BDGP Sequence Production Resources |
Search the DGRC for RE68138
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 681 |
Well: | 38 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3792-RA |
Protein status: | RE68138.pep: gold |
Preliminary Size: | 1180 |
Sequenced Size: | 1185 |
Gene | Date | Evidence |
---|---|---|
CG3792 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3792 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3792 | 2003-02-24 | Blastp of sequenced clone |
CG3792 | 2008-04-29 | Release 5.5 accounting |
CG3792 | 2008-08-15 | Release 5.9 accounting |
CG3792 | 2008-12-18 | 5.12 accounting |
1185 bp (1185 high quality bases) assembled on 2003-02-24
GenBank Submission: BT004850
> RE68138.complete AAATAACATAACGTTGGCACAACCACCTATCTTATCATTCCTCCTCCACT CCCAAGCCGATTCGCCACCGGGCATCAATATCTTCTTCGGCGGAACCCGC ATTACGTGTGCGTAAACGGCGGCTTTCAATTTCATTCTCGGAGCGACCGG CCGGCCAGCTTGATAACACCGGTGCATAGTGAAACCAGCGCCGCTTACTA ATTAAGTACGACCACGACCTCCGAGATAAACAGAAGTCAATTGTTCGCAG CACAAAAATGACGGATCTTATCAGGCAGGGTGCTCTGTTCCTTATGAGCG AGAAGTGCTATGATAACTACTTCCTCTATCACAACTTTTTAGATGTTCCG TGCTTCAAGGCTTTGCTGAGCAAGGGCTTGGGATTGGCAATTATCGCAGG TTCCGTGCTGGTCAAAGTACCACAAGTGCTGAAGATCCTTAACAGCAAGT CTGGCGAGGGCATCAACATTGTGGGCGTAGTGTTGGACTTGCTGGCCATC TCCTTCCACCTGTCGTACAACTTTATGCATGGCTATCCGTTTAGTGCCTG GGGCGACAGTACCTTTCTGGCCATCCAGACCGTCACAATCGCCGTCTTGG TCTTGTTCTTCAACGGGCGCAAGGCGCAGTCGGGACTCTTTCTAGTGGGA TATGTCGTGCTGATGTATGTTCTCAATTCGGGGCTAACGCCCATGTCGGT GCTGTTCACCATCCAGAGCTGCAACATTCCCATCCTGCTGGTGGGCAAGC TGTCTCAGGCGTATACCAACTACCAGGCTGGATCCACTGGTCAGTTGTCA GCCGCCACTGTGATCATGATGTTTGCAGGATCGGTGGCCCGCATCTTCAC CTCCATCCAGGAGACTGGTGACTTTATGATCATCCTCACTTTCATTGCCT CTACCTTTGCCAATTCGGTTATTCTGGGCCAGCTGATCTACTACTGGAAC AAACCCGCTGGCGTCAAGGTGAAGGATTCAAAGGCCAAGAAGCCGAAGAC CAAGAAGGATGACTAAGCAGTGCGGATAGAAGTAACAAAAGTGGAAACAG ATATACATAGAGAGATTTGAACTCGAAACATAGGTTGCAACAACTTCTCG ACAATGTAGAACAAATATGCGATGTTTAAATAATTGAATTGAATAATTAA ATTAAATTGAGTCCTAAATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 933..979 | 1140..1092 | 113 | 75.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4976848..4977670 | 346..1169 | 99 | Plus | |
chr2L | 4976441..4976785 | 1..345 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3792-RA | 1..759 | 258..1016 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3792-RA | 1..759 | 258..1016 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3792-RA | 1..759 | 258..1016 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3792-RA | 1..759 | 258..1016 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3792-RA | 1..759 | 258..1016 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3792-RA | 18..1183 | 1..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3792-RA | 18..1183 | 1..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3792-RA | 30..1194 | 1..1165 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3792-RA | 18..1183 | 1..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3792-RA | 30..1194 | 1..1165 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4977341..4977685 | 1..345 | 100 | -> | Plus |
