Clone RE68555 Report

Search the DGRC for RE68555

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:685
Well:55
Vector:pFlc-1
Associated Gene/TranscriptCG34137-RA
Protein status:RE68555.pep: gold
Sequenced Size:902

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG34137 2008-04-29 Release 5.5 accounting

Clone Sequence Records

RE68555.complete Sequence

902 bp assembled on 2007-01-24

GenBank Submission: BT030310

> RE68555.complete
ATCAGTTTTTAAAAGACTATCCTACCGACAAGAGCACTTCTTCAATCAGC
ATTCTAAAACATCTGAGCAGTATGTCAGCATTCACCTGCACACAGTACCT
AAACCTCAATTCGAAGGACGTTTCGTCAATGTCCACCACCGTTACATTAA
ACGCAGCCTGCTTTGGGCGGCAGGACTTGAACCTATTTATTGAGAGTCTA
GAAACCATATCTCGCCTGGAAAGGGAGAGACACGAGCGACGCCAGCTTCG
GCGCGAGCAAAGACTACACCAGGCGCGAATTACTGAGTTGGCGGACGAAC
GATGCTCCAGTCCGACACCCACAGCCGAGGAAGCCGTAGACGAGCCGCTC
TTATATCTGGAGGCCAAGTGCATACCGTATGCGGTTTCTGGCCATATTTT
TGCACAGGGCGACAACACACCTTGTCCCGAATACCATATGTGTGACGACG
AAGCGTACGGAAGTGCTTCGTATTCAGCACGCAGCAGCGTCACCTACTGT
AGCTGTGGCGGAATCTCCAATCTGGATTCAGACAGCGGAGAATCCGAAGG
GAAGATGAAACCGTTTGTGCATCCGAGCTCCCAGGCCAAACCAAAGAATA
GGTATTCTTCAACGCGATCCCGCATAATTAACTTGATGTTAAAGAGAAAT
AGGGCTAAGCCCGCTCTCATCGAGCATCTGCAGCGACAGGGACACGGTGA
CACGTTATCCAGCGAGAACATCAGTCACCAGTTCCCACGGCTTACTTCTA
GCCAAAAAAGGTCGGCTGAGCATAGTTTTCTGGATAAGGCCCTTCGATAT
CTTACATTATAATAAGCTTCTTTGTGTAAATATAATGTTTTAGGTTTGTT
TATAAAATATTTCAATACATTAAAGTTAATTGCCACAAAAAAAAAAAAAA
AA

RE68555.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG34137-RA 818 CG34137-RA 7..818 1..812 4060 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22150292..22151177 1..886 4430 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22151755..22152643 1..889 4445 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22151755..22152643 1..889 4445 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:36:37 has no hits.

RE68555.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:37:32 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22150292..22151177 1..886 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:28 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
CG34137-RA 1..741 72..812 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:08:45 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
CG34137-RB 1..741 72..812 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:16 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
CG34137-RA 1..741 72..812 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:19:06 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
CG34137-RA 1..741 72..812 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:45:55 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
CG34137-RA 1..741 72..812 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:37:45 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
CG34137-RA 7..818 1..812 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:08:44 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
CG34137-RB 1..886 1..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:16 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
CG34137-RA 7..892 1..886 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:19:06 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
CG34137-RA 7..818 1..812 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:45:55 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
CG34137-RA 7..892 1..886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:32 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22151755..22152640 1..886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:32 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22151755..22152640 1..886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:32 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22151755..22152640 1..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:16 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22151755..22152640 1..886 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:41:29 Download gff for RE68555.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22151755..22152640 1..886 100   Plus

RE68555.hyp Sequence

Translation from 2 to 811

> RE68555.hyp
QFLKDYPTDKSTSSISILKHLSSMSAFTCTQYLNLNSKDVSSMSTTVTLN
AACFGRQDLNLFIESLETISRLERERHERRQLRREQRLHQARITELADER
CSSPTPTAEEAVDEPLLYLEAKCIPYAVSGHIFAQGDNTPCPEYHMCDDE
AYGSASYSARSSVTYCSCGGISNLDSDSGESEGKMKPFVHPSSQAKPKNR
YSSTRSRIINLMLKRNRAKPALIEHLQRQGHGDTLSSENISHQFPRLTSS
QKRSAEHSFLDKALRYLTL*

RE68555.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG34137-PB 246 CG34137-PB 1..246 24..269 1277 100 Plus
CG34137-PA 246 CG34137-PA 1..246 24..269 1277 100 Plus

RE68555.pep Sequence

Translation from 2 to 811

> RE68555.pep
QFLKDYPTDKSTSSISILKHLSSMSAFTCTQYLNLNSKDVSSMSTTVTLN
AACFGRQDLNLFIESLETISRLERERHERRQLRREQRLHQARITELADER
CSSPTPTAEEAVDEPLLYLEAKCIPYAVSGHIFAQGDNTPCPEYHMCDDE
AYGSASYSARSSVTYCSCGGISNLDSDSGESEGKMKPFVHPSSQAKPKNR
YSSTRSRIINLMLKRNRAKPALIEHLQRQGHGDTLSSENISHQFPRLTSS
QKRSAEHSFLDKALRYLTL*

RE68555.pep Blast Records

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10755-PA 248 GH10755-PA 1..248 24..269 549 55.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
dunk-PB 246 CG34137-PB 1..246 24..269 1277 100 Plus
dunk-PA 246 CG34137-PA 1..246 24..269 1277 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11628-PA 257 GI11628-PA 1..257 24..269 597 55.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28026-PA 259 GA28026-PA 3..259 25..269 547 55 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16160-PA 246 GM16160-PA 1..246 24..269 1149 93.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12947-PA 1715 GJ12947-PA 1466..1715 32..269 527 55.5 Plus