Clone RE68603 Report

Search the DGRC for RE68603

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:686
Well:3
Vector:pFlc-1
Associated Gene/TranscriptCG2662-RA
Protein status:RE68603.pep: gold
Preliminary Size:1402
Sequenced Size:1665

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2662 2001-12-13 Blastp of sequenced clone
CG2662 2002-01-01 Sim4 clustering to Release 2
CG2662 2003-01-01 Sim4 clustering to Release 3
CG2662 2008-04-29 Release 5.5 accounting
CG2662 2008-08-15 Release 5.9 accounting
CG2662 2008-12-18 5.12 accounting

Clone Sequence Records

RE68603.complete Sequence

1665 bp (1665 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070582

> RE68603.complete
AAAATATTGTGTTCATCGCGCCATTCAAAGTACTGACATTTACATTTTGT
TAGCAACGCTTTTCGAGAACAAACCGGTGACTATGAAACAATCCAAGGAC
GAAGACAAGGAGGAATCGCCGGTTCAACCGACGACCCACAATTCCAGCGC
AGGCAGCAACGGCCACGACGCCAAATCTCCGGTGGTCACTACTGCACCAG
CGGCAACTTGTTCCGTATCGGTTTCGGATGCTTCGGGGGCCGGAGCTTCC
GTTCGCACCACTGGACGGGTGAAGAAACCCAAACAGGTGTACGATCCCTC
GGACAACTATGTGTCCCGGGCCAGCAGCAACCGCAACTCTCTCTCTTCAG
TCCCGGCCACCTCCAATGTCCAGTCACCGCCAGTCAAGGAGGCCACCGAT
TCGCAGGACTCCACAACCAGTCCTGTTTCGGAGCAGCAGCAGCAGCAGCT
ACAGCAAGCGGCTCAACTTCGCAACTTCGACACGTGCCAGAAGTGTGGCA
AAAGCGAACCCAAGCGCGGATCTGGCCATAAGAGCAACTTCCTCACTTGC
AAGGGCTGCATGCAGAAATGGCACTTCCCCTGCTTGCCGATCACGTTCCA
CAACCAGAGCACAGCCCGCAAGAAGTTCAAGTGCGACAAGTGTCGCTACT
GCCGGTTATGCAACGTGAGGGGGCCAGGTCTTTCCATTTGCAGTTTATGC
GTGGATGCCTATCACCCGGACTGCAATGATCCCACTCTCAAGCAGAGCAA
AGCCGTCGAGGCCAATCCCAATTGGAGATGCTTCCGATGCGAGGCGTGTA
ACATCGGCGGCAGCACGAGTGCATCCAGCGAGGAGCAAACGGGGGCCAGG
AAATCCACTGCGAGCCGCGAGGACCAGGCCCAGCCGGTGGTGCCGAGGAA
GTCGAATGCGGGTCGCAAGAAGCGCGTCCAATCGGAGCCCACCGGGCAAG
AAAAGGCAGCGAAGATTGAGAAGCTAGCCAAACGTAGACAGCCCTTGAAA
ACAGAAAAGAAGAAAGAGTACAAAAAGGAGGAGGATGAGGAGCCGGCACA
AATAAAAGTCAAGGTGGAGAAGGTCGAGCCGGTAGATATGGAGACTGAGC
AGATTGAGAATAACGATCTGCCTGGGCCAGAACAGGAATCGCTTTCCTTA
CGCCTAACGCCAATCACAGCTGTAGAGAGAAGAAGCCATCCAGTATCAAC
CTGGTCCGTGGAACAGGTCGTCCAATTTGTTGCCAAGCGCTATCCGAAGG
AGGCGAACGTGTTCCGCTACCAGGACATTGATGGCGCCTCCCTGCTGCTG
CTCAATCGCCACGATGTGATGAACGGATTCGGTTTGAAGCTGGGACCGGC
GCTGCGCGTCTTCGAACTCGTGATGTCCCTGCAGACTCAATCCAATGACG
TTGGCCTCGCCTGGCTAGATTAGCGTCCCCACCCACCTCCTTAGCACCTA
ATGTCATGTACCACACTTAATTTAAATCAATACTCTCTTCTGTAGCCATC
GCAACCGCATCACTTCGCAGCCAATAAAGCTTATATTAAGTCTTCTGGCG
GATGGCTAAGATTTTGCTTTAGTTTTAAAAATGTTCCGTAATCCCACACT
CGCAAATGCACATACTTTTGAATGGTATCTGCTGAATTTGCAAAAAAAGA
AAAAAAAAAAAAAAA

RE68603.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2662-RA 1878 CG2662-RA 103..1744 2..1643 8210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2593658..2594731 570..1643 5370 100 Plus
chrX 22417052 chrX 2592858..2593155 273..570 1490 100 Plus
chrX 22417052 chrX 2592522..2592794 2..274 1365 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:12:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2699842..2700915 570..1643 5370 100 Plus
X 23542271 X 2699042..2699339 273..570 1490 100 Plus
X 23542271 X 2698706..2698978 2..274 1365 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2707940..2709013 570..1643 5370 100 Plus
X 23527363 X 2707140..2707437 273..570 1490 100 Plus
X 23527363 X 2706804..2707076 2..274 1365 100 Plus
Blast to na_te.dros performed 2019-03-16 03:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 929..981 773..721 112 67.9 Minus

