Clone RE68566 Report

Search the DGRC for RE68566

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:685
Well:66
Vector:pFlc-1
Associated Gene/TranscriptCG13893-RA
Protein status:RE68566.pep: gold
Preliminary Size:1158
Sequenced Size:2206

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13893 2002-01-01 Sim4 clustering to Release 2
CG13893 2003-01-01 Sim4 clustering to Release 3
CG13893 2003-07-07 Blastp of sequenced clone
CG13893 2008-04-29 Release 5.5 accounting
CG13893 2008-08-15 Release 5.9 accounting
CG13893 2008-12-18 5.12 accounting

Clone Sequence Records

RE68566.complete Sequence

2206 bp (2206 high quality bases) assembled on 2003-07-07

GenBank Submission: AY071641

> RE68566.complete
AGTAGCTCGCCACCCTCGGAACGGAACGGTTCGGAAACTCGCGAAAAGCG
GCAAAGATATACTATACCTCACCTCGTCGCTTTATCACTAACAAAAGCAA
AACATTCTGGACGCGAACACAGCTGTGAATACGGATTTCAGTTAGTTTAT
TTAACCATTTGCGTGCGACACTCGCCTTGGGCCAAGTTTGAAGTATTTTC
CAAGCTGGCATTATTGTAATTAGCCTGTCCGTAGAGACTACGAATCGAGA
CAAACAATAATAAAACGCAGAATAATTGCGCTGGAAATAATGTGCGCGGC
TAAAAGCGTTAACGTAACGGCTAAATAATAGTAGAAAGTTTTTATTGTTA
TCTCTTCTTCTGAGCCGCAGCTGCCAAAAACCGAACAACCATAGCAAGAG
CTTTTAAAATTTTGCGTGTGAACAGAAAAGAAATCCGCATTCGGCCGCAT
ATCATCGACTTCATGTGATTGTGTGTGCCCGGCTTACCAAAATTGGCAAC
GTTCAGACGCCGCTCGGTCAATATTTCGGCCAAATATCTAAGATACGCCA
TAGTCAAAATACAAGCAAACCAAAAACATGTCAGGTCCACTGCCCGAAAT
CAGCGAAGAACAGCGCGCCATATTGGAGAAGTTTCGCAAGCAAATGGATG
ATGCGTTGGTTGGAACCCACGACGATTACTTCTTGGTGCGCTGGCTAAGA
GCTCGAAAATGGAATCTGGAGGCAGCGGAGAAAATGCTGAGAGCTAGTTT
GAAAACACGCGCCATGTGGAATGTGGACAACATCGAGAAGTGGGATCCAC
CGAAGGCATTGCAGGAGTATCTGCCATACGGCCTCATGGGCTACGACAAC
GAAGGATCACCGGTGCTGGTCTGCCCCTTTGCCAACTTCGACATGTGGGG
CATGATGCACTGCGTCACGCGGTTTGAGTTCCAAAAGTACCTGGTCCTGC
TGCTCGAGCGCTTCATGAAGATCGCCTACGATCAGAGTCAAAAGCACGGA
TGGCGAGCCCGCCAGCTGGTTGTATTTTTCGACATGCAGGATGTGAACCT
GAAGCAGTACGCCTGGCGACCGGCTGCCGAATGTGTGATCTCTACGGTGA
AGCAATACGAGGCCAACTTCCCGGAGCTCCTCAAGATGTGCTACATCATC
AACGCACCCAAGCTCTTCTCGGTGGCGTTCAACATTGTTAAGAAATTCCT
GGACGAGAACACCACCAGCAAGATCGTGATCTACAAATCCGGAGTGGACC
GCTGGCAGGAGCAACTCTTCTCCCATGTGAACCGAAAGGCATTTCCGAAG
GCCTGGGGCGGCGAGATGGTGGACAGGAACGGAGATCCCCAGTGCAAGGC
ACTGATGGTCTGGGGAGGCAAGCTGCCGGAGGAGCTTTACATTGATCAGA
GTAGCCAGCAGAGCGATCGAGACTTTGTGGAGGCCCAGGTTCCCAAGGGC
GACAAGTTGAAGCTGCACTTTAAGGTCAACGTTGAGGAGCAGAAGATCCT
CTCCTGGGAGTTCCGCACCTTTGACTACGACATCAAATTCGGCATCTACA
GCGTGGACGACAAGACGGGCGAGAAGCGCAGCGAGGTGCCCCTGGGAACC
GTGTACTCCAACGAGATGGACGAGATTGGTTACATCTCTACACGACCGAA
CACCACTTACACGGTGGTTTTCGACAACTCCGCCAGCTACCTGCGCAGCA
AGAAGCTCCGCTACTGGGTGGACCTCATCTCTGAGGAGGAGGAGGGCATA
TCCGAGCTGACCACCCAGATGGACAACACTCAGATTGCGAATCAGCAGTG
AACGGGAGCTATTCACCGCGCGACCAGCAACCAAGCCAAAAACCGACGGG
AGTAGATAGATTATTAGGTAGACGACAACACAAACTAACCTCGGTGCAAT
AGTCACAAAGCATTTTGCCAGATCTCCGCTGCCATCTGCTCCTTCGGAGT
CCGCATGGCAGCATCTCTGGCGCATCTGCAATCGAACTATGTGATAGAAA
CAAATTAGCAAAAGGAACACAGAAGTATGACTCACACCTACATTTATAGA
TAATCGATAATCTTTTTATTACATAGCCGCACTAGCCGCACTGTTTAGTT
AACAATTTATAATCTTGGATGTGTAATTTGTTTTCATGCCCAATATTTCA
GGGAGTACAGCGCAATAAAATGTATATAGCATCTGATCCCCAAAAAAAAA
AAAAAA

