Clone RE68908 Report

Search the DGRC for RE68908

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:689
Well:8
Vector:pFlc-1
Associated Gene/TranscriptAdk1-RB
Protein status:RE68908.pep: gold
Sequenced Size:1122

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17146 2004-03-31 Blastp of sequenced clone
Adk1 2008-04-29 Release 5.5 accounting
Adk1 2008-08-15 Release 5.9 accounting
Adk1 2008-12-18 5.12 accounting

Clone Sequence Records

RE68908.complete Sequence

1122 bp (1122 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012445

> RE68908.complete
AGTCACTCTCAACTCACGCAGCACAGAGGGTGGGTGGAAAACAGTCGGGC
GGAGCATTCGAGAATCTGGGCGAGAATCGACCGACCAAGTGGCGCTAAGG
GAAGGCTAGTAAGGCATCCGGCTAACAAACTACCGAATATTTCGCGATTT
CTTCAGCGAAAGGCCCGCAGCAGCGACGTGTATATCTAGTATACATCATC
ATCATCATGTTATTTATGTGTCACCAAAGGGTTATGAAGAAGGAGGCCGA
GGAGAAGCTCAAAGCCGAGGAGCTCCGTAGGGCACGTGCCGCCGCTGATA
TACCCATCATCTGGATCTTGGGTGGACCCGGGTGCGGCAAGGGCACTCAG
TGCGCCAAAATCGTGGAAAAATACGGATTCACACATCTGAGCAGCGGCGA
TTTGCTGCGCAATGAGGTGGCTTCTGGATCGGACAAGGGTCGTCAGCTGC
AGGCTGTGATGGCCAGCGGTGGCCTGGTGTCCAACGACGAGGTGCTGTCC
CTGCTGAACGACGCCATCACGCGGGCCAAGGGTAGCTCGAAGGGATTCCT
CATCGATGGATATCCGCGTCAGAAGAACCAGGGCATTGAGTTCGAGGCGC
GCATTGCACCCGCCGATCTGGCGCTGTACTTTGAGTGCTCCGAGGACACG
ATGGTGCAGCGCATCATGGCACGTGCCGCTGCCTCGGCGGTGAAACGGGA
CGATGACAACGAGAAGACCATTAGGGCACGCCTCCTGACCTTCAAGCAGA
ACACCAATGCAATTTTGGAACTTTATGAGCCCAAAACCCTTACGATCAAT
GCCGAGCGTGACGTGGACGACATCTTTCTGGAAGTCGTCCAGGCCATTGA
CTGTGTGCTGAAGAAGAAGCAGCAGAATGCCGCCGCCCAGTGCTAGTAGA
ATGCTAATCCATTAGGAAACCGGTACCAAAGTCAACATTTCTAGTGCACT
TTTTAGCGCGAAACACACAATCTCAGAGCTGAGCACAAATGAATGCGAAA
CACCAAATAAATTAGTCTAAATCTATGTTATGTTATGTTATGGCATTATC
CTTTAATTCGTGACAAGCAATAATTGATCTAGTGCTTTAAATAAATTTAC
ACATACAAAAAAAAAAAAAAAA

RE68908.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-RB 1541 Adk1-RB 294..1402 1..1109 5545 100 Plus
Adk1-RA 1457 Adk1-RA 503..1318 294..1109 4080 100 Plus
Adk1.a 1019 Adk1.a 114..929 294..1109 4080 100 Plus
Adk1-RA 1457 Adk1-RA 294..502 1..209 1045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12191447..12191826 794..415 1900 100 Minus
chr3L 24539361 chr3L 12191062..12191374 1106..794 1535 99.4 Minus
chr3L 24539361 chr3L 12194463..12194671 209..1 1045 100 Minus
chr3L 24539361 chr3L 12192107..12192231 418..294 625 100 Minus
chr3L 24539361 chr3L 12192514..12192599 294..209 430 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:13:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12200712..12201091 794..415 1900 100 Minus
3L 28110227 3L 12200324..12200639 1109..794 1580 100 Minus
3L 28110227 3L 12203719..12203927 209..1 1045 100 Minus
3L 28110227 3L 12201372..12201496 418..294 625 100 Minus
3L 28110227 3L 12201778..12201863 294..209 430 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12193812..12194191 794..415 1900 100 Minus
3L 28103327 3L 12193424..12193739 1109..794 1580 100 Minus
3L 28103327 3L 12196819..12197027 209..1 1045 100 Minus
3L 28103327 3L 12194472..12194596 418..294 625 100 Minus
3L 28103327 3L 12194878..12194963 294..209 430 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:21:24 has no hits.

