Clone RE68028 Report

Search the DGRC for RE68028

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:680
Well:28
Vector:pFlc-1
Associated Gene/TranscriptDhod-RA
Protein status:RE68028.pep: gold
Sequenced Size:1371

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9741 2003-01-01 Sim4 clustering to Release 3
CG9741 2003-02-13 Blastp of sequenced clone
Dhod 2008-04-29 Release 5.5 accounting
Dhod 2008-08-15 Release 5.9 accounting
Dhod 2008-12-18 5.12 accounting

Clone Sequence Records

RE68028.complete Sequence

1371 bp (1371 high quality bases) assembled on 2003-02-13

GenBank Submission: BT009968

> RE68028.complete
GTCGTCATGGATCAGGATCACTTAAAGAATGCTAAAAACGCCACGCGGAG
AGTTGGTCGTTTGCGGTCGCTGGGAATCGTTACAGTCGGAGGAGCTGCCT
TGGTGGCGGGCATTACGGCATACAAGAACCAGGACCAGTTGTTCCGGACC
TTCGTGATGCCAGCGGTGCGACTTCTTCCGGCGGAAGCCAGCCATCAACT
GGCCGTGCTGGCGTGCAAGTACCGCCTGTGCCCGGTTTCACAGTACCATG
ATGACCAGAACTTGCACACGTCGTTCTTTGGCCGGATGCTTAGCAATCCC
ATTGGCATTGCAGCGGGATTCGATAAGAACGCGGAGGCGGTGGACGGCCT
GCAGGATCTAGGATTCGGATTTATAGAGGTGGGCACAGTTACCCCGGCGG
CTCAGGAGGGCAATCCCAAGCCGAGAGTATTCCGGTTGACCGAGGACAAG
GCCATCATTAATCGGTACGGATTTAATAGCGACGGGCATCAGGCCGTGCT
CCAACGGCTGCGCTTGCTCCGCAAAAAGGAGAACTTCAATGGAGTTGTGG
GCGTGAATCTGGGCCGGAACAAGACCACCATGAGCCCGATAGCGGATTAT
GTACAGGGTGTTCGGGTTTTCGGGCCCGTAGCAGACTACCTGGTCATTAA
TGTGAGCAGTCCGAACACCAAGGGCCTGCGCGATATGCAGAGCAAGGAGA
AGCTAAGAGAGCTCCTGGAACAGGTCAACGACACGAAATCCTCCCTGGAT
AAGAACAAGAATGTGCCTATACTCTTGAAACTTTCGCCGGATCTATCTTT
GGACGACATGAAGGACATCGTGTGGGTAATCAAGCGCAAGAAGAGCCGCG
TGGATGGCCTGATCGTTTCAAACACCACGGTGTCGCGGGAAAACATCGAA
AAGAACAAGCTGGCCGAGGAAACTGGCGGATTAAGTGGTCCTCCACTCAA
GGCCCGCTCCACAGAGATGATCGCCCAGATGTACCAGCTCACCGATGGAA
AGATTCCCATCATAGGCGTCGGCGGAGTGGCTTCCGGCTATGATGCATAC
GAAAAGATCGAAGCTGGAGCTTCCTACGTCCAAATCTACACGGCTTTAGT
GTACGAGGGACCCGCTCTTGTGGAAGACATTAAGGCGGAGCTGTCGGCGC
TGATCACACGGCTGGGTCACACTAATGTTGCGGACGTGGTGGGCACCAAC
AGCAAGTTCTACTTGCCCAAATGAATCAAAGATGCCACGATTTGAAGCAA
GTGCTGCATTCATTTGTGTAAAACTAAGCTGTTAACAAACATTTCTCATG
CTTTTCCTTTGGTCTAACCAATAAATCATTAAATTCTTCATTGATTGAAA
AAAAAAAAAAAAAAAAAAAAA

RE68028.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dhod-RD 1844 Dhod-RD 499..1844 1..1346 6730 100 Plus
Dhod-RA 1844 Dhod-RA 499..1844 1..1346 6730 100 Plus
CG8021-RA 410 CG8021-RA 308..410 1346..1244 515 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4477380..4478671 1346..55 6460 100 Minus
chr3R 27901430 chr3R 4478725..4478779 55..1 275 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8651391..8652682 1346..55 6460 100 Minus
3R 32079331 3R 8652736..8652790 55..1 275 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8392222..8393513 1346..55 6460 100 Minus
3R 31820162 3R 8393567..8393621 55..1 275 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:11:15 has no hits.

