BDGP Sequence Production Resources |
Search the DGRC for RE68566
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 685 |
Well: | 66 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13893-RA |
Protein status: | RE68566.pep: gold |
Preliminary Size: | 1158 |
Sequenced Size: | 2206 |
Gene | Date | Evidence |
---|---|---|
CG13893 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13893 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13893 | 2003-07-07 | Blastp of sequenced clone |
CG13893 | 2008-04-29 | Release 5.5 accounting |
CG13893 | 2008-08-15 | Release 5.9 accounting |
CG13893 | 2008-12-18 | 5.12 accounting |
2206 bp (2206 high quality bases) assembled on 2003-07-07
GenBank Submission: AY071641
> RE68566.complete AGTAGCTCGCCACCCTCGGAACGGAACGGTTCGGAAACTCGCGAAAAGCG GCAAAGATATACTATACCTCACCTCGTCGCTTTATCACTAACAAAAGCAA AACATTCTGGACGCGAACACAGCTGTGAATACGGATTTCAGTTAGTTTAT TTAACCATTTGCGTGCGACACTCGCCTTGGGCCAAGTTTGAAGTATTTTC CAAGCTGGCATTATTGTAATTAGCCTGTCCGTAGAGACTACGAATCGAGA CAAACAATAATAAAACGCAGAATAATTGCGCTGGAAATAATGTGCGCGGC TAAAAGCGTTAACGTAACGGCTAAATAATAGTAGAAAGTTTTTATTGTTA TCTCTTCTTCTGAGCCGCAGCTGCCAAAAACCGAACAACCATAGCAAGAG CTTTTAAAATTTTGCGTGTGAACAGAAAAGAAATCCGCATTCGGCCGCAT ATCATCGACTTCATGTGATTGTGTGTGCCCGGCTTACCAAAATTGGCAAC GTTCAGACGCCGCTCGGTCAATATTTCGGCCAAATATCTAAGATACGCCA TAGTCAAAATACAAGCAAACCAAAAACATGTCAGGTCCACTGCCCGAAAT CAGCGAAGAACAGCGCGCCATATTGGAGAAGTTTCGCAAGCAAATGGATG ATGCGTTGGTTGGAACCCACGACGATTACTTCTTGGTGCGCTGGCTAAGA GCTCGAAAATGGAATCTGGAGGCAGCGGAGAAAATGCTGAGAGCTAGTTT GAAAACACGCGCCATGTGGAATGTGGACAACATCGAGAAGTGGGATCCAC CGAAGGCATTGCAGGAGTATCTGCCATACGGCCTCATGGGCTACGACAAC GAAGGATCACCGGTGCTGGTCTGCCCCTTTGCCAACTTCGACATGTGGGG CATGATGCACTGCGTCACGCGGTTTGAGTTCCAAAAGTACCTGGTCCTGC TGCTCGAGCGCTTCATGAAGATCGCCTACGATCAGAGTCAAAAGCACGGA TGGCGAGCCCGCCAGCTGGTTGTATTTTTCGACATGCAGGATGTGAACCT GAAGCAGTACGCCTGGCGACCGGCTGCCGAATGTGTGATCTCTACGGTGA AGCAATACGAGGCCAACTTCCCGGAGCTCCTCAAGATGTGCTACATCATC AACGCACCCAAGCTCTTCTCGGTGGCGTTCAACATTGTTAAGAAATTCCT GGACGAGAACACCACCAGCAAGATCGTGATCTACAAATCCGGAGTGGACC GCTGGCAGGAGCAACTCTTCTCCCATGTGAACCGAAAGGCATTTCCGAAG GCCTGGGGCGGCGAGATGGTGGACAGGAACGGAGATCCCCAGTGCAAGGC ACTGATGGTCTGGGGAGGCAAGCTGCCGGAGGAGCTTTACATTGATCAGA GTAGCCAGCAGAGCGATCGAGACTTTGTGGAGGCCCAGGTTCCCAAGGGC GACAAGTTGAAGCTGCACTTTAAGGTCAACGTTGAGGAGCAGAAGATCCT CTCCTGGGAGTTCCGCACCTTTGACTACGACATCAAATTCGGCATCTACA GCGTGGACGACAAGACGGGCGAGAAGCGCAGCGAGGTGCCCCTGGGAACC GTGTACTCCAACGAGATGGACGAGATTGGTTACATCTCTACACGACCGAA CACCACTTACACGGTGGTTTTCGACAACTCCGCCAGCTACCTGCGCAGCA AGAAGCTCCGCTACTGGGTGGACCTCATCTCTGAGGAGGAGGAGGGCATA TCCGAGCTGACCACCCAGATGGACAACACTCAGATTGCGAATCAGCAGTG AACGGGAGCTATTCACCGCGCGACCAGCAACCAAGCCAAAAACCGACGGG AGTAGATAGATTATTAGGTAGACGACAACACAAACTAACCTCGGTGCAAT AGTCACAAAGCATTTTGCCAGATCTCCGCTGCCATCTGCTCCTTCGGAGT CCGCATGGCAGCATCTCTGGCGCATCTGCAATCGAACTATGTGATAGAAA CAAATTAGCAAAAGGAACACAGAAGTATGACTCACACCTACATTTATAGA TAATCGATAATCTTTTTATTACATAGCCGCACTAGCCGCACTGTTTAGTT AACAATTTATAATCTTGGATGTGTAATTTGTTTTCATGCCCAATATTTCA GGGAGTACAGCGCAATAAAATGTATATAGCATCTGATCCCCAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13893-RA | 2230 | CG13893-RA | 1..2194 | 1..2194 | 10970 | 100 | Plus |
