Clone RE68592 Report

Search the DGRC for RE68592

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:685
Well:92
Vector:pFlc-1
Associated Gene/TranscriptCG1673-RA
Protein status:RE68592.pep: gold
Preliminary Size:1125
Sequenced Size:2525

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1673 2002-01-01 Sim4 clustering to Release 2
CG1673 2003-01-01 Sim4 clustering to Release 3
CG1673 2003-02-21 Blastp of sequenced clone
CG1673 2008-04-29 Release 5.5 accounting
CG1673 2008-08-15 Release 5.9 accounting
CG1673 2008-12-18 5.12 accounting

Clone Sequence Records

RE68592.complete Sequence

2525 bp (2525 high quality bases) assembled on 2003-02-21

GenBank Submission: BT004848

> RE68592.complete
ATTTTCTTGCAGAGACTTCGTGCCGTGAAGATCGAACTGAGAAAAGAAAA
AGAGCAGAAGCAGAAGGGCTGTAGAAAGAAAAAAAGAAAGTAAATCCATA
CACCGAAATAAAACACAACTGCGTGCTTTAAGAATTTTTTTTTTACTGTG
CAAAGTGCAGCAGTTCCTTGCTCATTAAACTAGAACCAAGAAATACAATA
TTTAACGCGTCAGTTCGCGTAAGTGCGGCAAAGTGCGAGTGCAAGAGACG
CTAAACGAGCGATACAAAAAAAAAAAAAAAAACGGAAATTTCGTAGAGCA
GCAAAGCGAGTCCAAATCCAAAAGTTTCTGAAAGTAACGAGACAGAAGAT
TTCGCAGCCAAATTCAACAAGATGACGACCAAAATGGCAATTAACGCAAA
GGATATTTTCCGCAATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGA
TCCGGTTGTGCAGCAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTG
CAACAGAAATCGTCGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCA
ATACACCAGTGCCCCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATC
AGTTCCGTGCCTCACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTG
CAGCCCAAGCCGGACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCAC
CGATCACATGCTCAAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGC
GACCGGAGATTACGCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAG
GTCCTGCACTACGCCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGG
CGTCGATGGCAAGATCCGCATCTTCCGGCCGGACATGAACATGAACCGCA
TGAACCTGGCCGCCCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAG
TTCGTCCAGTGCCTGTCCCGCCTGCTGTCCATTGATTCCGAGTGGGTTCC
TCACACGGACACCGCCAGCTTGTACATCCGCCCCACACTGATCGGCATTG
ATCCCACACTGGGAGTTGCTTCCTCCGACTCGGCCCTGCTCTACACGATC
CTCAGCCCCGTGGGCAGTTACTTTAAGACAGGCTCGTCCGGTGCCGTCTC
CCTGCTGGCCGATCCCAGTTATGTTCGTGCCTGGCCAGGCGGCGTGGGCA
ATCGCAAAATGGGCTCCAACTACGCACCCACAATCAATGTGCAGAAGGAG
GCGGCCGCCAAGGGACTGCAGCAGGTGCTGTGGCTCTACGGCGAGGATCA
TCAGCTAACCGAAGTGGGCACCATGAACATCTTTATGTTCTTCGTGAACG
ATCAAGGAGAACAAGAACTGGTTACCCCACCGCTGAGCGGTCTAATCCTG
CCCGGTATCACCCGCGACTCCATCCTGCGCATGACCCGCCAGTGGGGCAA
GTTTAAGGTTAGCGAGGCGAACATCACCATGCCCATGGTCTGTGAGCTCC
TCAACCAGGGAAGGCTGCTGGAGCTCTTTGGTGCGGGAACGGCGTGCGTG
GTTAGCCCCGTGAACAGGATCAGCTACCTTGGCCAGGATCTGTATATACC
CACCATGGAGCAGGAGAAGCCCGTTCACGAGCTGATCCGCGAAACGCTCA
CCGACATTCAGTACGGTCGGGTGGATCATCCGTGGGCGGTGGTGATCGAC
TAAGTCGATCTCCCAGCCGATCCCAGCCAGAAAGCATCCAACCCCAGAGC
TGTTACCCTTTCCCGTTACCTTACCGCATCCCTTTCCCGTACCGTGTATT
AGTAGGATTTAGTGCCAAGTGTTTTGTGGGTCGCCAATGTGCTCGAATTT
GTTTCGTTTATTGTGCATGTGTCTATATGCTTGCATATATCGGATATGTA
CAATATATATATATATATATATATTATATAATATAGTAGGATATAAGTCG
AGGGCCGATTCGTTAAGTTGCATTTAAATGTATATTTATTTATTTATGTC
AGGAATTCGAATTGTACATAATTCCAACTGGTTCAATGTTATTTATAGTT
TCCCTAATTATTTTCATATTTTTAGTTGTGCGCCTTTAGATATATATATA
TATATTTTTTTTTTTTTTACTTTATCTAAAGCTATGAATCGTCTTTTTGC
GCTTTTACTTCCAAGCAGCATCGAAAGCAAGGTAAAATTACCAACTACAA
ATTTTAGGACTAGTATAAAGAGATCGAGAATTCCCCCATCCAAGTGACGG
GAATTAATTGAAAACGTACCGGAGGCGAAATGCATTTATTAGTGAGTAAG
TGATCGAAGCGTTCTTGGAGGTAAAAGCGGCACGAGAGGCACGAGGGCAG
CAGCCGAGCTGAGCTGTGACTAAAGCTAATCTGAACCTGAACCCGTCAGT
AGAACCTAGGCCTAGGCTGTAGATACTAAACCCGAATCAAGCTGTATACT
ATATCTGTAACACCTAGTTGATAAGCGAACCAAGCGATGAATAAACGATG
ACAAAAATCAAAAAAAAAAAAAAAA

