Clone RE68446 Report

Search the DGRC for RE68446

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:684
Well:46
Vector:pFlc-1
Associated Gene/TranscriptCG31516-RA
Protein status:RE68446.pep: gold
Sequenced Size:1687

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31516 2002-11-02 Blastp of sequenced clone
CG31516 2003-01-01 Sim4 clustering to Release 3
CG31516 2008-04-29 Release 5.5 accounting
CG31516 2008-08-15 Release 5.9 accounting
CG31516 2008-12-18 5.12 accounting

Clone Sequence Records

RE68446.complete Sequence

1687 bp (1687 high quality bases) assembled on 2002-11-02

GenBank Submission: BT001717

> RE68446.complete
AGTTTCAGATGACCGATATGGCCGTAAGTTTGCGCAAACCGAGCTCCGCT
TATTTTGGACATTGAAGTTAAGCTTGCAATTTGCTGTGTGCACCTGGCCA
GTTTCACGTAACGCGTGGAGATTTGTCGAATGCAAAATACACAACCTTAT
CAGTGTACTAATTACCACCGCCCTACTCCCACGTTGTATCGATGCCCCCG
ATCTAGCATTGACACAATTTTCAGGGAGCCGCATTCGGCCAAAGCCGTTT
AATGTAAGACAATAAAAATAAACATTTTCCGCGCCATTTGGTGCGCCTGC
AAAGCGGTCGGGGTCGTGGAAAACCCCTCTGTAGGCAAACAGCGGGAGCA
TTCTGTTTGCACAACTGCAGCCGAGAGCACGCTATAGAAAAAACCCCGAG
ACCCCTGGATCTGGACTTTGAAACTATAGCCACCATGTGCCGGCGACTAA
GAAATATCCCCGGACTGATCTGCCTGCTGACGACGGTCGTCGTGCCCTGT
CGGACGGAGTTCTACGCTCTAGACGCGCTGGGGCGGGATCCGAGTCCCGC
TGATTTTCCGGGTGCAGTGCCACGACTGGTTATCTACAACCCCTTTAGTG
GCCAACAGCTGGAGCCGCTGCGGTACTCGGCTGTTTCGCGGGGCAGACGG
CAGCCCGTGAACGGTAACATCGTAGAGCTACCCCAGCTCTGGCAGCCCTG
CTCCTGCGTCGAGTTCTCTTGCCGGTGCTGCCTTGGCCTGGCTCTGGGAC
TCGGCGAATCAGCCAACCAGCGGTTGTGCGCCGCCCTCGACTACACCCGG
GCGGATCTAGGTCTGCGCCTCAGCGTCGAGATAAACCAGCGCAAGGTGGC
AACCTTCGGGTTCTCGACTCGAAATCCGCCCGAATACTGCGTGCCGCTGC
CGCTCTCCAGCTGCCTCAGACTCTACGACATCCGTGCGTTCGGCGAGGGC
AACATGCAGATATGTCTGTCGGTGGTCTTTAAAGTTCTGGCCAGCCAGTT
CTTCGAGTACCGCTTCAGCTGCCTGCGCTTTGGCGCCAGAGGAGTATTCT
TCGTTCGCGACGCACTGCAGGATCAGGGGCAGGATCAGGAAGCACTGGAG
GTGGGGTCTAGGTCCGATGCGTGGCAGTATACGCCAAAGAAGCTGGCTGA
CAGGAGCATCTTCAGTTTCTACGGCAGATAATATTGGTCTTTCCTCTCAC
GCTTCAAGTTGTCATGTTCCGTGGATGCCTCGCAATGTTACATGTTTAAT
GAAAAAGTGAAATTTACGTTAATTAAAAAGCCTTTAACTCTAAGACCCCG
CCCAGCAGCACAGACGCCATGAATATGGCGAAAATTGGCAGTAAACTGTG
GCCTCCCTTGGTCTGGTACGGGCGATGATGCGACTGCTTGGATCTTATCC
CACTTACGAATGTACCAACGGCTGTAATCGTTCTTCAAACCACTTTTTTT
TAACGATAGCGCACACAGCAATTACTTCTCTGTTTACTTAAGATTCAAAT
ATGTAGTGAGAGGCGCCGGCCCTTGAACCTATTAGGCTGCGAATGATTAT
GAAGTGACCAAGGGTCTCATATTATAAATAATATATTAGTTCCCCCACAT
ATGACTGTTGTTATTTGATGTTATTTGAGTTTTAAAAATATATTAAATGA
AATAAATTTTAGTGCACCACAAAAAAAAAAAAAAAAA

RE68446.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31516-RA 1674 CG31516-RA 1..1669 1..1669 8330 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 44184..45852 1669..1 8330 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4218462..4220130 1669..1 8330 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 3959293..3960961 1669..1 8330 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 04:08:10 has no hits.

