Clone RE68347 Report

Search the DGRC for RE68347

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:683
Well:47
Vector:pFlc-1
Associated Gene/TranscriptCG14253-RB
Protein status:RE68347.pep: gold
Preliminary Size:1092
Sequenced Size:1898

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14253 2001-12-14 Blastp of sequenced clone
CG14253 2002-01-01 Sim4 clustering to Release 2
CG14253 2003-01-01 Sim4 clustering to Release 3
CG14253 2008-04-29 Release 5.5 accounting
CG14253 2008-08-15 Release 5.9 accounting
CG14253 2008-12-18 5.12 accounting

Clone Sequence Records

RE68347.complete Sequence

1898 bp (1898 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071638

> RE68347.complete
AGTTCTCGTCGAGCGGTCGTGTCGTCTGAACGTCTCCAGTTGTGGCTTTT
CTTTTCCATCGGGTCAGACACACCAAGCTAGTGCCAAGTCCTACCGAACT
GAGCGAATCGAGTCCAATAATGCGCACTCAAGTGCTAAGTTTTTGTTTAG
CAATTTTGCTAATTGTTTGTCTGTTGTAAACGACGAAAAAGACGTATGTA
ATTAGATGCGGCTGCCAAGTGCCGCGGATCAGAGATGGGTAGCCGGCCGC
AGAGGATACGCCGGATTGGTGATAGTCTGCAGATGCTAACCCGGGAAGCC
AGAAGCGAAGTGGTACGCTACGAACATATAGTAATATGTCTCATGGTCAT
GATAGCAGTATTCTCCATACTATGGAACATAACGCTGATCATGATATCGG
GTGATCTGTACGAGGGAATAGTCAGTGCCAAACTTATCTTCCGGGAGCGC
AGCGTTGATAAAATGGATGAGTCCAGCAAGGAGATCCTTCATCGGGATTT
CATCAAAGCCACCCAGTATGCCTATGGAAGGCAGTACTCCGTGCAGGATG
TCACACCTGAATCGCTGAAGAGCGAGAGCCAAATCTTTAAGTTACCGCAT
ATCTACGAATCTATCGAGAATCGACCGAAATTGGAGCGTCTCATTGCTGA
AAATAAAGTGGAGGTTATTTCTACCACGACGACTCCTCCACCGAAGATCA
CTTTCAATGCTGAGGCGGATCGCCACTTTTTGAGCACAATGTCCATCGAT
GTTATGGCCACTGTCTGGGAAAGAGGACCAGGAGCTCAGTTTGTCTACGT
ATTTCCCCTCATATCAGAGATCGTGGCCATTATCTGGACAGCCATGTGTT
TGATTTACCAGACAGGCAGCAAAAAGAGCTCAGTTTTGCCGAAGCCGTGG
CGCATTGTGGTGCCCTCCATCGTTATCTTCTCGGTGATGAGTTTGTGCAG
TGTAATCTACACAATCCTGACCAATGGCCACCTTAAGCACCTCTGTGGCC
AACTGAGGGAGAATCTCACAGATCCCACTGCCATCACCTGCGGCGATGCC
ATCGCCCTGTTGCGTCCCATCATTCACGACCACAACGTATCCCATGATAC
TTATCTGGAGCTCTTCCGCTTCAGCTACTTGATCGGAATGGTACTGTGGA
TAGTGGCTCTGCTGGTCATGGTGCTGCGTTATGTATTCGCCGTGGACTTC
CAGCTGGTGGACATTGATGATATGTTCGATAGCGGACGAAATGGCTCTGC
ACAAGTTCAGATTCAACCGGTATACACTGAGGTAGTGCAGCAGAGCAGTC
CACAGCACCAGACGCAGATGCGTCCGAGATCGGAAGATGACTATCAGAGT
GCCAGGTCGCACTTGAGCGATCTTGCAGTTCCACTTCTGGAGGTGCAAAG
CCAGTCCCAGATTCCGCCAACTAGCTTGGCCTAATCCTGCGGGTAGCCAA
CAGATCAGCAATCTCAGGTTTATTTTTATACGTTGTGTTAGTGTTTAGTA
TATCTAACGACTAAGGAATATTTTATCAACTAACACAATTTAGGTTAAGT
TTTAGGGGACCCTCTAGTCGAGAGTCTTCGATCAATCGATATTTCATTGA
TAGTTTTCACTATCCTAGCTTAGTGAACTCGTGCCTCGATATCAAATATC
TAAAATGTGGTTTAATCAAGGCTATAGAAAATACTACAATACCATTATTG
TTGCATACTCTTGGGCTTATAAGTTCAATCTGAGCTTGAAATATGCCTGG
TTAGGCCACATTGTCCAGTCGATTCCTTTGACTATAACCTCTGGTAACTT
AAATCCATGAGTTTTATTTAAAATGCAACATAAAACCGAAAACAAGTGCG
AATAAAATACAAATATTGTGTATACGAGACAGGAAAAAAAAAAAAAAA