RE68566.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-RA 2230 CG13893-RA 1..2194 1..2194 10970 100 Plus
CG13893.a 1574 CG13893.a 44..1538 700..2194 7475 100 Plus
CG12030.c 1855 CG12030.c 1..462 1324..863 2310 100 Minus
CG12030.c 1855 CG12030.c 526..643 863..746 590 100 Minus
CG12030.c 1855 CG12030.c 765..836 701..630 360 100 Minus
CG12030.c 1855 CG12030.c 649..694 745..700 230 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 599517..600312 1658..863 3980 100 Minus
chr3L 24539361 chr3L 603209..603837 631..1 2955 98.3 Minus
chr3L 24539361 chr3L 598923..599455 2191..1659 2665 100 Minus
chr3L 24539361 chr3L 600376..600493 863..746 590 100 Minus
chr3L 24539361 chr3L 600672..600743 701..630 345 98.6 Minus
chr3L 24539361 chr3L 600557..600602 745..700 230 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 599688..600483 1658..863 3980 100 Minus
3L 28110227 3L 603371..604001 631..1 3155 100 Minus
3L 28110227 3L 599091..599626 2194..1659 2680 100 Minus
3L 28110227 3L 600547..600664 863..746 590 100 Minus
3L 28110227 3L 600843..600914 701..630 360 100 Minus
3L 28110227 3L 600727..600772 745..700 230 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 599688..600483 1658..863 3980 100 Minus
3L 28103327 3L 603371..604001 631..1 3155 100 Minus
3L 28103327 3L 599091..599626 2194..1659 2680 100 Minus
3L 28103327 3L 600547..600664 863..746 590 100 Minus
3L 28103327 3L 600843..600914 701..630 360 100 Minus
3L 28103327 3L 600727..600772 745..700 230 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:29:19 has no hits.

RE68566.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:30:17 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 598923..599455 1659..2191 100 <- Minus
chr3L 599517..600311 864..1658 100 <- Minus
chr3L 600376..600493 746..863 100 <- Minus
chr3L 600557..600600 702..745 100 <- Minus
chr3L 600672..600741 632..701 98 <- Minus
chr3L 603209..603837 1..631 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:30 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1..1224 578..1801 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:31:24 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1..1224 578..1801 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:30:47 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1..1224 578..1801 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:05:04 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1..1224 578..1801 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:59:59 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1..1224 578..1801 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:32:38 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1..2191 1..2191 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:31:24 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1..2191 1..2191 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:30:47 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 8..2198 1..2191 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:05:04 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1..2191 1..2191 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:59:59 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 8..2198 1..2191 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:17 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
3L 599094..599626 1659..2191 100 <- Minus
3L 599688..600482 864..1658 100 <- Minus
3L 600547..600664 746..863 100 <- Minus
3L 600727..600770 702..745 100 <- Minus
3L 600843..600912 632..701 100 <- Minus
3L 603371..604001 1..631 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:17 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
3L 599094..599626 1659..2191 100 <- Minus
3L 599688..600482 864..1658 100 <- Minus
3L 600547..600664 746..863 100 <- Minus
3L 600727..600770 702..745 100 <- Minus
3L 600843..600912 632..701 100 <- Minus
3L 603371..604001 1..631 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:17 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
3L 599094..599626 1659..2191 100 <- Minus
3L 599688..600482 864..1658 100 <- Minus
3L 600547..600664 746..863 100 <- Minus
3L 600727..600770 702..745 100 <- Minus
3L 600843..600912 632..701 100 <- Minus
3L 603371..604001 1..631 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:30:47 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 599094..599626 1659..2191 100 <- Minus
arm_3L 599688..600482 864..1658 100 <- Minus
arm_3L 600547..600664 746..863 100 <- Minus
arm_3L 600727..600770 702..745 100 <- Minus
arm_3L 600843..600912 632..701 100 <- Minus
arm_3L 603371..604001 1..631 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:43:12 Download gff for RE68566.complete
Subject Subject Range Query Range Percent Splice Strand
3L 599094..599626 1659..2191 100 <- Minus
3L 599688..600482 864..1658 100 <- Minus
3L 600547..600664 746..863 100 <- Minus
3L 600727..600770 702..745 100 <- Minus
3L 600843..600912 632..701 100 <- Minus
3L 603371..604001 1..631 100   Minus

