Clone RE68078 Report

Search the DGRC for RE68078

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:680
Well:78
Vector:pFlc-1
Associated Gene/Transcriptfa2h-RB
Protein status:RE68078.pep: gold
Sequenced Size:1410

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30502 2002-11-02 Blastp of sequenced clone
CG30502 2003-01-01 Sim4 clustering to Release 3
CG30502 2008-04-29 Release 5.5 accounting
CG30502 2008-08-15 Release 5.9 accounting
CG30502 2008-12-18 5.12 accounting

Clone Sequence Records

RE68078.complete Sequence

1410 bp (1410 high quality bases) assembled on 2002-11-02

GenBank Submission: BT001715

> RE68078.complete
CGTGAGTTGCGTTGCGTTGCGTGCGGTCAGAGGCTCTGCCGACAGTTGGG
AACCCGGTCTGGAGTCAAGAGCCCAGTGTTTTGATCAGAGCAGTGCGAAT
TCGTTGCCAAATTGATGCCCATCGACATGGATATACCAAAGGAAGCGGAG
TCGAACGACAAGTTCATAGTAAAGTATCGCCAGCAGTATTACGATTTGTC
CAGGTTTATGCACAAGCATCCGGGAGGCATAAACACACTCAAAGGTCTCA
ACAGCGGGGACATGACAGCTCGCTTCCTAAAGGCGCCGCCACATTCGGAT
GCGGCCATGTACTTGATGAGGGAGTACAAAATCGATCCAGAGGACTCTCG
GAAACCAAAGTCGAGCCAAAGGGAAACGTTGCATCACGATGAAGATGGGA
CTTTGCGACAACGGCCCAGGGAAACGGAGGACAAGAACAATAACCAGGTG
GACGATAGTATGGAGCACCTAGTGGACTGGTCTAAGGCAATGCTTCCGCA
GATAGCTAACATAACGGATTGCTACGATGAGTGGGTTCACAAGCCGGTGG
ACAGGCCACTGCGTCTCTTTGACCCTTGGTACTTGGAGATGTGCACCAAG
ACGCCCTGGTGGCTGGTGCCCCTGTTCTGGATACCAGTGATCGTGAAATG
CGCCGTGGAGGAGTTCACCACCGCCTGGCAGGATAGCAACCAGCTGGCTG
TGTTCTCCGGTTACTTTTTATTTGGCGTGCTCCTGTGGTCTTTCCTGGAG
TACACACTGCACCGCTGGGTGTTCCACGTGAAGCTGAGCAACAAGAGCGG
AAGTTGGCTATGCACCTTCCACTTCATGATCCATGGCCTGCACCACAAGG
TGCCCTTCGATCCGATGCGACTGGTGTTTCCGCCCCTTCCCGGCGCAGTG
CTCGCCGCGGTCATCTACACCCCGCTCAGCTTTGTCCTGTCCCATCCGCG
AGTGATCTTGTCTGGAGCTCTGGCCGGCTATCTGTGCTACGATATGATGC
ACTACTACCTGCACTATGGGAACCCTTCGCTATGGGCCTTTGTACACATG
AAGCGCTATCATCACCACCACCACTTCTCGCACCAAACTCTCGGTTACGG
CATCAGCAGTCCCTTGTGGGATGTCGTCTTCAAAACGAGAATCCATCTCC
GCAAGCTGAGATACCAACTGCGCTGGTCCTAGCTGCAATAAATGGCTAAT
ACAGTGCTACTATAGAACAAATTACATTCAGTTTTCAACGCAACAGAGTT
GCTGCCGCAGCAAATAGTTCAATCAAATCGGAAATTTGGTTTTTAGCCTA
TTTGTGTAGGCTGAATACTGAGCATTAGGCTTAAGAATTATTTGTAAGAC
TTTTACCAATTTCTATTAAACAGGAATACACTTCCAATGATACCAAAAAA
AAAAAAAAAA

RE68078.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30502-RB 1427 CG30502-RB 9..1412 1..1404 6990 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3333543..3334246 1394..691 3505 99.9 Minus
chr2R 21145070 chr2R 3336772..3337134 465..103 1815 100 Minus
chr2R 21145070 chr2R 3334308..3334537 693..464 1150 100 Minus
chr2R 21145070 chr2R 3338799..3338901 103..1 515 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7446179..7446892 1404..691 3540 99.7 Minus
2R 25286936 2R 7449418..7449780 465..103 1815 100 Minus
2R 25286936 2R 7446954..7447183 693..464 1150 100 Minus
2R 25286936 2R 7451446..7451548 103..1 515 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7447378..7448091 1404..691 3540 99.7 Minus
2R 25260384 2R 7450617..7450979 465..103 1815 100 Minus
2R 25260384 2R 7448153..7448382 693..464 1150 100 Minus
2R 25260384 2R 7452645..7452747 103..1 515 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:07:59 has no hits.

