Clone RE68357 Report

Search the DGRC for RE68357

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:683
Well:57
Vector:pFlc-1
Associated Gene/TranscriptCG10075-RA
Protein status:RE68357.pep: gold
Preliminary Size:835
Sequenced Size:929

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10075 2001-12-14 Blastp of sequenced clone
CG10075 2002-01-01 Sim4 clustering to Release 2
CG10075 2003-01-01 Sim4 clustering to Release 3
CG10075 2008-04-29 Release 5.5 accounting
CG10075 2008-08-15 Release 5.9 accounting
CG10075 2008-12-18 5.12 accounting

Clone Sequence Records

RE68357.complete Sequence

929 bp (929 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071639

> RE68357.complete
AGCGTTTTAGTCTGTTGTCGCGTGCAATTGGATTTTTTAAACGATTTTGT
TTTAGTAAATTTAGGATACATTTAAGAATGCAGTGCACTCGTGCAGTTGC
AAGACTGGCCGGCGGCCTAGCGAGAACCGCATGGGCAACACAACATACGT
ATAAGCACAGGCCAGCGATACTGGGACTGCTGGAGCAGCCATGCCGCTTG
TGTTCATCCACCGGCGTTGTGGATAATACCAATAAAACGAAACCCGGCAC
AGCGGAAGCCGCAGAAGGCGGTATTCTGAAGAGAGTGCTCAACAAAGTGG
GCTTCACACCGAACACAAAGGCGCGCCTCAAGGTAACCAGTCATCTGCTG
TACGAAAGCGTCGCCGACAAGATCAACTATGTGACCTTTTTCCGCGACTT
CAATCTGCCCAATACCTTTAACTCCTGGTTCTTGGTCACCGAACTGCATG
TTTGGCTACTCCTGATGCGCTCCATGGCCGAGGGCTCCGAAACGGGCGAG
GATGGACGCTTCCTGCGCAACTGCATTGTGGAGGCGATGTGGGGAGATGT
TAACACACGCGCCAAGAAATTGGGAGCTCACAATCCTTCACGCACCCGTC
AGCAAATCGAGACCTTATCCGAGCAGTTCCAAGCGGCCCTAATCGCCTAC
GACGAGGGCATCATGTCCGACGATCGGGTTTTGGCCTGCGCCTTGTGGCG
CCGCTTCTTCGAGATGAACTGTGATGATTACGCGCAGATCGAGCGACTGG
TGAAGTACGTCCGCCAGCAGGCCAGCATGCTGGACAGTTTGCCACGCGAT
CAGTTCATTGTCAAGCCGAAAGTGGCATGGTTGGAATTGGACAAGTGCAA
GGTTTAATCTTAGTTATATTCTGTTTTTTAAAAATAAAGTTTGAGAGTAT
GTGAACTGGAAACTAAAAAAAAAAAAAAA

RE68357.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-RA 983 CG10075-RA 73..983 4..914 4540 99.8 Plus
CG9948.b 1462 CG9948.b 829..1168 915..576 1685 99.7 Minus
CG9948-RA 1503 CG9948-RA 870..1209 915..576 1685 99.7 Minus
CG9948.b 1462 CG9948.b 1235..1462 576..349 1140 100 Minus
CG9948-RA 1503 CG9948-RA 1276..1503 576..349 1140 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6949237..6949575 914..576 1680 99.7 Minus
chr3L 24539361 chr3L 6949642..6949895 576..323 1270 100 Minus
chr3L 24539361 chr3L 6949954..6950143 323..134 950 100 Minus
chr3L 24539361 chr3L 6950255..6950386 135..4 660 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6956945..6957284 915..576 1685 99.7 Minus
3L 28110227 3L 6957351..6957604 576..323 1270 100 Minus
3L 28110227 3L 6957663..6957852 323..134 950 100 Minus
3L 28110227 3L 6957964..6958095 135..4 660 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6950045..6950384 915..576 1685 99.7 Minus
3L 28103327 3L 6950451..6950704 576..323 1270 100 Minus
3L 28103327 3L 6950763..6950952 323..134 950 100 Minus
3L 28103327 3L 6951064..6951195 135..4 660 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:29:12 has no hits.