CG13893.a | 1574 | CG13893.a | 44..1538 | 700..2194 | 7475 | 100 | Plus |
CG12030.c | 1855 | CG12030.c | 1..462 | 1324..863 | 2310 | 100 | Minus |
CG12030.c | 1855 | CG12030.c | 526..643 | 863..746 | 590 | 100 | Minus |
CG12030.c | 1855 | CG12030.c | 765..836 | 701..630 | 360 | 100 | Minus |
CG12030.c | 1855 | CG12030.c | 649..694 | 745..700 | 230 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 599517..600312 | 1658..863 | 3980 | 100 | Minus |
chr3L | 24539361 | chr3L | 603209..603837 | 631..1 | 2955 | 98.3 | Minus |
chr3L | 24539361 | chr3L | 598923..599455 | 2191..1659 | 2665 | 100 | Minus |
chr3L | 24539361 | chr3L | 600376..600493 | 863..746 | 590 | 100 | Minus |
chr3L | 24539361 | chr3L | 600672..600743 | 701..630 | 345 | 98.6 | Minus |
chr3L | 24539361 | chr3L | 600557..600602 | 745..700 | 230 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 599688..600483 | 1658..863 | 3980 | 100 | Minus |
3L | 28110227 | 3L | 603371..604001 | 631..1 | 3155 | 100 | Minus |
3L | 28110227 | 3L | 599091..599626 | 2194..1659 | 2680 | 100 | Minus |
3L | 28110227 | 3L | 600547..600664 | 863..746 | 590 | 100 | Minus |
3L | 28110227 | 3L | 600843..600914 | 701..630 | 360 | 100 | Minus |
3L | 28110227 | 3L | 600727..600772 | 745..700 | 230 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 599688..600483 | 1658..863 | 3980 | 100 | Minus |
3L | 28103327 | 3L | 603371..604001 | 631..1 | 3155 | 100 | Minus |
3L | 28103327 | 3L | 599091..599626 | 2194..1659 | 2680 | 100 | Minus |
3L | 28103327 | 3L | 600547..600664 | 863..746 | 590 | 100 | Minus |
3L | 28103327 | 3L | 600843..600914 | 701..630 | 360 | 100 | Minus |
3L | 28103327 | 3L | 600727..600772 | 745..700 | 230 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 598923..599455 | 1659..2191 | 100 | <- | Minus |
chr3L | 599517..600311 | 864..1658 | 100 | <- | Minus |
chr3L | 600376..600493 | 746..863 | 100 | <- | Minus |
chr3L | 600557..600600 | 702..745 | 100 | <- | Minus |
chr3L | 600672..600741 | 632..701 | 98 | <- | Minus |
