BDGP Sequence Production Resources |
Search the DGRC for RE68603
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 686 |
Well: | 3 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2662-RA |
Protein status: | RE68603.pep: gold |
Preliminary Size: | 1402 |
Sequenced Size: | 1665 |
Gene | Date | Evidence |
---|---|---|
CG2662 | 2001-12-13 | Blastp of sequenced clone |
CG2662 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2662 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2662 | 2008-04-29 | Release 5.5 accounting |
CG2662 | 2008-08-15 | Release 5.9 accounting |
CG2662 | 2008-12-18 | 5.12 accounting |
1665 bp (1665 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070582
> RE68603.complete AAAATATTGTGTTCATCGCGCCATTCAAAGTACTGACATTTACATTTTGT TAGCAACGCTTTTCGAGAACAAACCGGTGACTATGAAACAATCCAAGGAC GAAGACAAGGAGGAATCGCCGGTTCAACCGACGACCCACAATTCCAGCGC AGGCAGCAACGGCCACGACGCCAAATCTCCGGTGGTCACTACTGCACCAG CGGCAACTTGTTCCGTATCGGTTTCGGATGCTTCGGGGGCCGGAGCTTCC GTTCGCACCACTGGACGGGTGAAGAAACCCAAACAGGTGTACGATCCCTC GGACAACTATGTGTCCCGGGCCAGCAGCAACCGCAACTCTCTCTCTTCAG TCCCGGCCACCTCCAATGTCCAGTCACCGCCAGTCAAGGAGGCCACCGAT TCGCAGGACTCCACAACCAGTCCTGTTTCGGAGCAGCAGCAGCAGCAGCT ACAGCAAGCGGCTCAACTTCGCAACTTCGACACGTGCCAGAAGTGTGGCA AAAGCGAACCCAAGCGCGGATCTGGCCATAAGAGCAACTTCCTCACTTGC AAGGGCTGCATGCAGAAATGGCACTTCCCCTGCTTGCCGATCACGTTCCA CAACCAGAGCACAGCCCGCAAGAAGTTCAAGTGCGACAAGTGTCGCTACT GCCGGTTATGCAACGTGAGGGGGCCAGGTCTTTCCATTTGCAGTTTATGC GTGGATGCCTATCACCCGGACTGCAATGATCCCACTCTCAAGCAGAGCAA AGCCGTCGAGGCCAATCCCAATTGGAGATGCTTCCGATGCGAGGCGTGTA ACATCGGCGGCAGCACGAGTGCATCCAGCGAGGAGCAAACGGGGGCCAGG AAATCCACTGCGAGCCGCGAGGACCAGGCCCAGCCGGTGGTGCCGAGGAA GTCGAATGCGGGTCGCAAGAAGCGCGTCCAATCGGAGCCCACCGGGCAAG AAAAGGCAGCGAAGATTGAGAAGCTAGCCAAACGTAGACAGCCCTTGAAA ACAGAAAAGAAGAAAGAGTACAAAAAGGAGGAGGATGAGGAGCCGGCACA AATAAAAGTCAAGGTGGAGAAGGTCGAGCCGGTAGATATGGAGACTGAGC AGATTGAGAATAACGATCTGCCTGGGCCAGAACAGGAATCGCTTTCCTTA CGCCTAACGCCAATCACAGCTGTAGAGAGAAGAAGCCATCCAGTATCAAC CTGGTCCGTGGAACAGGTCGTCCAATTTGTTGCCAAGCGCTATCCGAAGG AGGCGAACGTGTTCCGCTACCAGGACATTGATGGCGCCTCCCTGCTGCTG CTCAATCGCCACGATGTGATGAACGGATTCGGTTTGAAGCTGGGACCGGC GCTGCGCGTCTTCGAACTCGTGATGTCCCTGCAGACTCAATCCAATGACG TTGGCCTCGCCTGGCTAGATTAGCGTCCCCACCCACCTCCTTAGCACCTA ATGTCATGTACCACACTTAATTTAAATCAATACTCTCTTCTGTAGCCATC GCAACCGCATCACTTCGCAGCCAATAAAGCTTATATTAAGTCTTCTGGCG GATGGCTAAGATTTTGCTTTAGTTTTAAAAATGTTCCGTAATCCCACACT CGCAAATGCACATACTTTTGAATGGTATCTGCTGAATTTGCAAAAAAAGA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2662-RA | 1878 | CG2662-RA | 103..1744 | 2..1643 | 8210 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 2593658..2594731 | 570..1643 | 5370 | 100 | Plus |
chrX | 22417052 | chrX | 2592858..2593155 | 273..570 | 1490 | 100 | Plus |
chrX | 22417052 | chrX | 2592522..2592794 | 2..274 | 1365 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 929..981 | 773..721 | 112 | 67.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 2592520..2592794 | 1..274 | 99 | -> | Plus |
chrX | 2592860..2593154 | 275..569 | 100 | -> | Plus |
chrX | 2593658..2594735 | 570..1649 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2662-RA | 1..1341 | 83..1423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2662-RA | 1..1341 | 83..1423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2662-RA | 1..1341 | 83..1423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2662-RA | 1..1341 | 83..1423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2662-RA | 1..1341 | 83..1423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2662-RA | 1..1647 | 1..1646 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2662-RA | 1..1647 | 1..1646 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2662-RA | 4..1645 | 1..1641 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2662-RA | 1..1647 | 1..1646 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2662-RB | 4..1651 | 1..1649 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2698704..2698978 | 1..274 | 99 | -> | Plus |