RE68908.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:22:12 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12191062..12191373 795..1106 99 <- Minus
chr3L 12191447..12191824 417..794 100 <- Minus
chr3L 12192109..12192231 294..416 100 <- Minus
chr3L 12192515..12192598 210..293 100 <- Minus
chr3L 12194463..12194671 1..209 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:47 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 1..690 207..896 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:23 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 1..690 207..896 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:12 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 1..690 207..896 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:12 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 1..690 207..896 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:52 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 1..690 207..896 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:45:01 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 156..1192 1..1037 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:23 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 156..1192 1..1037 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:12 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 156..1261 1..1106 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:12 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 156..1192 1..1037 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:52 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 156..1261 1..1106 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:22:12 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12200327..12200638 795..1106 100 <- Minus
3L 12200712..12201089 417..794 100 <- Minus
3L 12201374..12201496 294..416 100 <- Minus
3L 12201779..12201862 210..293 100 <- Minus
3L 12203719..12203927 1..209 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:22:12 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12200327..12200638 795..1106 100 <- Minus
3L 12200712..12201089 417..794 100 <- Minus
3L 12201374..12201496 294..416 100 <- Minus
3L 12201779..12201862 210..293 100 <- Minus
3L 12203719..12203927 1..209 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:22:12 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12200327..12200638 795..1106 100 <- Minus
3L 12200712..12201089 417..794 100 <- Minus
3L 12201374..12201496 294..416 100 <- Minus
3L 12201779..12201862 210..293 100 <- Minus
3L 12203719..12203927 1..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:12 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12193427..12193738 795..1106 100 <- Minus
arm_3L 12193812..12194189 417..794 100 <- Minus
arm_3L 12194474..12194596 294..416 100 <- Minus
arm_3L 12194879..12194962 210..293 100 <- Minus
arm_3L 12196819..12197027 1..209 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:35 Download gff for RE68908.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12193427..12193738 795..1106 100 <- Minus
3L 12193812..12194189 417..794 100 <- Minus
3L 12194474..12194596 294..416 100 <- Minus
3L 12194879..12194962 210..293 100 <- Minus
3L 12196819..12197027 1..209 100   Minus

RE68908.pep Sequence

Translation from 206 to 895

> RE68908.pep
MLFMCHQRVMKKEAEEKLKAEELRRARAAADIPIIWILGGPGCGKGTQCA
KIVEKYGFTHLSSGDLLRNEVASGSDKGRQLQAVMASGGLVSNDEVLSLL
NDAITRAKGSSKGFLIDGYPRQKNQGIEFEARIAPADLALYFECSEDTMV
QRIMARAAASAVKRDDDNEKTIRARLLTFKQNTNAILELYEPKTLTINAE
RDVDDIFLEVVQAIDCVLKKKQQNAAAQC*