chr3L | 603209..603837 | 1..631 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13893-RA | 1..1224 | 578..1801 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13893-RA | 1..1224 | 578..1801 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13893-RA | 1..1224 | 578..1801 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13893-RA | 1..1224 | 578..1801 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13893-RA | 1..1224 | 578..1801 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13893-RA | 1..2191 | 1..2191 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13893-RA | 1..2191 | 1..2191 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13893-RA | 8..2198 | 1..2191 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13893-RA | 1..2191 | 1..2191 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13893-RA | 8..2198 | 1..2191 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 599094..599626 | 1659..2191 | 100 | <- | Minus |
3L | 599688..600482 | 864..1658 | 100 | <- | Minus |
3L | 600547..600664 | 746..863 | 100 | <- | Minus |
3L | 600727..600770 | 702..745 | 100 | <- | Minus |
3L | 600843..600912 | 632..701 | 100 | <- | Minus |
3L | 603371..604001 | 1..631 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 599094..599626 | 1659..2191 | 100 | <- | Minus |
3L | 599688..600482 | 864..1658 | 100 | <- | Minus |
3L | 600547..600664 | 746..863 | 100 | <- | Minus |
3L | 600727..600770 | 702..745 | 100 | <- | Minus |
3L | 600843..600912 | 632..701 | 100 | <- | Minus |
3L | 603371..604001 | 1..631 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 599094..599626 | 1659..2191 | 100 | <- | Minus |
3L | 599688..600482 | 864..1658 | 100 | <- | Minus |
3L | 600547..600664 | 746..863 | 100 | <- | Minus |
3L | 600727..600770 | 702..745 | 100 | <- | Minus |
3L | 600843..600912 | 632..701 | 100 | <- | Minus |
3L | 603371..604001 | 1..631 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 599094..599626 | 1659..2191 | 100 | <- | Minus |
arm_3L | 599688..600482 | 864..1658 | 100 | <- | Minus |
arm_3L | 600547..600664 | 746..863 | 100 | <- | Minus |
arm_3L | 600727..600770 | 702..745 | 100 | <- | Minus |
arm_3L | 600843..600912 | 632..701 | 100 | <- | Minus |
arm_3L | 603371..604001 | 1..631 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 599094..599626 | 1659..2191 | 100 | <- | Minus |
3L | 599688..600482 | 864..1658 | 100 | <- | Minus |
3L | 600547..600664 | 746..863 | 100 | <- | Minus |
3L | 600727..600770 | 702..745 | 100 | <- | Minus |
3L | 600843..600912 | 632..701 | 100 | <- | Minus |
3L | 603371..604001 | 1..631 | 100 | Minus |
Translation from 577 to 1800
> RE68566.hyp MSGPLPEISEEQRAILEKFRKQMDDALVGTHDDYFLVRWLRARKWNLEAA EKMLRASLKTRAMWNVDNIEKWDPPKALQEYLPYGLMGYDNEGSPVLVCP FANFDMWGMMHCVTRFEFQKYLVLLLERFMKIAYDQSQKHGWRARQLVVF FDMQDVNLKQYAWRPAAECVISTVKQYEANFPELLKMCYIINAPKLFSVA FNIVKKFLDENTTSKIVIYKSGVDRWQEQLFSHVNRKAFPKAWGGEMVDR NGDPQCKALMVWGGKLPEELYIDQSSQQSDRDFVEAQVPKGDKLKLHFKV NVEEQKILSWEFRTFDYDIKFGIYSVDDKTGEKRSEVPLGTVYSNEMDEI GYISTRPNTTYTVVFDNSASYLRSKKLRYWVDLISEEEEGISELTTQMDN TQIANQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13893-PA | 407 | CG13893-PA | 1..407 | 1..407 | 2167 | 100 | Plus |