2L | 4977748..4978570 | 346..1169 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4977341..4977685 | 1..345 | 100 | -> | Plus |
2L | 4977748..4978570 | 346..1169 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4977341..4977685 | 1..345 | 100 | -> | Plus |
2L | 4977748..4978570 | 346..1169 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4977341..4977685 | 1..345 | 100 | -> | Plus |
arm_2L | 4977748..4978570 | 346..1169 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4977341..4977685 | 1..345 | 100 | -> | Plus |
2L | 4977748..4978570 | 346..1169 | 99 | Plus |
Translation from 257 to 1015
> RE68138.pep MTDLIRQGALFLMSEKCYDNYFLYHNFLDVPCFKALLSKGLGLAIIAGSV LVKVPQVLKILNSKSGEGINIVGVVLDLLAISFHLSYNFMHGYPFSAWGD STFLAIQTVTIAVLVLFFNGRKAQSGLFLVGYVVLMYVLNSGLTPMSVLF TIQSCNIPILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSI QETGDFMIILTFIASTFANSVILGQLIYYWNKPAGVKVKDSKAKKPKTKK DD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15707-PA | 253 | GF15707-PA | 1..253 | 1..252 | 1180 | 89.4 | Plus |
Dana\GF25055-PA | 220 | GF25055-PA | 23..220 | 41..251 | 158 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25037-PA | 252 | GG25037-PA | 1..252 | 1..252 | 1262 | 96 | Plus |
Dere\GG15210-PA | 221 | GG15210-PA | 25..217 | 41..232 | 149 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13077-PA | 253 | GH13077-PA | 1..233 | 1..233 | 1008 | 81.1 | Plus |
Dgri\GH15935-PA | 223 | GH15935-PA | 27..223 | 41..251 | 158 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3792-PA | 252 | CG3792-PA | 1..252 | 1..252 | 1272 | 100 | Plus |
CG1265-PB | 221 | CG1265-PB | 25..217 | 41..232 | 175 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21484-PA | 254 | GI21484-PA | 1..239 | 1..239 | 1007 | 79.1 | Plus |
Dmoj\GI16587-PA | 226 | GI16587-PA | 30..219 | 41..228 | 160 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26539-PA | 252 | GL26539-PA | 1..237 | 1..237 | 1035 | 81.9 | Plus |
Dper\GL12841-PA | 221 | GL12841-PA | 25..217 | 41..232 | 163 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17688-PA | 252 | GA17688-PA | 1..235 | 1..235 | 1037 | 83 | Plus |
Dpse\GA11737-PA | 221 | GA11737-PA | 25..217 | 41..232 | 162 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18511-PA | 252 | GM18511-PA | 1..252 | 1..252 | 1293 | 98.8 | Plus |
Dsec\GM14639-PA | 221 | GM14639-PA | 25..217 | 41..232 | 152 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23315-PA | 252 | GD23315-PA | 1..252 | 1..252 | 1291 | 98.8 | Plus |
Dsim\GD13827-PA | 221 | GD13827-PA | 25..217 | 41..232 | 149 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17483-PA | 254 | GJ17483-PA | 1..233 | 1..233 | 1010 | 82.4 | Plus |
Dvir\GJ12839-PA | 226 | GJ12839-PA | 30..222 | 41..232 | 156 | 26 | Plus |
Translation from 257 to 1015
> RE68138.hyp MTDLIRQGALFLMSEKCYDNYFLYHNFLDVPCFKALLSKGLGLAIIAGSV LVKVPQVLKILNSKSGEGINIVGVVLDLLAISFHLSYNFMHGYPFSAWGD STFLAIQTVTIAVLVLFFNGRKAQSGLFLVGYVVLMYVLNSGLTPMSVLF TIQSCNIPILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSI QETGDFMIILTFIASTFANSVILGQLIYYWNKPAGVKVKDSKAKKPKTKK DD*