X | 2699044..2699338 | 275..569 | 100 | -> | Plus |
X | 2699842..2700919 | 570..1649 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2698704..2698978 | 1..274 | 99 | -> | Plus |
X | 2699044..2699338 | 275..569 | 100 | -> | Plus |
X | 2699842..2700919 | 570..1649 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2698704..2698978 | 1..274 | 99 | -> | Plus |
X | 2699044..2699338 | 275..569 | 100 | -> | Plus |
X | 2699842..2700919 | 570..1649 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 2592737..2593011 | 1..274 | 99 | -> | Plus |
arm_X | 2593077..2593371 | 275..569 | 100 | -> | Plus |
arm_X | 2593875..2594952 | 570..1649 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2706802..2707076 | 1..274 | 99 | -> | Plus |
X | 2707142..2707436 | 275..569 | 100 | -> | Plus |
X | 2707940..2709017 | 570..1649 | 99 | Plus |
Translation from 0 to 1422
> RE68603.hyp KYCVHRAIQSTDIYILLATLFENKPVTMKQSKDEDKEESPVQPTTHNSSA GSNGHDAKSPVVTTAPAATCSVSVSDASGAGASVRTTGRVKKPKQVYDPS DNYVSRASSNRNSLSSVPATSNVQSPPVKEATDSQDSTTSPVSEQQQQQL QQAAQLRNFDTCQKCGKSEPKRGSGHKSNFLTCKGCMQKWHFPCLPITFH NQSTARKKFKCDKCRYCRLCNVRGPGLSICSLCVDAYHPDCNDPTLKQSK AVEANPNWRCFRCEACNIGGSTSASSEEQTGARKSTASREDQAQPVVPRK SNAGRKKRVQSEPTGQEKAAKIEKLAKRRQPLKTEKKKEYKKEEDEEPAQ IKVKVEKVEPVDMETEQIENNDLPGPEQESLSLRLTPITAVERRSHPVST WSVEQVVQFVAKRYPKEANVFRYQDIDGASLLLLNRHDVMNGFGLKLGPA LRVFELVMSLQTQSNDVGLAWLD*
Translation from 82 to 1422
> RE68603.pep MKQSKDEDKEESPVQPTTHNSSAGSNGHDAKSPVVTTAPAATCSVSVSDA SGAGASVRTTGRVKKPKQVYDPSDNYVSRASSNRNSLSSVPATSNVQSPP VKEATDSQDSTTSPVSEQQQQQLQQAAQLRNFDTCQKCGKSEPKRGSGHK SNFLTCKGCMQKWHFPCLPITFHNQSTARKKFKCDKCRYCRLCNVRGPGL SICSLCVDAYHPDCNDPTLKQSKAVEANPNWRCFRCEACNIGGSTSASSE EQTGARKSTASREDQAQPVVPRKSNAGRKKRVQSEPTGQEKAAKIEKLAK RRQPLKTEKKKEYKKEEDEEPAQIKVKVEKVEPVDMETEQIENNDLPGPE QESLSLRLTPITAVERRSHPVSTWSVEQVVQFVAKRYPKEANVFRYQDID GASLLLLNRHDVMNGFGLKLGPALRVFELVMSLQTQSNDVGLAWLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22447-PA | 601 | GF22447-PA | 1..380 | 1..345 | 702 | 44.5 | Plus |
Dana\GF22447-PA | 601 | GF22447-PA | 500..601 | 352..446 | 338 | 61.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18620-PA | 462 | GG18620-PA | 1..462 | 1..446 | 1669 | 74.6 | Plus |
Dere\GG12566-PA | 241 | GG12566-PA | 1..127 | 1..121 | 506 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12414-PA | 515 | GH12414-PA | 64..298 | 57..285 | 432 | 41 | Plus |
Dgri\GH12414-PA | 515 | GH12414-PA | 431..515 | 362..446 | 243 | 49.4 | Plus |
Dgri\GH12776-PA | 101 | GH12776-PA | 26..101 | 371..446 | 187 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2662-PB | 446 | CG2662-PB | 1..446 | 1..446 | 2341 | 100 | Plus |
CG2662-PA | 446 | CG2662-PA | 1..446 | 1..446 | 2341 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15869-PA | 537 | GI15869-PA | 1..316 | 1..286 | 473 | 36.5 | Plus |
Dmoj\GI15869-PA | 537 | GI15869-PA | 462..537 | 371..446 | 278 | 59.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19912-PA | 512 | GL19912-PA | 1..287 | 1..310 | 590 | 42.3 | Plus |
Dper\GL19912-PA | 512 | GL19912-PA | 435..509 | 370..444 | 308 | 64 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15414-PA | 510 | GA15414-PA | 1..507 | 1..444 | 808 | 38.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19240-PA | 447 | GM19240-PA | 1..447 | 1..446 | 1983 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16615-PA | 316 | GD16615-PA | 53..316 | 186..446 | 1115 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19027-PA | 498 | GJ19027-PA | 1..498 | 1..446 | 682 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19801-PA | 478 | GK19801-PA | 1..478 | 1..446 | 756 | 38.9 | Plus |
Dwil\GK11990-PA | 886 | GK11990-PA | 801..886 | 359..442 | 165 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16273-PA | 462 | GE16273-PA | 1..462 | 1..446 | 1710 | 76.7 | Plus |