | 81 | GG17437-PA | 1..46 | 1..46 | 214 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22897-PA | 406 | GH22897-PA | 8..406 | 6..404 | 1509 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dhod-PD | 405 | CG9741-PD | 1..405 | 1..405 | 2053 | 100 | Plus |
Dhod-PA | 405 | CG9741-PA | 1..405 | 1..405 | 2053 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10232-PA | 396 | GI10232-PA | 4..395 | 12..403 | 1470 | 71.2 | Plus |
Dmoj\GI15959-PA | 403 | GI15959-PA | 8..396 | 17..404 | 1236 | 59.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24502-PA | 363 | GL24502-PA | 1..355 | 51..405 | 1560 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22001-PB | 387 | GA22001-PB | 1..387 | 19..405 | 1687 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26331-PA | 405 | GM26331-PA | 1..405 | 1..405 | 2118 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20856-PA | 405 | GD20856-PA | 1..405 | 1..405 | 2096 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11037-PA | 409 | GJ11037-PA | 15..406 | 13..404 | 1488 | 71.4 | Plus |
Dvir\GJ18851-PA | 407 | GJ18851-PA | 8..404 | 6..404 | 1311 | 62.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14072-PA | 397 | GK14072-PA | 5..397 | 13..405 | 1612 | 75.3 | Plus |
Dwil\GK24771-PA | 1045 | GK24771-PA | 553..852 | 82..383 | 163 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24838-PA | 406 | GE24838-PA | 1..404 | 1..404 | 2063 | 96.3 | Plus |