RE68566.hyp Sequence

Translation from 577 to 1800

> RE68566.hyp
MSGPLPEISEEQRAILEKFRKQMDDALVGTHDDYFLVRWLRARKWNLEAA
EKMLRASLKTRAMWNVDNIEKWDPPKALQEYLPYGLMGYDNEGSPVLVCP
FANFDMWGMMHCVTRFEFQKYLVLLLERFMKIAYDQSQKHGWRARQLVVF
FDMQDVNLKQYAWRPAAECVISTVKQYEANFPELLKMCYIINAPKLFSVA
FNIVKKFLDENTTSKIVIYKSGVDRWQEQLFSHVNRKAFPKAWGGEMVDR
NGDPQCKALMVWGGKLPEELYIDQSSQQSDRDFVEAQVPKGDKLKLHFKV
NVEEQKILSWEFRTFDYDIKFGIYSVDDKTGEKRSEVPLGTVYSNEMDEI
GYISTRPNTTYTVVFDNSASYLRSKKLRYWVDLISEEEEGISELTTQMDN
TQIANQQ*

RE68566.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-PA 407 CG13893-PA 1..407 1..407 2167 100 Plus
retm-PC 659 CG9528-PC 214..589 5..357 276 22.2 Plus
retm-PA 659 CG9528-PA 214..589 5..357 276 22.2 Plus
retm-PB 707 CG9528-PB 214..589 5..357 276 22.2 Plus

RE68566.pep Sequence

Translation from 577 to 1800

> RE68566.pep
MSGPLPEISEEQRAILEKFRKQMDDALVGTHDDYFLVRWLRARKWNLEAA
EKMLRASLKTRAMWNVDNIEKWDPPKALQEYLPYGLMGYDNEGSPVLVCP
FANFDMWGMMHCVTRFEFQKYLVLLLERFMKIAYDQSQKHGWRARQLVVF
FDMQDVNLKQYAWRPAAECVISTVKQYEANFPELLKMCYIINAPKLFSVA
FNIVKKFLDENTTSKIVIYKSGVDRWQEQLFSHVNRKAFPKAWGGEMVDR
NGDPQCKALMVWGGKLPEELYIDQSSQQSDRDFVEAQVPKGDKLKLHFKV
NVEEQKILSWEFRTFDYDIKFGIYSVDDKTGEKRSEVPLGTVYSNEMDEI
GYISTRPNTTYTVVFDNSASYLRSKKLRYWVDLISEEEEGISELTTQMDN
TQIANQQ*

RE68566.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25037-PA 407 GF25037-PA 1..407 1..407 1975 90.4 Plus
Dana\GF15388-PA 658 GF15388-PA 214..565 5..333 282 23.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14655-PA 407 GG14655-PA 1..407 1..407 2197 100 Plus
Dere\GG23623-PA 659 GG23623-PA 214..565 5..333 283 23.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15210-PA 408 GH15210-PA 1..408 1..407 1788 77.7 Plus
Dgri\GH10983-PA 657 GH10983-PA 210..478 5..280 271 24 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-PA 407 CG13893-PA 1..407 1..407 2167 100 Plus
retm-PC 659 CG9528-PC 214..589 5..357 276 22.2 Plus
retm-PA 659 CG9528-PA 214..589 5..357 276 22.2 Plus
retm-PB 707 CG9528-PB 214..589 5..357 276 22.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16730-PA 407 GI16730-PA 1..406 1..405 1850 82.8 Plus
Dmoj\GI17495-PA 657 GI17495-PA 210..564 5..334 279 22.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22595-PA 398 GL22595-PA 1..398 1..407 1951 87.5 Plus
Dper\GL26257-PA 665 GL26257-PA 212..486 5..286 272 23.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12607-PA 407 GA12607-PA 1..407 1..407 2005 88.9 Plus
Dpse\GA21858-PA 669 GA21858-PA 212..482 5..282 273 23.8 Plus
Dpse\GA24753-PA 74 GA24753-PA 1..61 23..92 189 57.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14271-PA 407 GM14271-PA 1..407 1..407 2180 99.3 Plus
Dsec\GM17940-PA 659 GM17940-PA 214..565 5..333 277 23.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13526-PA 407 GD13526-PA 1..407 1..407 2191 99.5 Plus
Dsim\GD22577-PA 659 GD22577-PA 214..565 5..333 276 23.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12473-PA 407 GJ12473-PA 1..407 1..406 1855 83 Plus
Dvir\GJ15159-PA 657 GJ15159-PA 210..563 5..333 276 22.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17210-PA 414 GK17210-PA 1..413 1..407 1861 84.5 Plus
Dwil\GK15352-PA 671 GK15352-PA 215..474 5..271 276 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21015-PA 407 GE21015-PA 1..407 1..407 2178 98.8 Plus
Dyak\GE18443-PA 659 GE18443-PA 214..565 5..333 282 23.4 Plus