RE68078.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:08:43 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3338799..3338901 1..103 100   Minus
chr2R 3334308..3334535 466..693 100 <- Minus
chr2R 3333543..3334243 694..1394 99 <- Minus
chr2R 3336772..3337133 104..465 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:13 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
CG30502-RA 1..1089 115..1199 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:06 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
CG30502-RB 1..1068 115..1182 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:18:02 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
fa2h-RB 1..1068 115..1182 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:58:10 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
CG30502-RA 1..1089 115..1199 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:08 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
fa2h-RB 1..1068 115..1182 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:28:21 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
CG30502-RA 4..1401 1..1394 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:06 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
CG30502-RB 4..1397 1..1394 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:18:02 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
fa2h-RB 6..1399 1..1394 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:58:10 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
CG30502-RA 4..1401 1..1394 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:08 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
fa2h-RB 6..1399 1..1394 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:43 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7446189..7446889 694..1394 100 <- Minus
2R 7446954..7447181 466..693 100 <- Minus
2R 7449418..7449779 104..465 100 <- Minus
2R 7451446..7451548 1..103 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:43 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7446189..7446889 694..1394 100 <- Minus
2R 7446954..7447181 466..693 100 <- Minus
2R 7449418..7449779 104..465 100 <- Minus
2R 7451446..7451548 1..103 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:43 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7446189..7446889 694..1394 100 <- Minus
2R 7446954..7447181 466..693 100 <- Minus
2R 7449418..7449779 104..465 100 <- Minus
2R 7451446..7451548 1..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:18:02 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3338951..3339053 1..103 100   Minus
arm_2R 3334459..3334686 466..693 100 <- Minus
arm_2R 3336923..3337284 104..465 100 <- Minus
arm_2R 3333694..3334394 694..1394 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:30:28 Download gff for RE68078.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7447388..7448088 694..1394 100 <- Minus
2R 7448153..7448380 466..693 100 <- Minus
2R 7450617..7450978 104..465 100 <- Minus
2R 7452645..7452747 1..103 100   Minus

RE68078.pep Sequence

Translation from 114 to 1181

> RE68078.pep
MPIDMDIPKEAESNDKFIVKYRQQYYDLSRFMHKHPGGINTLKGLNSGDM
TARFLKAPPHSDAAMYLMREYKIDPEDSRKPKSSQRETLHHDEDGTLRQR
PRETEDKNNNQVDDSMEHLVDWSKAMLPQIANITDCYDEWVHKPVDRPLR
LFDPWYLEMCTKTPWWLVPLFWIPVIVKCAVEEFTTAWQDSNQLAVFSGY
FLFGVLLWSFLEYTLHRWVFHVKLSNKSGSWLCTFHFMIHGLHHKVPFDP
MRLVFPPLPGAVLAAVIYTPLSFVLSHPRVILSGALAGYLCYDMMHYYLH
YGNPSLWAFVHMKRYHHHHHFSHQTLGYGISSPLWDVVFKTRIHLRKLRY
QLRWS*

RE68078.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11951-PA 348 GF11951-PA 5..348 8..355 1534 80.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10749-PA 366 GG10749-PA 12..366 1..355 1757 91.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20733-PA 361 GH20733-PA 8..361 11..355 1262 67.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
fa2h-PB 355 CG30502-PB 1..355 1..355 1982 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20817-PA 354 GI20817-PA 5..354 9..355 1289 67.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11562-PA 230 GL11562-PA 1..230 126..355 1039 81.7 Plus
Dper\GL11561-PA 104 GL11561-PA 1..104 5..121 291 55.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24771-PA 230 GA24771-PA 1..230 126..355 1025 81.3 Plus
Dpse\GA24770-PA 116 GA24770-PA 1..112 5..117 387 64.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20795-PA 356 GM20795-PA 1..356 1..355 1785 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10257-PA 355 GD10257-PA 1..355 1..355 1867 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20550-PA 356 GJ20550-PA 1..356 5..355 1355 69.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22010-PA 377 GK22010-PA 4..377 7..355 1408 69.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24014-PA 355 GE24014-PA 1..355 1..355 1733 89.9 Plus

RE68078.hyp Sequence

Translation from 114 to 1181

> RE68078.hyp
MPIDMDIPKEAESNDKFIVKYRQQYYDLSRFMHKHPGGINTLKGLNSGDM
TARFLKAPPHSDAAMYLMREYKIDPEDSRKPKSSQRETLHHDEDGTLRQR
PRETEDKNNNQVDDSMEHLVDWSKAMLPQIANITDCYDEWVHKPVDRPLR
LFDPWYLEMCTKTPWWLVPLFWIPVIVKCAVEEFTTAWQDSNQLAVFSGY
FLFGVLLWSFLEYTLHRWVFHVKLSNKSGSWLCTFHFMIHGLHHKVPFDP
MRLVFPPLPGAVLAAVIYTPLSFVLSHPRVILSGALAGYLCYDMMHYYLH
YGNPSLWAFVHMKRYHHHHHFSHQTLGYGISSPLWDVVFKTRIHLRKLRY
QLRWS*

RE68078.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
fa2h-PB 355 CG30502-PB 1..355 1..355 1982 100 Plus