Clone RE68138 Report

Search the DGRC for RE68138

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:681
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCG3792-RA
Protein status:RE68138.pep: gold
Preliminary Size:1180
Sequenced Size:1185

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3792 2002-01-01 Sim4 clustering to Release 2
CG3792 2003-01-01 Sim4 clustering to Release 3
CG3792 2003-02-24 Blastp of sequenced clone
CG3792 2008-04-29 Release 5.5 accounting
CG3792 2008-08-15 Release 5.9 accounting
CG3792 2008-12-18 5.12 accounting

Clone Sequence Records

RE68138.complete Sequence

1185 bp (1185 high quality bases) assembled on 2003-02-24

GenBank Submission: BT004850

> RE68138.complete
AAATAACATAACGTTGGCACAACCACCTATCTTATCATTCCTCCTCCACT
CCCAAGCCGATTCGCCACCGGGCATCAATATCTTCTTCGGCGGAACCCGC
ATTACGTGTGCGTAAACGGCGGCTTTCAATTTCATTCTCGGAGCGACCGG
CCGGCCAGCTTGATAACACCGGTGCATAGTGAAACCAGCGCCGCTTACTA
ATTAAGTACGACCACGACCTCCGAGATAAACAGAAGTCAATTGTTCGCAG
CACAAAAATGACGGATCTTATCAGGCAGGGTGCTCTGTTCCTTATGAGCG
AGAAGTGCTATGATAACTACTTCCTCTATCACAACTTTTTAGATGTTCCG
TGCTTCAAGGCTTTGCTGAGCAAGGGCTTGGGATTGGCAATTATCGCAGG
TTCCGTGCTGGTCAAAGTACCACAAGTGCTGAAGATCCTTAACAGCAAGT
CTGGCGAGGGCATCAACATTGTGGGCGTAGTGTTGGACTTGCTGGCCATC
TCCTTCCACCTGTCGTACAACTTTATGCATGGCTATCCGTTTAGTGCCTG
GGGCGACAGTACCTTTCTGGCCATCCAGACCGTCACAATCGCCGTCTTGG
TCTTGTTCTTCAACGGGCGCAAGGCGCAGTCGGGACTCTTTCTAGTGGGA
TATGTCGTGCTGATGTATGTTCTCAATTCGGGGCTAACGCCCATGTCGGT
GCTGTTCACCATCCAGAGCTGCAACATTCCCATCCTGCTGGTGGGCAAGC
TGTCTCAGGCGTATACCAACTACCAGGCTGGATCCACTGGTCAGTTGTCA
GCCGCCACTGTGATCATGATGTTTGCAGGATCGGTGGCCCGCATCTTCAC
CTCCATCCAGGAGACTGGTGACTTTATGATCATCCTCACTTTCATTGCCT
CTACCTTTGCCAATTCGGTTATTCTGGGCCAGCTGATCTACTACTGGAAC
AAACCCGCTGGCGTCAAGGTGAAGGATTCAAAGGCCAAGAAGCCGAAGAC
CAAGAAGGATGACTAAGCAGTGCGGATAGAAGTAACAAAAGTGGAAACAG
ATATACATAGAGAGATTTGAACTCGAAACATAGGTTGCAACAACTTCTCG
ACAATGTAGAACAAATATGCGATGTTTAAATAATTGAATTGAATAATTAA
ATTAAATTGAGTCCTAAATAAAAAAAAAAAAAAAA

RE68138.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3792-RA 1305 CG3792-RA 140..1305 1..1166 5800 99.8 Plus
CG8891-RA 856 CG8891-RA 744..856 1166..1054 565 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4976847..4977668 345..1166 4080 99.8 Plus
chr2L 23010047 chr2L 4976441..4976785 1..345 1725 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4977747..4978568 345..1166 4080 99.8 Plus
2L 23513712 2L 4977341..4977685 1..345 1725 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4977747..4978568 345..1166 4080 99.7 Plus
2L 23513712 2L 4977341..4977685 1..345 1725 100 Plus
Blast to na_te.dros performed 2019-03-15 22:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 933..979 1140..1092 113 75.5 Minus

