Clone RE68367 Report

Search the DGRC for RE68367

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:683
Well:67
Vector:pFlc-1
Associated Gene/TranscriptTwdlG-RA
Protein status:RE68367.pep: gold
Preliminary Size:837
Sequenced Size:1640

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14643 2002-01-01 Sim4 clustering to Release 2
CG14643 2002-11-12 Blastp of sequenced clone
CG14643 2003-01-01 Sim4 clustering to Release 3
TwdlG 2008-04-29 Release 5.5 accounting
TwdlG 2008-08-15 Release 5.9 accounting
TwdlG 2008-12-18 5.12 accounting

Clone Sequence Records

RE68367.complete Sequence

1640 bp (1640 high quality bases) assembled on 2002-11-12

GenBank Submission: AY075518

> RE68367.complete
AAGGGTGATGCCGCAGTATTTGCGTACTCGTAACGGATCGGGGAAGAAAC
GCACGCCACACGATCAAATTGTGCAACTATGTACCAATTACAATTTAATA
ATTGGGTCATCGGAAACCAAAGCAATTTCTGAAATTCATTAAGACATAGT
GAAAAAGCGAAAGTTTTCCAGGTAGACGCCATTTTAAATGAGACTATTGT
GTGATCAATGCAAGTTGCGATTCGAGATTTTGCGTTGCAAAGGTTCGTCA
ATTATGATCGGCCATCAACAGCAACAAATATCCACCATCATGATCACCTC
AAAAGCTAGAGAAATGGATGTGCCAAACTAATCTCCACATTTGTATGTGT
CGATCGCACAAGACTTCCAACTAGACGACGCTTTCGACTTGGCCCTAAGT
TGAAGCTCGAGAGCTTTAGGGTTTTGGGTGAGTTCCCAAAAAGTTACCGT
TACCTCAAGGTTGTATGAAAACGCAAGCGAGTTTTCGTGCGGCTTGAGCG
TTTGTGGTTTCAGTTTCATTTAAACTTTGCGTTGCGGACACAACTTTTTC
GTACCGACATTATCGAGTCAGCGACATAAAAGTCTGGGCGGCTAGTGATT
AGCATTTAGTTGAATTTTGATTGCCAAGGGACCGGTGTCTTCAACTCAAT
CGGAAATGCATTTCTTCATTGTGCCGTGCCTCCTAGGACTTGCAGCCGGC
ATTCCTCAAGGATACAACTACCAAGCCCAGCAACAGCTTCAATCGTCGGC
GCAAGCTGGTCAACTCCATCTGCCTTCTATTCCGCAGTTTGCCACCCTTG
CGGAGCAGACGATCCTTCAGCAGGCACTCCAGGCTCCAAAGTTGCAGCAG
GTCCTGACCGGAGGAGAAGGGCTCGCATCTTACTCAAATCAAAACCAGGC
CTCCGCTTACCAACAGCAGGCGACGCAGTTCGGCCCAAATTCGGCGTACA
ATGCGCTGCCCCAGGCACATCAGCCTCAGCAGCAGCACCTCGTCTCCAAG
GACATCTACGTCCATGTGCCACCAGCAGAAGAGCCCGAGGACCGCTACCC
TCAGCCCGTCCTTCCGCCCGCGCCTCCGCGCAAGCATTATCGCATAGTTT
TCATCAAGGCACCGACGACCAGTGTCTCGAAGGCGGCGTTGCGCATCAAA
CAGGCTCCTGTGGAGGAGAAGACCATCATCTATGTGCTGACCAAGAAGCC
GGACCCACTAGATCTCCAGACTGCCATCGAGGAAATCGCGCCGAAGCAGC
CCAGCAAGCCAGAGGTATTTTTCATCAAATACAAGACCCAGGAGGAAGCT
GCGCATGCGCAACGTACCATTCAAGCTCAATATGACCAGCTTGGCGGAAC
ATCACAGGTTTCTGACGAGGGAGTTGCACCCGTTACATCCGTGATTGGCG
TACTGGACAACCAGCGCAACAACGGAATTTCATCCGGACAGTTTTCTGGC
TCCTTGCCAAACAGCTACTTGCCAACTAATCTGCGTGCTTAGGTACAACT
CCAAGGCCACTGTCGTAATTTTAAGACTTGAACTCTTGTAATTTACACAT
TTAGTTAAATAAAGTTCATATTTTGAGCTCCGCCTTATGATAGAAAGCGA
CTCTGCAGCCATATTCAAATAAAAGAAAAAAAAAAAAAAA