RE68347.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RB 2086 CG14253-RB 110..1995 1..1886 9430 100 Plus
CG14253.a 2119 CG14253.a 467..2028 325..1886 7810 100 Plus
CG14253.c 1630 CG14253.c 70..1630 326..1886 7805 100 Plus
CG14253.c 1630 CG14253.c 1..69 244..312 345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22807769..22808770 882..1883 4785 98.5 Plus
chr3R 27901430 chr3R 22801620..22801944 1..325 1550 98.5 Plus
chr3R 27901430 chr3R 22807027..22807281 326..580 1260 99.6 Plus
chr3R 27901430 chr3R 22807340..22807498 581..739 795 100 Plus
chr3R 27901430 chr3R 22807554..22807700 735..881 720 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26984705..26985709 882..1886 5025 100 Plus
3R 32079331 3R 26978544..26978868 1..325 1625 100 Plus
3R 32079331 3R 26983963..26984217 326..580 1275 100 Plus
3R 32079331 3R 26984276..26984434 581..739 795 100 Plus
3R 32079331 3R 26984490..26984636 735..881 720 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26725536..26726540 882..1886 5025 100 Plus
3R 31820162 3R 26719375..26719699 1..325 1625 100 Plus
3R 31820162 3R 26724794..26725048 326..580 1275 100 Plus
3R 31820162 3R 26725107..26725265 581..739 795 100 Plus
3R 31820162 3R 26725321..26725467 735..881 720 99.3 Plus
Blast to na_te.dros performed on 2019-03-16 23:35:07 has no hits.

RE68347.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:35:45 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22801620..22801944 1..325 98 -> Plus
chr3R 22807027..22807281 326..580 99 -> Plus
chr3R 22807340..22807498 581..739 100 -> Plus
chr3R 22807559..22807700 740..881 100 -> Plus
chr3R 22807769..22808770 882..1883 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:18 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 1..1200 235..1434 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:47 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 1..1200 235..1434 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:21:40 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 1..1200 235..1434 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:01 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 1..1200 235..1434 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:47 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 1..1200 235..1434 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:42:12 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 1..1883 1..1883 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:47 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 1..1883 1..1883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:21:40 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 4..1886 1..1883 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:01 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 1..1883 1..1883 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:47 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 4..1886 1..1883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:45 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26978544..26978868 1..325 100 -> Plus
3R 26983963..26984217 326..580 100 -> Plus
3R 26984276..26984434 581..739 100 -> Plus
3R 26984495..26984636 740..881 100 -> Plus
3R 26984705..26985706 882..1883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:45 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26978544..26978868 1..325 100 -> Plus
3R 26983963..26984217 326..580 100 -> Plus
3R 26984276..26984434 581..739 100 -> Plus
3R 26984495..26984636 740..881 100 -> Plus
3R 26984705..26985706 882..1883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:45 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26978544..26978868 1..325 100 -> Plus
3R 26983963..26984217 326..580 100 -> Plus
3R 26984276..26984434 581..739 100 -> Plus
3R 26984495..26984636 740..881 100 -> Plus
3R 26984705..26985706 882..1883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:21:40 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22804266..22804590 1..325 100 -> Plus
arm_3R 22809685..22809939 326..580 100 -> Plus
arm_3R 22809998..22810156 581..739 100 -> Plus
arm_3R 22810217..22810358 740..881 100 -> Plus
arm_3R 22810427..22811428 882..1883 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:13:22 Download gff for RE68347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26719375..26719699 1..325 100 -> Plus
3R 26724794..26725048 326..580 100 -> Plus
3R 26725107..26725265 581..739 100 -> Plus
3R 26725326..26725467 740..881 100 -> Plus
3R 26725536..26726537 882..1883 100   Plus