RE68603.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:48:30 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2592520..2592794 1..274 99 -> Plus
chrX 2592860..2593154 275..569 100 -> Plus
chrX 2593658..2594735 570..1649 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:32 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 1..1341 83..1423 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:14:59 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 1..1341 83..1423 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:08 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 1..1341 83..1423 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:40:11 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 1..1341 83..1423 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:14:43 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 1..1341 83..1423 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:46:41 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 1..1647 1..1646 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:14:59 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 1..1647 1..1646 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:08 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 4..1645 1..1641 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:40:11 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 1..1647 1..1646 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:14:43 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RB 4..1651 1..1649 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:48:30 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
X 2698704..2698978 1..274 99 -> Plus
X 2699044..2699338 275..569 100 -> Plus
X 2699842..2700919 570..1649 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:48:30 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
X 2698704..2698978 1..274 99 -> Plus
X 2699044..2699338 275..569 100 -> Plus
X 2699842..2700919 570..1649 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:48:30 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
X 2698704..2698978 1..274 99 -> Plus
X 2699044..2699338 275..569 100 -> Plus
X 2699842..2700919 570..1649 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:08 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2592737..2593011 1..274 99 -> Plus
arm_X 2593077..2593371 275..569 100 -> Plus
arm_X 2593875..2594952 570..1649 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:17:00 Download gff for RE68603.complete
Subject Subject Range Query Range Percent Splice Strand
X 2706802..2707076 1..274 99 -> Plus
X 2707142..2707436 275..569 100 -> Plus
X 2707940..2709017 570..1649 99   Plus

RE68603.hyp Sequence

Translation from 0 to 1422

> RE68603.hyp
KYCVHRAIQSTDIYILLATLFENKPVTMKQSKDEDKEESPVQPTTHNSSA
GSNGHDAKSPVVTTAPAATCSVSVSDASGAGASVRTTGRVKKPKQVYDPS
DNYVSRASSNRNSLSSVPATSNVQSPPVKEATDSQDSTTSPVSEQQQQQL
QQAAQLRNFDTCQKCGKSEPKRGSGHKSNFLTCKGCMQKWHFPCLPITFH
NQSTARKKFKCDKCRYCRLCNVRGPGLSICSLCVDAYHPDCNDPTLKQSK
AVEANPNWRCFRCEACNIGGSTSASSEEQTGARKSTASREDQAQPVVPRK
SNAGRKKRVQSEPTGQEKAAKIEKLAKRRQPLKTEKKKEYKKEEDEEPAQ
IKVKVEKVEPVDMETEQIENNDLPGPEQESLSLRLTPITAVERRSHPVST
WSVEQVVQFVAKRYPKEANVFRYQDIDGASLLLLNRHDVMNGFGLKLGPA
LRVFELVMSLQTQSNDVGLAWLD*

RE68603.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2662-PB 446 CG2662-PB 1..446 28..473 2341 100 Plus
CG2662-PA 446 CG2662-PA 1..446 28..473 2341 100 Plus

RE68603.pep Sequence

Translation from 82 to 1422

> RE68603.pep
MKQSKDEDKEESPVQPTTHNSSAGSNGHDAKSPVVTTAPAATCSVSVSDA
SGAGASVRTTGRVKKPKQVYDPSDNYVSRASSNRNSLSSVPATSNVQSPP
VKEATDSQDSTTSPVSEQQQQQLQQAAQLRNFDTCQKCGKSEPKRGSGHK
SNFLTCKGCMQKWHFPCLPITFHNQSTARKKFKCDKCRYCRLCNVRGPGL
SICSLCVDAYHPDCNDPTLKQSKAVEANPNWRCFRCEACNIGGSTSASSE
EQTGARKSTASREDQAQPVVPRKSNAGRKKRVQSEPTGQEKAAKIEKLAK
RRQPLKTEKKKEYKKEEDEEPAQIKVKVEKVEPVDMETEQIENNDLPGPE
QESLSLRLTPITAVERRSHPVSTWSVEQVVQFVAKRYPKEANVFRYQDID
GASLLLLNRHDVMNGFGLKLGPALRVFELVMSLQTQSNDVGLAWLD*

RE68603.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22447-PA 601 GF22447-PA 1..380 1..345 702 44.5 Plus
Dana\GF22447-PA 601 GF22447-PA 500..601 352..446 338 61.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18620-PA 462 GG18620-PA 1..462 1..446 1669 74.6 Plus
Dere\GG12566-PA 241 GG12566-PA 1..127 1..121 506 84.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12414-PA 515 GH12414-PA 64..298 57..285 432 41 Plus
Dgri\GH12414-PA 515 GH12414-PA 431..515 362..446 243 49.4 Plus
Dgri\GH12776-PA 101 GH12776-PA 26..101 371..446 187 43.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2662-PB 446 CG2662-PB 1..446 1..446 2341 100 Plus
CG2662-PA 446 CG2662-PA 1..446 1..446 2341 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15869-PA 537 GI15869-PA 1..316 1..286 473 36.5 Plus
Dmoj\GI15869-PA 537 GI15869-PA 462..537 371..446 278 59.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19912-PA 512 GL19912-PA 1..287 1..310 590 42.3 Plus
Dper\GL19912-PA 512 GL19912-PA 435..509 370..444 308 64 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15414-PA 510 GA15414-PA 1..507 1..444 808 38.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19240-PA 447 GM19240-PA 1..447 1..446 1983 88.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16615-PA 316 GD16615-PA 53..316 186..446 1115 86.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19027-PA 498 GJ19027-PA 1..498 1..446 682 35.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19801-PA 478 GK19801-PA 1..478 1..446 756 38.9 Plus
Dwil\GK11990-PA 886 GK11990-PA 801..886 359..442 165 37.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16273-PA 462 GE16273-PA 1..462 1..446 1710 76.7 Plus