RE68028.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:12:24 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4477379..4478671 55..1347 99 <- Minus
chr3R 4478726..4478779 1..54 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:08 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
Dhod-RD 1..1218 7..1224 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:23 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
Dhod-RD 1..1218 7..1224 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:03:58 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
Dhod-RA 1..1218 7..1224 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:42:30 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
Dhod-RA 1..1218 7..1224 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:26 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
Dhod-RA 1..1218 7..1224 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:04:57 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
Dhod-RD 127..1472 1..1346 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:22 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
Dhod-RD 127..1472 1..1346 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:03:58 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
Dhod-RA 10..1355 1..1346 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:42:30 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
Dhod-RA 481..1826 1..1347 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:26 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
Dhod-RA 10..1355 1..1346 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:24 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8651390..8652682 55..1347 99 <- Minus
3R 8652737..8652790 1..54 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:24 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8651390..8652682 55..1347 99 <- Minus
3R 8652737..8652790 1..54 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:24 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8651390..8652682 55..1347 99 <- Minus
3R 8652737..8652790 1..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:03:58 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4477112..4478404 55..1347 99 <- Minus
arm_3R 4478459..4478512 1..54 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:14 Download gff for RE68028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8392221..8393513 55..1347 99 <- Minus
3R 8393568..8393621 1..54 100   Minus

RE68028.hyp Sequence

Translation from 0 to 1223

> RE68028.hyp
VVMDQDHLKNAKNATRRVGRLRSLGIVTVGGAALVAGITAYKNQDQLFRT
FVMPAVRLLPAEASHQLAVLACKYRLCPVSQYHDDQNLHTSFFGRMLSNP
IGIAAGFDKNAEAVDGLQDLGFGFIEVGTVTPAAQEGNPKPRVFRLTEDK
AIINRYGFNSDGHQAVLQRLRLLRKKENFNGVVGVNLGRNKTTMSPIADY
VQGVRVFGPVADYLVINVSSPNTKGLRDMQSKEKLRELLEQVNDTKSSLD
KNKNVPILLKLSPDLSLDDMKDIVWVIKRKKSRVDGLIVSNTTVSRENIE
KNKLAEETGGLSGPPLKARSTEMIAQMYQLTDGKIPIIGVGGVASGYDAY
EKIEAGASYVQIYTALVYEGPALVEDIKAELSALITRLGHTNVADVVGTN
SKFYLPK*

RE68028.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dhod-PD 405 CG9741-PD 1..405 3..407 2053 100 Plus
Dhod-PA 405 CG9741-PA 1..405 3..407 2053 100 Plus

RE68028.pep Sequence

Translation from 6 to 1223

> RE68028.pep
MDQDHLKNAKNATRRVGRLRSLGIVTVGGAALVAGITAYKNQDQLFRTFV
MPAVRLLPAEASHQLAVLACKYRLCPVSQYHDDQNLHTSFFGRMLSNPIG
IAAGFDKNAEAVDGLQDLGFGFIEVGTVTPAAQEGNPKPRVFRLTEDKAI
INRYGFNSDGHQAVLQRLRLLRKKENFNGVVGVNLGRNKTTMSPIADYVQ
GVRVFGPVADYLVINVSSPNTKGLRDMQSKEKLRELLEQVNDTKSSLDKN
KNVPILLKLSPDLSLDDMKDIVWVIKRKKSRVDGLIVSNTTVSRENIEKN
KLAEETGGLSGPPLKARSTEMIAQMYQLTDGKIPIIGVGGVASGYDAYEK
IEAGASYVQIYTALVYEGPALVEDIKAELSALITRLGHTNVADVVGTNSK
FYLPK*

RE68028.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16331-PA 411 GF16331-PA 1..410 1..405 1788 82.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16516-PA 139 GG16516-PA 1..137 268..404 678 94.9 Plus
Dere\GG17437-PA 81 GG17437-PA 1..46 1..46 214 89.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22897-PA 406 GH22897-PA 8..406 6..404 1509 71.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dhod-PD 405 CG9741-PD 1..405 1..405 2053 100 Plus
Dhod-PA 405 CG9741-PA 1..405 1..405 2053 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10232-PA 396 GI10232-PA 4..395 12..403 1470 71.2 Plus
Dmoj\GI15959-PA 403 GI15959-PA 8..396 17..404 1236 59.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24502-PA 363 GL24502-PA 1..355 51..405 1560 81.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22001-PB 387 GA22001-PB 1..387 19..405 1687 80.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26331-PA 405 GM26331-PA 1..405 1..405 2118 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20856-PA 405 GD20856-PA 1..405 1..405 2096 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11037-PA 409 GJ11037-PA 15..406 13..404 1488 71.4 Plus
Dvir\GJ18851-PA 407 GJ18851-PA 8..404 6..404 1311 62.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14072-PA 397 GK14072-PA 5..397 13..405 1612 75.3 Plus
Dwil\GK24771-PA 1045 GK24771-PA 553..852 82..383 163 26.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24838-PA 406 GE24838-PA 1..404 1..404 2063 96.3 Plus