RE68347.pep Sequence

Translation from 234 to 1433

> RE68347.pep
MGSRPQRIRRIGDSLQMLTREARSEVVRYEHIVICLMVMIAVFSILWNIT
LIMISGDLYEGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQ
YSVQDVTPESLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTT
PPPKITFNAEADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAII
WTAMCLIYQTGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHL
KHLCGQLRENLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLI
GMVLWIVALLVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEV
VQQSSPQHQTQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLA*

RE68347.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23264-PA 402 GF23264-PA 1..402 1..399 1627 77.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11516-PA 399 GG11516-PA 1..399 1..399 1844 90.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18627-PA 409 GH18627-PA 6..391 1..389 1210 60.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-PB 399 CG14253-PB 1..399 1..399 2031 100 Plus
CG14253-PF 390 CG14253-PF 15..390 24..399 1892 98.4 Plus
CG14253-PA 390 CG14253-PA 15..390 24..399 1892 98.4 Plus
CG14253-PD 390 CG14253-PD 15..390 24..399 1892 98.4 Plus
CG14253-PE 390 CG14253-PE 15..390 24..399 1892 98.4 Plus
CG14253-PC 390 CG14253-PC 15..390 24..399 1892 98.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24298-PA 408 GI24298-PA 6..387 1..390 1288 62.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23892-PA 404 GL23892-PA 1..404 1..399 1644 77 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27090-PA 404 GA27090-PA 1..404 1..399 1652 77.5 Plus
Dpse\GA27090-PB 395 GA27090-PB 15..395 24..399 1528 75.6 Plus
Dpse\GA22497-PA 395 GA22497-PA 15..395 24..399 1528 75.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10356-PA 399 GM10356-PA 1..399 1..399 1964 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21318-PA 399 GD21318-PA 1..399 1..399 1976 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23076-PA 406 GJ23076-PA 2..389 3..389 1191 61 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11380-PA 402 GK11380-PA 9..396 1..386 1217 60.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23704-PA 399 GE23704-PA 1..399 1..399 1985 93.5 Plus

RE68347.hyp Sequence

Translation from 234 to 1433

> RE68347.hyp
MGSRPQRIRRIGDSLQMLTREARSEVVRYEHIVICLMVMIAVFSILWNIT
LIMISGDLYEGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQ
YSVQDVTPESLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTT
PPPKITFNAEADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAII
WTAMCLIYQTGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHL
KHLCGQLRENLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLI
GMVLWIVALLVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEV
VQQSSPQHQTQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLA*

RE68347.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-PB 399 CG14253-PB 1..399 1..399 2031 100 Plus
CG14253-PF 390 CG14253-PF 15..390 24..399 1892 98.4 Plus
CG14253-PA 390 CG14253-PA 15..390 24..399 1892 98.4 Plus
CG14253-PD 390 CG14253-PD 15..390 24..399 1892 98.4 Plus
CG14253-PE 390 CG14253-PE 15..390 24..399 1892 98.4 Plus