RE68592.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-RA 2572 CG1673-RA 12..2518 3..2511 12490 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13290999..13291994 1514..2509 4965 99.9 Plus
chrX 22417052 chrX 13289356..13289777 400..821 2080 99.5 Plus
chrX 22417052 chrX 13287679..13288072 3..402 1810 98 Plus
chrX 22417052 chrX 13290403..13290709 1053..1359 1535 100 Plus
chrX 22417052 chrX 13290102..13290334 820..1052 1150 99.6 Plus
chrX 22417052 chrX 13290775..13290931 1358..1514 785 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13400229..13401226 1514..2511 4990 100 Plus
X 23542271 X 13398583..13399004 400..821 2110 100 Plus
X 23542271 X 13396904..13397301 3..402 1935 99.5 Plus
X 23542271 X 13399633..13399939 1053..1359 1535 100 Plus
X 23542271 X 13399329..13399561 820..1052 1165 100 Plus
X 23542271 X 13400005..13400161 1358..1514 785 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13408327..13409324 1514..2511 4990 100 Plus
X 23527363 X 13406681..13407102 400..821 2110 100 Plus
X 23527363 X 13405002..13405399 3..402 1945 99.5 Plus
X 23527363 X 13407731..13408037 1053..1359 1535 100 Plus
X 23527363 X 13407427..13407659 820..1052 1165 100 Plus
X 23527363 X 13408103..13408259 1358..1514 785 100 Plus
Blast to na_te.dros performed 2019-03-16 19:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tirant 8526 Tirant TIRANT 8526bp 458..686 2168..1937 124 56.3 Minus

RE68592.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:36:55 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13287678..13288071 1..401 97 -> Plus
chrX 13289358..13289777 402..821 99 -> Plus
chrX 13290104..13290334 822..1052 99 -> Plus
chrX 13290403..13290709 1053..1359 100 -> Plus
chrX 13290777..13290931 1360..1514 100 -> Plus
chrX 13291000..13291994 1515..2509 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:32 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 1..1332 372..1703 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:28 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 1..1332 372..1703 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:29 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 1..1332 372..1703 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:51 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 1..1332 372..1703 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:02 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 1..1332 372..1703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:02:12 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 11..2516 1..2509 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:28 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 11..2516 1..2509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:29 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 5..2510 1..2509 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:51 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 11..2516 1..2509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:02 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 5..2510 1..2509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:55 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
X 13396903..13397300 1..401 99 -> Plus
X 13398585..13399004 402..821 100 -> Plus
X 13399331..13399561 822..1052 100 -> Plus
X 13399633..13399939 1053..1359 100 -> Plus
X 13400007..13400161 1360..1514 100 -> Plus
X 13400230..13401224 1515..2509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:55 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
X 13396903..13397300 1..401 99 -> Plus
X 13398585..13399004 402..821 100 -> Plus
X 13399331..13399561 822..1052 100 -> Plus
X 13399633..13399939 1053..1359 100 -> Plus
X 13400007..13400161 1360..1514 100 -> Plus
X 13400230..13401224 1515..2509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:55 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
X 13396903..13397300 1..401 99 -> Plus
X 13398585..13399004 402..821 100 -> Plus
X 13399331..13399561 822..1052 100 -> Plus
X 13399633..13399939 1053..1359 100 -> Plus
X 13400007..13400161 1360..1514 100 -> Plus
X 13400230..13401224 1515..2509 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:29 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13294040..13294194 1360..1514 100 -> Plus
arm_X 13290936..13291333 1..401 99 -> Plus
arm_X 13292618..13293037 402..821 100 -> Plus
arm_X 13293364..13293594 822..1052 100 -> Plus
arm_X 13293666..13293972 1053..1359 100 -> Plus
arm_X 13294263..13295257 1515..2509 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:16 Download gff for RE68592.complete
Subject Subject Range Query Range Percent Splice Strand
X 13405001..13405398 1..401 99 -> Plus
X 13406683..13407102 402..821 100 -> Plus
X 13407429..13407659 822..1052 100 -> Plus
X 13407731..13408037 1053..1359 100 -> Plus
X 13408105..13408259 1360..1514 100 -> Plus
X 13408328..13409322 1515..2509 100   Plus