RE68367.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlG-RA 1769 TwdlG-RA 88..1708 1..1621 8075 99.8 Plus
TwdlY-RA 1030 TwdlY-RA 602..644 1246..1288 155 90.6 Plus
TwdlY-RA 1030 TwdlY-RA 521..557 1162..1198 140 91.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 74913..75567 1325..671 3275 100 Minus
chr3R 27901430 chr3R 75627..76237 672..62 3040 99.8 Minus
chr3R 27901430 chr3R 74444..74741 1621..1324 1490 100 Minus
chr3R 27901430 chr3R 76457..76518 62..1 295 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4249191..4249845 1325..671 3275 100 Minus
3R 32079331 3R 4249905..4250515 672..62 3040 99.8 Minus
3R 32079331 3R 4248722..4249019 1621..1324 1490 100 Minus
3R 32079331 3R 4250735..4250796 62..1 295 98.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 3990022..3990676 1325..671 3275 100 Minus
3R 31820162 3R 3990736..3991346 672..62 3040 99.8 Minus
3R 31820162 3R 3989553..3989850 1621..1324 1490 100 Minus
3R 31820162 3R 3991566..3991627 62..1 295 98.3 Minus
X 23527363 X 16751870..16751909 1249..1288 155 92.5 Plus
X 23527363 X 16743650..16743692 1246..1288 155 90.6 Plus
X 23527363 X 16743569..16743605 1162..1198 140 91.8 Plus
Blast to na_te.dros performed 2019-03-16 21:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 2362..2426 296..234 121 69.2 Minus

RE68367.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:22:08 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 74438..74739 1326..1625 99 <- Minus
chr3R 74913..75567 671..1325 100 <- Minus
chr3R 75629..76236 63..670 99 <- Minus
chr3R 76457..76518 1..62 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:20 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..837 656..1492 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:04:51 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..837 656..1492 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:05 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..837 656..1492 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:55:04 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..837 656..1492 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:47 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..837 656..1492 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:24:18 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..1626 1..1624 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:04:51 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..1626 1..1624 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:05 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..1620 1..1620 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:55:05 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..1626 1..1624 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:47 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..1620 1..1620 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:22:08 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4248716..4249017 1326..1625 99 <- Minus
3R 4249191..4249845 671..1325 100 <- Minus
3R 4249907..4250514 63..670 99 <- Minus
3R 4250735..4250796 1..62 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:22:08 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4248716..4249017 1326..1625 99 <- Minus
3R 4249191..4249845 671..1325 100 <- Minus
3R 4249907..4250514 63..670 99 <- Minus
3R 4250735..4250796 1..62 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:22:08 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4248716..4249017 1326..1625 99 <- Minus
3R 4249191..4249845 671..1325 100 <- Minus
3R 4249907..4250514 63..670 99 <- Minus
3R 4250735..4250796 1..62 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:05 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 74438..74739 1326..1625 99 <- Minus
arm_3R 74913..75567 671..1325 100 <- Minus
arm_3R 75629..76236 63..670 99 <- Minus
arm_3R 76457..76518 1..62 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:27:24 Download gff for RE68367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3989547..3989848 1326..1625 99 <- Minus
3R 3990022..3990676 671..1325 100 <- Minus
3R 3990738..3991345 63..670 99 <- Minus
3R 3991566..3991627 1..62 98   Minus

RE68367.pep Sequence

Translation from 655 to 1491

> RE68367.pep
MHFFIVPCLLGLAAGIPQGYNYQAQQQLQSSAQAGQLHLPSIPQFATLAE
QTILQQALQAPKLQQVLTGGEGLASYSNQNQASAYQQQATQFGPNSAYNA
LPQAHQPQQQHLVSKDIYVHVPPAEEPEDRYPQPVLPPAPPRKHYRIVFI
KAPTTSVSKAALRIKQAPVEEKTIIYVLTKKPDPLDLQTAIEEIAPKQPS
KPEVFFIKYKTQEEAAHAQRTIQAQYDQLGGTSQVSDEGVAPVTSVIGVL
DNQRNNGISSGQFSGSLPNSYLPTNLRA*