RE68138.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:52:14 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4976848..4977670 346..1169 99   Plus
chr2L 4976441..4976785 1..345 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:15 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 1..759 258..1016 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:11 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 1..759 258..1016 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:34:10 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 1..759 258..1016 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:39:33 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 1..759 258..1016 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:26 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 1..759 258..1016 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:00:25 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 18..1183 1..1166 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:11 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 18..1183 1..1166 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:34:10 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 30..1194 1..1165 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:39:33 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 18..1183 1..1166 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:26 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 30..1194 1..1165 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:14 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4977341..4977685 1..345 100 -> Plus
2L 4977748..4978570 346..1169 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:14 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4977341..4977685 1..345 100 -> Plus
2L 4977748..4978570 346..1169 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:14 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4977341..4977685 1..345 100 -> Plus
2L 4977748..4978570 346..1169 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:34:10 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4977341..4977685 1..345 100 -> Plus
arm_2L 4977748..4978570 346..1169 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:09:56 Download gff for RE68138.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4977341..4977685 1..345 100 -> Plus
2L 4977748..4978570 346..1169 99   Plus

RE68138.pep Sequence

Translation from 257 to 1015

> RE68138.pep
MTDLIRQGALFLMSEKCYDNYFLYHNFLDVPCFKALLSKGLGLAIIAGSV
LVKVPQVLKILNSKSGEGINIVGVVLDLLAISFHLSYNFMHGYPFSAWGD
STFLAIQTVTIAVLVLFFNGRKAQSGLFLVGYVVLMYVLNSGLTPMSVLF
TIQSCNIPILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSI
QETGDFMIILTFIASTFANSVILGQLIYYWNKPAGVKVKDSKAKKPKTKK
DD*

RE68138.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15707-PA 253 GF15707-PA 1..253 1..252 1180 89.4 Plus
Dana\GF25055-PA 220 GF25055-PA 23..220 41..251 158 25.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25037-PA 252 GG25037-PA 1..252 1..252 1262 96 Plus
Dere\GG15210-PA 221 GG15210-PA 25..217 41..232 149 25.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13077-PA 253 GH13077-PA 1..233 1..233 1008 81.1 Plus
Dgri\GH15935-PA 223 GH15935-PA 27..223 41..251 158 25.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3792-PA 252 CG3792-PA 1..252 1..252 1272 100 Plus
CG1265-PB 221 CG1265-PB 25..217 41..232 175 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21484-PA 254 GI21484-PA 1..239 1..239 1007 79.1 Plus
Dmoj\GI16587-PA 226 GI16587-PA 30..219 41..228 160 25.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26539-PA 252 GL26539-PA 1..237 1..237 1035 81.9 Plus
Dper\GL12841-PA 221 GL12841-PA 25..217 41..232 163 25 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17688-PA 252 GA17688-PA 1..235 1..235 1037 83 Plus
Dpse\GA11737-PA 221 GA11737-PA 25..217 41..232 162 24.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18511-PA 252 GM18511-PA 1..252 1..252 1293 98.8 Plus
Dsec\GM14639-PA 221 GM14639-PA 25..217 41..232 152 26.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23315-PA 252 GD23315-PA 1..252 1..252 1291 98.8 Plus
Dsim\GD13827-PA 221 GD13827-PA 25..217 41..232 149 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17483-PA 254 GJ17483-PA 1..233 1..233 1010 82.4 Plus
Dvir\GJ12839-PA 226 GJ12839-PA 30..222 41..232 156 26 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24464-PA 251 GK24464-PA 1..234 1..234 994 79.5 Plus
Dwil\GK10552-PA 227 GK10552-PA 20..218 36..247 157 26.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11282-PA 252 GE11282-PA 1..252 1..252 1293 98.4 Plus
Dyak\GE21429-PA 221 GE21429-PA 25..217 41..232 150 25.5 Plus

RE68138.hyp Sequence

Translation from 257 to 1015

> RE68138.hyp
MTDLIRQGALFLMSEKCYDNYFLYHNFLDVPCFKALLSKGLGLAIIAGSV
LVKVPQVLKILNSKSGEGINIVGVVLDLLAISFHLSYNFMHGYPFSAWGD
STFLAIQTVTIAVLVLFFNGRKAQSGLFLVGYVVLMYVLNSGLTPMSVLF
TIQSCNIPILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSI
QETGDFMIILTFIASTFANSVILGQLIYYWNKPAGVKVKDSKAKKPKTKK
DD*

RE68138.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3792-PA 252 CG3792-PA 1..252 1..252 1272 100 Plus
CG1265-PB 221 CG1265-PB 25..217 41..232 175 24.5 Plus