RE68592.pep Sequence

Translation from 371 to 1702

> RE68592.pep
MTTKMAINAKDIFRNQHRLIRFLEQSIRLCSNQSLKAAQAAQLQQKSSAD
FEITASLDAQYTSAPEPIKHDKNLGHQFRASQISVRLAAPEQLQPKPDND
EELGFGRLFTDHMLKIYYHKSLGGWQRPEITPLENLVMHPAAKVLHYAVE
LFEGMKAYRGVDGKIRIFRPDMNMNRMNLAAQRSGLPTFEGKEFVQCLSR
LLSIDSEWVPHTDTASLYIRPTLIGIDPTLGVASSDSALLYTILSPVGSY
FKTGSSGAVSLLADPSYVRAWPGGVGNRKMGSNYAPTINVQKEAAAKGLQ
QVLWLYGEDHQLTEVGTMNIFMFFVNDQGEQELVTPPLSGLILPGITRDS
ILRMTRQWGKFKVSEANITMPMVCELLNQGRLLELFGAGTACVVSPVNRI
SYLGQDLYIPTMEQEKPVHELIRETLTDIQYGRVDHPWAVVID*

RE68592.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19410-PA 442 GF19410-PA 1..442 1..443 2272 94.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17780-PA 439 GG17780-PA 1..439 5..443 2340 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24496-PA 445 GH24496-PA 1..445 1..443 2117 87.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-PA 443 CG1673-PA 1..443 1..443 2299 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15251-PA 443 GI15251-PA 1..443 1..443 2172 88.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26922-PA 443 GL26922-PA 1..443 1..443 2184 92.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14112-PA 443 GA14112-PA 1..443 1..443 2184 92.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11632-PA 443 GM11632-PA 1..443 1..443 2362 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17125-PA 180 GD17125-PA 1..180 264..443 965 98.3 Plus
Dsim\GD18219-PA 164 GD18219-PA 1..164 280..443 873 98.2 Plus
Dsim\GD17124-PA 135 GD17124-PA 1..36 1..36 187 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14823-PA 438 GJ14823-PA 1..438 5..443 2126 88.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25289-PA 443 GK25289-PA 1..443 1..443 2179 91.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17074-PA 438 GE17074-PA 1..438 5..443 2299 97 Plus

RE68592.hyp Sequence

Translation from 371 to 1702

> RE68592.hyp
MTTKMAINAKDIFRNQHRLIRFLEQSIRLCSNQSLKAAQAAQLQQKSSAD
FEITASLDAQYTSAPEPIKHDKNLGHQFRASQISVRLAAPEQLQPKPDND
EELGFGRLFTDHMLKIYYHKSLGGWQRPEITPLENLVMHPAAKVLHYAVE
LFEGMKAYRGVDGKIRIFRPDMNMNRMNLAAQRSGLPTFEGKEFVQCLSR
LLSIDSEWVPHTDTASLYIRPTLIGIDPTLGVASSDSALLYTILSPVGSY
FKTGSSGAVSLLADPSYVRAWPGGVGNRKMGSNYAPTINVQKEAAAKGLQ
QVLWLYGEDHQLTEVGTMNIFMFFVNDQGEQELVTPPLSGLILPGITRDS
ILRMTRQWGKFKVSEANITMPMVCELLNQGRLLELFGAGTACVVSPVNRI
SYLGQDLYIPTMEQEKPVHELIRETLTDIQYGRVDHPWAVVID*

RE68592.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-PA 443 CG1673-PA 1..443 1..443 2299 100 Plus