RE68367.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16822-PA 238 GF16822-PA 70..238 111..278 666 88.2 Plus
Dana\GF22658-PA 345 GF22658-PA 134..289 106..267 363 50 Plus
Dana\GF19934-PA 278 GF19934-PA 70..216 112..255 357 53.7 Plus
Dana\GF22662-PA 385 GF22662-PA 1..307 1..261 349 34.4 Plus
Dana\GF17860-PA 309 GF17860-PA 122..259 112..250 340 51.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11741-PA 269 GG11741-PA 1..269 1..278 1096 84.5 Plus
Dere\GG19072-PA 322 GG19072-PA 119..266 106..258 361 51 Plus
Dere\GG12219-PA 347 GG12219-PA 137..292 108..267 356 49.7 Plus
Dere\GG16788-PA 301 GG16788-PA 117..255 112..251 347 51.8 Plus
Dere\GG19076-PA 427 GG19076-PA 126..331 68..261 341 42.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21845-PA 288 GH21845-PA 1..288 1..278 781 60.9 Plus
Dgri\GH14248-PA 305 GH14248-PA 127..303 112..275 360 43.3 Plus
Dgri\GH19046-PA 379 GH19046-PA 101..239 112..248 352 56 Plus
Dgri\GH19057-PA 287 GH19057-PA 84..220 112..250 330 54 Plus
Dgri\GH11916-PA 242 GH11916-PA 27..241 55..277 323 38.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlG-PC 278 CG14643-PC 1..278 1..278 1428 100 Plus
TwdlG-PB 278 CG14643-PB 1..278 1..278 1428 100 Plus
TwdlG-PA 278 CG14643-PA 1..278 1..278 1428 100 Plus
TwdlF-PA 354 CG14639-PA 4..275 3..246 424 41.2 Plus
TwdlV-PA 251 CG14640-PA 1..250 1..275 387 38.8 Plus
TwdlW-PA 308 CG4060-PA 27..306 19..275 371 35.5 Plus
Twdlalpha-PA 388 CG32574-PA 114..319 68..261 357 43.5 Plus
TwdlX-PA 346 CG32571-PA 93..290 69..258 352 43.5 Plus
TwdlZ-PB 210 CG32569-PB 29..175 107..252 317 46.4 Plus
TwdlY-PA 247 CG32570-PA 77..238 112..275 312 42.1 Plus
TwdlE-PA 197 CG14534-PA 33..160 82..214 280 48.5 Plus
TwdlQ-PA 245 CG14250-PA 41..241 72..276 247 34.4 Plus
TwdlT-PA 286 CG5812-PA 130..232 112..216 245 51.4 Plus
TwdlB-PA 286 CG6478-PA 153..280 143..276 245 42.6 Plus
TwdlM-PA 288 CG5468-PA 1..284 1..276 243 29.3 Plus
TwdlK-PA 247 CG6460-PA 1..241 1..276 242 31.3 Plus
TwdlL-PB 279 CG6447-PB 147..274 143..276 242 41.9 Plus
TwdlL-PA 285 CG6447-PA 153..280 143..276 242 41.9 Plus
TwdlH-PA 241 CG31080-PA 22..236 55..276 236 32.6 Plus
TwdlD-PA 256 CG14243-PA 1..241 1..278 236 28.6 Plus
Tb-PA 283 CG5480-PA 1..218 1..243 235 30.7 Plus
TwdlC-PA 360 CG14254-PA 27..261 17..250 232 34.1 Plus
TwdlJ-PB 274 CG5471-PB 11..215 8..241 229 33.8 Plus
TwdlN-PA 309 CG5476-PA 174..301 143..276 229 41.7 Plus
Twdlbeta-PA 198 CG8986-PA 53..168 92..213 223 41.8 Plus
TwdlO-PA 229 CG6452-PA 87..222 143..276 223 40.6 Plus
TwdlP-PA 220 CG14240-PA 44..184 93..241 221 39.7 Plus
TwdlR-PA 325 CG31081-PA 25..194 74..241 200 32.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21932-PA 273 GI21932-PA 2..272 8..277 790 63.9 Plus
Dmoj\GI10847-PA 372 GI10847-PA 146..288 108..248 335 52.4 Plus
Dmoj\GI23141-PA 328 GI23141-PA 133..271 112..251 333 47.9 Plus
Dmoj\GI10848-PA 268 GI10848-PA 85..265 112..273 332 47 Plus
Dmoj\GI14656-PA 374 GI14656-PA 174..333 117..278 329 44.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12334-PA 296 GL12334-PA 1..295 1..277 919 68.3 Plus
