Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE68555.complete Sequence
902 bp assembled on 2007-01-24
GenBank Submission: BT030310
> RE68555.complete
ATCAGTTTTTAAAAGACTATCCTACCGACAAGAGCACTTCTTCAATCAGC
ATTCTAAAACATCTGAGCAGTATGTCAGCATTCACCTGCACACAGTACCT
AAACCTCAATTCGAAGGACGTTTCGTCAATGTCCACCACCGTTACATTAA
ACGCAGCCTGCTTTGGGCGGCAGGACTTGAACCTATTTATTGAGAGTCTA
GAAACCATATCTCGCCTGGAAAGGGAGAGACACGAGCGACGCCAGCTTCG
GCGCGAGCAAAGACTACACCAGGCGCGAATTACTGAGTTGGCGGACGAAC
GATGCTCCAGTCCGACACCCACAGCCGAGGAAGCCGTAGACGAGCCGCTC
TTATATCTGGAGGCCAAGTGCATACCGTATGCGGTTTCTGGCCATATTTT
TGCACAGGGCGACAACACACCTTGTCCCGAATACCATATGTGTGACGACG
AAGCGTACGGAAGTGCTTCGTATTCAGCACGCAGCAGCGTCACCTACTGT
AGCTGTGGCGGAATCTCCAATCTGGATTCAGACAGCGGAGAATCCGAAGG
GAAGATGAAACCGTTTGTGCATCCGAGCTCCCAGGCCAAACCAAAGAATA
GGTATTCTTCAACGCGATCCCGCATAATTAACTTGATGTTAAAGAGAAAT
AGGGCTAAGCCCGCTCTCATCGAGCATCTGCAGCGACAGGGACACGGTGA
CACGTTATCCAGCGAGAACATCAGTCACCAGTTCCCACGGCTTACTTCTA
GCCAAAAAAGGTCGGCTGAGCATAGTTTTCTGGATAAGGCCCTTCGATAT
CTTACATTATAATAAGCTTCTTTGTGTAAATATAATGTTTTAGGTTTGTT
TATAAAATATTTCAATACATTAAAGTTAATTGCCACAAAAAAAAAAAAAA
AA
RE68555.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34137-RA | 818 | CG34137-RA | 7..818 | 1..812 | 4060 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 22150292..22151177 | 1..886 | 4430 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22151755..22152643 | 1..889 | 4445 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22151755..22152643 | 1..889 | 4445 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 04:36:37 has no hits.
RE68555.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:37:32 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 22150292..22151177 | 1..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:28 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34137-RA | 1..741 | 72..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:08:45 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34137-RB | 1..741 | 72..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:16 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34137-RA | 1..741 | 72..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:19:06 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34137-RA | 1..741 | 72..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:45:55 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34137-RA | 1..741 | 72..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:37:45 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34137-RA | 7..818 | 1..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:08:44 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34137-RB | 1..886 | 1..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:16 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34137-RA | 7..892 | 1..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:19:06 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34137-RA | 7..818 | 1..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:45:55 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34137-RA | 7..892 | 1..886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:32 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22151755..22152640 | 1..886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:32 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22151755..22152640 | 1..886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:32 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22151755..22152640 | 1..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:16 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22151755..22152640 | 1..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:41:29 Download gff for
RE68555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22151755..22152640 | 1..886 | 100 | | Plus |
RE68555.hyp Sequence
Translation from 2 to 811
> RE68555.hyp
QFLKDYPTDKSTSSISILKHLSSMSAFTCTQYLNLNSKDVSSMSTTVTLN
AACFGRQDLNLFIESLETISRLERERHERRQLRREQRLHQARITELADER
CSSPTPTAEEAVDEPLLYLEAKCIPYAVSGHIFAQGDNTPCPEYHMCDDE
AYGSASYSARSSVTYCSCGGISNLDSDSGESEGKMKPFVHPSSQAKPKNR
YSSTRSRIINLMLKRNRAKPALIEHLQRQGHGDTLSSENISHQFPRLTSS
QKRSAEHSFLDKALRYLTL*
RE68555.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34137-PB | 246 | CG34137-PB | 1..246 | 24..269 | 1277 | 100 | Plus |
CG34137-PA | 246 | CG34137-PA | 1..246 | 24..269 | 1277 | 100 | Plus |
RE68555.pep Sequence
Translation from 2 to 811
> RE68555.pep
QFLKDYPTDKSTSSISILKHLSSMSAFTCTQYLNLNSKDVSSMSTTVTLN
AACFGRQDLNLFIESLETISRLERERHERRQLRREQRLHQARITELADER
CSSPTPTAEEAVDEPLLYLEAKCIPYAVSGHIFAQGDNTPCPEYHMCDDE
AYGSASYSARSSVTYCSCGGISNLDSDSGESEGKMKPFVHPSSQAKPKNR
YSSTRSRIINLMLKRNRAKPALIEHLQRQGHGDTLSSENISHQFPRLTSS
QKRSAEHSFLDKALRYLTL*
RE68555.pep Blast Records
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH10755-PA | 248 | GH10755-PA | 1..248 | 24..269 | 549 | 55.7 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dunk-PB | 246 | CG34137-PB | 1..246 | 24..269 | 1277 | 100 | Plus |
dunk-PA | 246 | CG34137-PA | 1..246 | 24..269 | 1277 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI11628-PA | 257 | GI11628-PA | 1..257 | 24..269 | 597 | 55.6 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA28026-PA | 259 | GA28026-PA | 3..259 | 25..269 | 547 | 55 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM16160-PA | 246 | GM16160-PA | 1..246 | 24..269 | 1149 | 93.1 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ12947-PA | 1715 | GJ12947-PA | 1466..1715 | 32..269 | 527 | 55.5 | Plus |