RE68357.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:30:13 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6949237..6949575 576..914 99 <- Minus
chr3L 6949643..6949894 324..575 100 <- Minus
chr3L 6949954..6950142 135..323 100 <- Minus
chr3L 6950256..6950390 1..134 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:19 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 1..780 78..857 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:49 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 1..780 78..857 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:30:36 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 1..780 78..857 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:04 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 1..780 78..857 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:59:51 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 1..780 78..857 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:42:16 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 1..915 1..914 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:49 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 16..930 1..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:30:36 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 10..924 1..914 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:05 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 1..915 1..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:59:51 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 10..924 1..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:13 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6957965..6958099 1..134 99   Minus
3L 6956946..6957284 576..914 99 <- Minus
3L 6957352..6957603 324..575 100 <- Minus
3L 6957663..6957851 135..323 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:13 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6957965..6958099 1..134 99   Minus
3L 6956946..6957284 576..914 99 <- Minus
3L 6957352..6957603 324..575 100 <- Minus
3L 6957663..6957851 135..323 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:13 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6957965..6958099 1..134 99   Minus
3L 6956946..6957284 576..914 99 <- Minus
3L 6957352..6957603 324..575 100 <- Minus
3L 6957663..6957851 135..323 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:30:36 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6950046..6950384 576..914 99 <- Minus
arm_3L 6950452..6950703 324..575 100 <- Minus
arm_3L 6950763..6950951 135..323 100 <- Minus
arm_3L 6951065..6951199 1..134 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:13:25 Download gff for RE68357.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6950452..6950703 324..575 100 <- Minus
3L 6950046..6950384 576..914 99 <- Minus
3L 6950763..6950951 135..323 100 <- Minus
3L 6951065..6951199 1..134 99   Minus

RE68357.hyp Sequence

Translation from 0 to 856

> RE68357.hyp
SCFSLLSRAIGFFKRFCFSKFRIHLRMQCTRAVARLAGGLARTAWATQHT
YKHRPAILGLLEQPCRLCSSTGVVDNTNKTKPGTAEAAEGGILKRVLNKV
GFTPNTKARLKVTSHLLYESVADKINYVTFFRDFNLPNTFNSWFLVTELH
VWLLLMRSMAEGSETGEDGRFLRNCIVEAMWGDVNTRAKKLGAHNPSRTR
QQIETLSEQFQAALIAYDEGIMSDDRVLACALWRRFFEMNCDDYAQIERL
VKYVRQQASMLDSLPRDQFIVKPKVAWLELDKCKV*

RE68357.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-PA 259 CG10075-PA 1..259 27..285 1361 100 Plus

RE68357.pep Sequence

Translation from 77 to 856

> RE68357.pep
MQCTRAVARLAGGLARTAWATQHTYKHRPAILGLLEQPCRLCSSTGVVDN
TNKTKPGTAEAAEGGILKRVLNKVGFTPNTKARLKVTSHLLYESVADKIN
YVTFFRDFNLPNTFNSWFLVTELHVWLLLMRSMAEGSETGEDGRFLRNCI
VEAMWGDVNTRAKKLGAHNPSRTRQQIETLSEQFQAALIAYDEGIMSDDR
VLACALWRRFFEMNCDDYAQIERLVKYVRQQASMLDSLPRDQFIVKPKVA
WLELDKCKV*

RE68357.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10883-PA 259 GF10883-PA 1..259 1..259 1175 83.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15017-PA 259 GG15017-PA 1..259 1..259 1335 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16104-PA 259 GH16104-PA 1..257 1..259 1069 79.3 Plus
Dgri\GH22579-PA 216 GH22579-PA 1..214 44..259 1010 87.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-PA 259 CG10075-PA 1..259 1..259 1361 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12368-PA 260 GI12368-PA 1..258 1..259 1068 80.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15064-PA 259 GL15064-PA 1..259 1..259 1141 83.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10052-PA 259 GA10052-PA 1..259 1..259 1140 83.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13807-PA 233 GM13807-PA 2..231 30..259 1223 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13104-PA 259 GD13104-PA 1..259 1..259 1376 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12261-PA 261 GJ12261-PA 1..259 1..259 1105 80.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17199-PA 257 GK17199-PA 1..257 1..259 1123 82.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20459-PA 259 GE20459-PA 1..259 1..259 1322 94.6 Plus