RE68446.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:08:48 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 44224..45852 1..1629 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:22 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
CG31516-RA 1..747 435..1181 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:03 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
CG31516-RA 1..747 435..1181 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:18:11 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
CG31516-RA 1..747 435..1181 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:58:00 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
CG31516-RA 1..747 435..1181 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:18 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
CG31516-RA 1..747 435..1181 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:28:17 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
CG31516-RA 1..1669 1..1670 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:03 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
CG31516-RA 1..1669 1..1670 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:18:11 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
CG31516-RA 1..1668 1..1668 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:58:00 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
CG31516-RA 1..1669 1..1670 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:18 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
CG31516-RA 1..1668 1..1668 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:48 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4218461..4220130 1..1670 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:48 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4218461..4220130 1..1670 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:48 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4218461..4220130 1..1670 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:18:11 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 44183..45852 1..1670 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:30:25 Download gff for RE68446.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3959292..3960961 1..1670 99   Minus

RE68446.pep Sequence

Translation from 434 to 1180

> RE68446.pep
MCRRLRNIPGLICLLTTVVVPCRTEFYALDALGRDPSPADFPGAVPRLVI
YNPFSGQQLEPLRYSAVSRGRRQPVNGNIVELPQLWQPCSCVEFSCRCCL
GLALGLGESANQRLCAALDYTRADLGLRLSVEINQRKVATFGFSTRNPPE
YCVPLPLSSCLRLYDIRAFGEGNMQICLSVVFKVLASQFFEYRFSCLRFG
ARGVFFVRDALQDQGQDQEALEVGSRSDAWQYTPKKLADRSIFSFYGR*

RE68446.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17281-PA 265 GF17281-PA 3..233 5..228 677 63.2 Plus
Dana\GF22613-PA 695 GF22613-PA 46..192 66..207 186 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11785-PA 248 GG11785-PA 1..248 1..248 1024 82.3 Plus
Dere\GG18181-PA 769 GG18181-PA 46..237 66..241 214 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24068-PA 437 GH24068-PA 46..192 66..207 215 31.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31516-PA 248 CG31516-PA 1..248 1..248 1315 100 Plus
CG8568-PA 759 CG8568-PA 46..227 66..232 198 27 Plus
CG34038-PC 237 CG34038-PC 80..198 88..207 148 29 Plus
CG34038-PB 271 CG34038-PB 114..232 88..207 148 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24747-PA 190 GI24747-PA 1..181 41..229 292 35.8 Plus
Dmoj\GI14647-PA 585 GI14647-PA 55..241 66..240 210 28.5 Plus
Dmoj\GI10450-PA 153 GI10450-PA 7..152 65..206 151 25 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12340-PA 241 GL12340-PA 10..201 36..216 646 66.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16293-PA 274 GA16293-PA 43..234 36..216 653 66.7 Plus
Dpse\GA21170-PA 637 GA21170-PA 49..195 66..207 194 29.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10724-PA 182 GM10724-PA 1..175 1..175 824 89.7 Plus
Dsec\GM13313-PA 760 GM13313-PA 46..227 66..232 209 27 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19698-PA 244 GD19698-PA 1..244 1..248 1151 90.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14574-PA 218 GJ14574-PA 38..210 49..228 326 38.6 Plus
Dvir\GJ19296-PA 551 GJ19296-PA 48..194 66..207 206 31.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11020-PA 276 GK11020-PA 47..245 46..238 675 63.4 Plus
Dwil\GK19921-PA 564 GK19921-PA 54..200 66..207 188 29.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25371-PA 243 GE25371-PA 1..236 1..236 950 77.5 Plus
Dyak\GE15591-PA 821 GE15591-PA 47..228 66..232 205 26.5 Plus

RE68446.hyp Sequence

Translation from 434 to 1180

> RE68446.hyp
MCRRLRNIPGLICLLTTVVVPCRTEFYALDALGRDPSPADFPGAVPRLVI
YNPFSGQQLEPLRYSAVSRGRRQPVNGNIVELPQLWQPCSCVEFSCRCCL
GLALGLGESANQRLCAALDYTRADLGLRLSVEINQRKVATFGFSTRNPPE
YCVPLPLSSCLRLYDIRAFGEGNMQICLSVVFKVLASQFFEYRFSCLRFG
ARGVFFVRDALQDQGQDQEALEVGSRSDAWQYTPKKLADRSIFSFYGR*

RE68446.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31516-PA 248 CG31516-PA 1..248 1..248 1315 100 Plus
CG8568-PA 759 CG8568-PA 46..227 66..232 198 27 Plus
CG34038-PC 237 CG34038-PC 80..198 88..207 148 29 Plus
CG34038-PB 271 CG34038-PB 114..232 88..207 148 29 Plus