BDGP Sequence Production Resources |
Search the DGRC for RE68712
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 687 |
Well: | 12 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Bet3-RA |
Protein status: | RE68712.pep: gold |
Sequenced Size: | 1127 |
Gene | Date | Evidence |
---|---|---|
CG3911 | 2004-08-13 | Blastp of sequenced clone |
CG3911 | 2008-04-29 | Release 5.5 accounting |
CG3911 | 2008-08-15 | Release 5.9 accounting |
CG3891 | 2008-08-15 | Release 5.9 accounting |
CG3911 | 2008-12-18 | 5.12 accounting |
CG3891 | 2008-12-18 | 5.12 accounting |
1127 bp (1127 high quality bases) assembled on 2004-08-13
GenBank Submission: BT015980
> RE68712.complete GTTGTACCCTGACAACCCTGCTCTGTAAAACTAGGAAAAACAGAAAATTT TATTTTCAATTGTTAAATATCCAAACGTAAACAGCCGGAAAATGTCACGA CAAGCCTCTCGTTTGGACGCCAAGAAAGTGAACTCGGAGTTCCTGACACT CACCTACGGAGCACTCGTCACCCAGATGCTGCGCGACTTCGAGAACGCCG AGGACGTGAACAAGCAGCTGGAGCGAATCGGCTACAACATGGGCATGCGA CTGATCGAGGACTTTCTGGCCAGGACATCGGCGCCACGCTGCCTCGAGAT GCGCGAGACGGCCGATCGCATCCAGCAGGCGTTCCGCATCTACCTGAATA TCCAGCCCACCATCTCGAACTGGTCGCCGGCCTCCGATGAGTTCTCCCTG GTATTCGATAGCAATCCGCTGACGGAGTTCGTCGAGCTGCCGCCTGACCT GACCAATCTGCGCTACAGTGCCATACTCAGCGGCTGCATCCGCGGCGCCC TGGAGATGGTGCAGCTGGAGGTGCAGTGCTGGTTCGTGCAGGATCAACTG AAGGGCGACAATGTGACGGAACTGCGCGTTAAGTTCGTGCGGCGTCTAGA GGAGGTCATACCAGCTGGCGAGGATTAGAAAACATTGGTGGATCAGTGCA TCGGAGCGCAAATAATGAGCTCTTCATTAAATGGGGGTCAATAAAAGCAC ATTCTGTATAGAAGTTAGCATCGAGTAATCTGCGTTTGTCGTCGTTTTCT ACACGCCAGTCCACATTCCGGAGCAAAAGCAGCAGGAGCAGCAAGCAGCG TCCACAGGAGCAACAAGCAGCATCAGGACAACAGGAGCGCAACAGCGGCA AAATAGCAATATTGGAGCAATAAGAATCGTTACAACAAGTTTAGTTTTAT GTTTTATTCGACTTTATACAAATGATTTAACTTGGGTATATAAGAAAACA GTAGAAAATATGTTTCTGTTCATATTTGGCATGATATAAAGCGTCATAAA CTCCATACAAAAAAACATAATATAGTATAATAGTATTCTATTATTTTTGA TTAATACAGTTTAACAAATGAAAGTCCCCCACATATAAATATATTATTAC GTCCCTAAGGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9430377..9430951 | 1111..537 | 2860 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 9431046..9431458 | 542..130 | 2065 | 100 | Minus |
chr3L | 24539361 | chr3L | 9433994..9434122 | 130..2 | 645 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9431581..9432156 | 1112..537 | 2880 | 100 | Minus |
3L | 28103327 | 3L | 9432249..9432661 | 542..130 | 2065 | 100 | Minus |
3L | 28103327 | 3L | 9435224..9435352 | 130..2 | 645 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord2 | 7650 | accord2 QBERT 7650bp | 1692..1776 | 963..1047 | 110 | 63.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9433994..9434122 | 1..130 | 99 | Minus | |
chr3L | 9430377..9430583 | 905..1111 | 100 | == | Minus |
chr3L | 9430711..9430946 | 542..777 | 99 | <- | Minus |
chr3L | 9431047..9431457 | 131..541 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3911-RA | 1..537 | 92..628 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Bet3-RA | 1..537 | 92..628 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Bet3-RA | 1..537 | 92..628 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3911-RA | 1..537 | 92..628 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Bet3-RA | 1..537 | 92..628 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3911-RA | 2..674 | 2..674 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Bet3-RA | 2..674 | 2..674 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Bet3-RA | 15..1125 | 1..1111 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3911-RA | 2..674 | 2..674 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Bet3-RA | 15..1125 | 1..1111 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9438482..9439051 | 542..1111 | 100 | <- | Minus |
3L | 9439150..9439560 | 131..541 | 100 | <- | Minus |
3L | 9442124..9442252 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9438482..9439051 | 542..1111 | 100 | <- | Minus |
3L | 9439150..9439560 | 131..541 | 100 | <- | Minus |
3L | 9442124..9442252 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9438482..9439051 | 542..1111 | 100 | <- | Minus |
3L | 9439150..9439560 | 131..541 | 100 | <- | Minus |
3L | 9442124..9442252 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9431582..9432151 | 542..1111 | 100 | <- | Minus |
arm_3L | 9432250..9432660 | 131..541 | 100 | <- | Minus |
arm_3L | 9435224..9435352 | 1..130 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9431582..9432151 | 542..1111 | 100 | <- | Minus |
3L | 9432250..9432660 | 131..541 | 100 | <- | Minus |
3L | 9435224..9435352 | 1..130 | 99 | Minus |
Translation from 91 to 627
> RE68712.pep MSRQASRLDAKKVNSEFLTLTYGALVTQMLRDFENAEDVNKQLERIGYNM GMRLIEDFLARTSAPRCLEMRETADRIQQAFRIYLNIQPTISNWSPASDE FSLVFDSNPLTEFVELPPDLTNLRYSAILSGCIRGALEMVQLEVQCWFVQ DQLKGDNVTELRVKFVRRLEEVIPAGED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24668-PA | 171 | GF24668-PA | 1..171 | 8..178 | 860 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14039-PA | 150 | GG14039-PA | 1..150 | 29..178 | 796 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15529-PA | 170 | GH15529-PA | 5..170 | 13..178 | 841 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Bet3-PA | 178 | CG3911-PA | 1..178 | 1..178 | 907 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16806-PA | 174 | GI16806-PA | 10..174 | 14..178 | 831 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17970-PA | 178 | GL17970-PA | 1..178 | 1..178 | 911 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28353-PA | 169 | GA28353-PA | 5..169 | 14..178 | 847 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24872-PA | 178 | GM24872-PA | 1..178 | 1..178 | 941 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12923-PA | 178 | GD12923-PA | 1..178 | 1..178 | 941 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12552-PA | 167 | GJ12552-PA | 3..167 | 14..178 | 846 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16614-PA | 178 | GK16614-PA | 1..178 | 1..178 | 919 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21242-PA | 150 | GE21242-PA | 1..150 | 29..178 | 796 | 100 | Plus |
Translation from 91 to 627
> RE68712.hyp MSRQASRLDAKKVNSEFLTLTYGALVTQMLRDFENAEDVNKQLERIGYNM GMRLIEDFLARTSAPRCLEMRETADRIQQAFRIYLNIQPTISNWSPASDE FSLVFDSNPLTEFVELPPDLTNLRYSAILSGCIRGALEMVQLEVQCWFVQ DQLKGDNVTELRVKFVRRLEEVIPAGED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Bet3-PA | 178 | CG3911-PA | 1..178 | 1..178 | 907 | 100 | Plus |