Dper\GL27212-PA 312 GL27212-PA 126..264 112..251 338 47.9 Plus
Dper\GL26862-PA 259 GL26862-PA 107..214 143..251 322 58.7 Plus
Dper\GL26861-PA 223 GL26861-PA 35..173 112..250 293 48.3 Plus
Dper\GL12309-PA 437 GL12309-PA 183..402 2..257 276 40.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13142-PA 296 GA13142-PA 1..295 1..277 918 68 Plus
Dpse\GA16998-PA 344 GA16998-PA 142..310 112..275 366 47.4 Plus
Dpse\GA17925-PA 314 GA17925-PA 127..265 112..251 340 47.9 Plus
Dpse\GA17001-PA 359 GA17001-PA 149..289 109..251 333 50.3 Plus
Dpse\GA16997-PA 254 GA16997-PA 79..253 112..277 315 44.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10719-PA 281 GM10719-PA 1..281 1..278 998 85.4 Plus
Dsec\GM10738-PA 357 GM10738-PA 137..278 108..246 356 53.5 Plus
Dsec\GM13462-PA 346 GM13462-PA 143..290 106..258 351 49 Plus
Dsec\GM15381-PA 306 GM15381-PA 126..304 112..275 340 45.3 Plus
Dsec\GM20554-PA 382 GM20554-PA 1..307 1..261 337 34.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19694-PA 278 GD19694-PA 1..278 1..278 1174 95.3 Plus
Dsim\GD19709-PA 357 GD19709-PA 137..278 108..246 356 53.5 Plus
Dsim\GD17302-PA 346 GD17302-PA 143..290 106..258 355 49.7 Plus
Dsim\GD17305-PA 405 GD17305-PA 114..322 68..261 346 41 Plus
Dsim\GD20247-PA 303 GD20247-PA 128..301 112..275 311 43.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14291-PA 281 GJ14291-PA 1..281 1..278 841 63.6 Plus
Dvir\GJ14455-PA 269 GJ14455-PA 90..223 112..247 353 52.9 Plus
Dvir\GJ19305-PA 387 GJ19305-PA 165..309 112..258 349 48.3 Plus
Dvir\GJ14454-PA 344 GJ14454-PA 118..260 108..248 336 51.7 Plus
Dvir\GJ19308-PA 368 GJ19308-PA 185..326 117..262 334 50.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22650-PA 292 GK22650-PA 1..292 1..278 825 69.3 Plus
Dwil\GK10882-PA 315 GK10882-PA 131..313 112..275 368 44.6 Plus
Dwil\GK25414-PA 339 GK25414-PA 8..276 4..258 354 36.6 Plus
Dwil\GK25415-PA 249 GK25415-PA 83..226 112..257 307 47.6 Plus
Dwil\GK22519-PA 265 GK22519-PA 1..265 1..276 299 37.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25368-PA 265 GE25368-PA 1..265 1..278 953 82.7 Plus
Dyak\GE25399-PA 334 GE25399-PA 3..282 2..257 367 38.5 Plus
Dyak\GE17617-PA 351 GE17617-PA 148..295 106..258 356 49.7 Plus
Dyak\GE24178-PA 269 GE24178-PA 84..222 112..251 351 51.8 Plus
Dyak\GE17621-PA 429 GE17621-PA 133..347 68..261 346 41.3 Plus

RE68367.hyp Sequence

Translation from 655 to 1491

> RE68367.hyp
MHFFIVPCLLGLAAGIPQGYNYQAQQQLQSSAQAGQLHLPSIPQFATLAE
QTILQQALQAPKLQQVLTGGEGLASYSNQNQASAYQQQATQFGPNSAYNA
LPQAHQPQQQHLVSKDIYVHVPPAEEPEDRYPQPVLPPAPPRKHYRIVFI
KAPTTSVSKAALRIKQAPVEEKTIIYVLTKKPDPLDLQTAIEEIAPKQPS
KPEVFFIKYKTQEEAAHAQRTIQAQYDQLGGTSQVSDEGVAPVTSVIGVL
DNQRNNGISSGQFSGSLPNSYLPTNLRA*

RE68367.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlG-PC 278 CG14643-PC 1..278 1..278 1428 100 Plus
TwdlG-PB 278 CG14643-PB 1..278 1..278 1428 100 Plus
TwdlG-PA 278 CG14643-PA 1..278 1..278 1428 100 Plus
TwdlF-PA 354 CG14639-PA 4..275 3..246 424 41.2 Plus
TwdlV-PA 251 CG14640-PA 1..250 1..275 387 38.8 Plus