retm-PC | 659 | CG9528-PC | 214..589 | 5..357 | 276 | 22.2 | Plus |
retm-PA | 659 | CG9528-PA | 214..589 | 5..357 | 276 | 22.2 | Plus |
retm-PB | 707 | CG9528-PB | 214..589 | 5..357 | 276 | 22.2 | Plus |
Translation from 577 to 1800
> RE68566.pep MSGPLPEISEEQRAILEKFRKQMDDALVGTHDDYFLVRWLRARKWNLEAA EKMLRASLKTRAMWNVDNIEKWDPPKALQEYLPYGLMGYDNEGSPVLVCP FANFDMWGMMHCVTRFEFQKYLVLLLERFMKIAYDQSQKHGWRARQLVVF FDMQDVNLKQYAWRPAAECVISTVKQYEANFPELLKMCYIINAPKLFSVA FNIVKKFLDENTTSKIVIYKSGVDRWQEQLFSHVNRKAFPKAWGGEMVDR NGDPQCKALMVWGGKLPEELYIDQSSQQSDRDFVEAQVPKGDKLKLHFKV NVEEQKILSWEFRTFDYDIKFGIYSVDDKTGEKRSEVPLGTVYSNEMDEI GYISTRPNTTYTVVFDNSASYLRSKKLRYWVDLISEEEEGISELTTQMDN TQIANQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25037-PA | 407 | GF25037-PA | 1..407 | 1..407 | 1975 | 90.4 | Plus |
Dana\GF15388-PA | 658 | GF15388-PA | 214..565 | 5..333 | 282 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14655-PA | 407 | GG14655-PA | 1..407 | 1..407 | 2197 | 100 | Plus |
Dere\GG23623-PA | 659 | GG23623-PA | 214..565 | 5..333 | 283 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15210-PA | 408 | GH15210-PA | 1..408 | 1..407 | 1788 | 77.7 | Plus |
Dgri\GH10983-PA | 657 | GH10983-PA | 210..478 | 5..280 | 271 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13893-PA | 407 | CG13893-PA | 1..407 | 1..407 | 2167 | 100 | Plus |
retm-PC | 659 | CG9528-PC | 214..589 | 5..357 | 276 | 22.2 | Plus |
retm-PA | 659 | CG9528-PA | 214..589 | 5..357 | 276 | 22.2 | Plus |
retm-PB | 707 | CG9528-PB | 214..589 | 5..357 | 276 | 22.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16730-PA | 407 | GI16730-PA | 1..406 | 1..405 | 1850 | 82.8 | Plus |
Dmoj\GI17495-PA | 657 | GI17495-PA | 210..564 | 5..334 | 279 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22595-PA | 398 | GL22595-PA | 1..398 | 1..407 | 1951 | 87.5 | Plus |
Dper\GL26257-PA | 665 | GL26257-PA | 212..486 | 5..286 | 272 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12607-PA | 407 | GA12607-PA | 1..407 | 1..407 | 2005 | 88.9 | Plus |
Dpse\GA21858-PA | 669 | GA21858-PA | 212..482 | 5..282 | 273 | 23.8 | Plus |
Dpse\GA24753-PA | 74 | GA24753-PA | 1..61 | 23..92 | 189 | 57.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14271-PA | 407 | GM14271-PA | 1..407 | 1..407 | 2180 | 99.3 | Plus |
Dsec\GM17940-PA | 659 | GM17940-PA | 214..565 | 5..333 | 277 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13526-PA | 407 | GD13526-PA | 1..407 | 1..407 | 2191 | 99.5 | Plus |
Dsim\GD22577-PA | 659 | GD22577-PA | 214..565 | 5..333 | 276 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12473-PA | 407 | GJ12473-PA | 1..407 | 1..406 | 1855 | 83 | Plus |
Dvir\GJ15159-PA | 657 | GJ15159-PA | 210..563 | 5..333 | 276 | 22.3 | Plus |