RE68908.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24995-PA 223 GF24995-PA 3..223 10..229 956 85.5 Plus
Dana\GF18220-PA 196 GF18220-PA 8..187 34..210 296 36.6 Plus
Dana\GF24994-PA 555 GF24994-PA 345..550 3..223 257 26.2 Plus
Dana\GF12891-PA 240 GF12891-PA 23..234 37..222 243 29 Plus
Dana\GF18267-PA 218 GF18267-PA 10..186 37..191 196 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13846-PA 219 GG13846-PA 15..219 24..229 1034 95.1 Plus
Dere\GG12202-PA 196 GG12202-PA 8..187 34..210 289 36.1 Plus
Dere\GG13845-PA 555 GG13845-PA 355..550 17..223 265 28.7 Plus
Dere\GG22922-PA 240 GG22922-PA 23..234 37..222 243 29 Plus
Dere\GG17252-PA 216 GG17252-PA 10..191 37..196 165 24.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15260-PA 222 GH15260-PA 17..221 23..227 826 80.5 Plus
Dgri\GH18143-PA 197 GH18143-PA 8..187 34..210 274 35.5 Plus
Dgri\GH21708-PA 238 GH21708-PA 23..238 37..225 249 30.3 Plus
Dgri\GH19429-PA 217 GH19429-PA 10..126 37..156 198 35 Plus
Dgri\GH25120-PA 972 GH25120-PA 687..834 33..188 168 31.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-PB 229 CG17146-PB 1..229 1..229 1157 100 Plus
Adk1-PA 201 CG17146-PA 2..201 30..229 1013 100 Plus
Dak1-PA 253 CG6092-PA 65..244 34..210 288 36.6 Plus
Adk2-PA 240 CG3140-PA 23..234 37..222 238 29 Plus
CG9541-PC 616 CG9541-PC 328..491 33..204 165 28.4 Plus
CG9541-PD 646 CG9541-PD 358..521 33..204 165 28.4 Plus
Adk3-PD 216 CG6612-PD 10..190 37..195 154 23.4 Plus
Adk3-PC 216 CG6612-PC 10..190 37..195 154 23.4 Plus
Adk3-PA 216 CG6612-PA 10..190 37..195 154 23.4 Plus
Adk3-PB 216 CG6612-PB 10..190 37..195 154 23.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11969-PA 225 GI11969-PA 1..222 4..225 943 77.9 Plus
Dmoj\GI22905-PA 197 GI22905-PA 2..187 28..210 305 36 Plus
Dmoj\GI20701-PA 240 GI20701-PA 23..232 37..220 247 29.8 Plus
Dmoj\GI22633-PA 217 GI22633-PA 10..206 37..210 203 26.5 Plus
Dmoj\GI12486-PA 224 GI12486-PA 1..175 38..190 173 24.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25010-PA 225 GL25010-PA 3..223 10..226 955 85.5 Plus
Dper\GL12997-PA 193 GL12997-PA 5..189 29..210 302 35.6 Plus
Dper\GL22014-PA 249 GL22014-PA 61..240 34..210 284 35.3 Plus
Dper\GL25009-PA 539 GL25009-PA 370..531 30..221 250 28.1 Plus
Dper\GL11651-PA 222 GL11651-PA 5..205 37..207 246 30.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14347-PA 229 GA14347-PA 1..227 4..226 976 84.1 Plus
Dpse\GA23172-PA 198 GA23172-PA 5..193 29..214 296 35.4 Plus
Dpse\GA19345-PA 249 GA19345-PA 61..240 34..210 283 35.3 Plus
Dpse\GA16231-PA 240 GA16231-PA 23..223 37..207 246 30.7 Plus
Dpse\GA19014-PA 539 GA19014-PA 370..531 30..221 244 27.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24672-PA 220 GM24672-PA 1..220 10..229 1146 98.6 Plus
Dsec\GM10200-PA 253 GM10200-PA 65..244 34..210 300 36.1 Plus
Dsec\GM18289-PA 240 GM18289-PA 23..234 37..222 239 28.6 Plus
Dsec\GM16084-PA 240 GM16084-PA 23..234 37..222 239 28.6 Plus
Dsec\GM24671-PA 507 GM24671-PA 345..458 3..120 228 35.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12741-PA 206 GD12741-PA 1..188 10..197 979 98.4 Plus
Dsim\GD18150-PA 253 GD18150-PA 65..244 34..210 299 36.1 Plus
Dsim\GD12739-PA 188 GD12739-PA 2..183 29..223 242 27.7 Plus
Dsim\GD11825-PA 240 GD11825-PA 23..234 37..222 239 28.6 Plus
Dsim\GD20690-PA 209 GD20690-PA 10..184 37..196 153 23 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12193-PA 225 GJ12193-PA 1..222 4..225 980 81.5 Plus
Dvir\GJ23317-PA 197 GJ23317-PA 8..187 34..210 316 39.3 Plus
Dvir\GJ12192-PA 561 GJ12192-PA 352..552 3..220 265 28.9 Plus
Dvir\GJ20444-PA 240 GJ20444-PA 23..233 37..221 243 29.2 Plus
Dvir\GJ23879-PA 217 GJ23879-PA 10..206 37..210 203 26.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13248-PA 219 GK13248-PA 3..219 10..226 907 79.7 Plus
Dwil\GK12802-PA 196 GK12802-PA 8..187 34..210 315 38.8 Plus
Dwil\GK21378-PA 240 GK21378-PA 23..236 37..224 243 28.3 Plus
Dwil\GK13237-PA 262 GK13237-PA 169..262 25..118 228 41.5 Plus
Dwil\GK13283-PA 217 GK13283-PA 10..126 37..156 193 33.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20139-PA 225 GE20139-PA 1..225 4..229 1071 95.6 Plus
Dyak\GE10646-PA 196 GE10646-PA 8..187 34..210 296 36.1 Plus
Dyak\GE20138-PA 524 GE20138-PA 324..519 17..223 256 27.3 Plus
Dyak\GE14359-PA 240 GE14359-PA 23..234 37..222 237 28.6 Plus
Dyak\GE24653-PA 216 GE24653-PA 10..193 37..198 178 25.1 Plus

RE68908.hyp Sequence

Translation from 206 to 895

> RE68908.hyp
MLFMCHQRVMKKEAEEKLKAEELRRARAAADIPIIWILGGPGCGKGTQCA
KIVEKYGFTHLSSGDLLRNEVASGSDKGRQLQAVMASGGLVSNDEVLSLL
NDAITRAKGSSKGFLIDGYPRQKNQGIEFEARIAPADLALYFECSEDTMV
QRIMARAAASAVKRDDDNEKTIRARLLTFKQNTNAILELYEPKTLTINAE
RDVDDIFLEVVQAIDCVLKKKQQNAAAQC*

RE68908.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-PB 229 CG17146-PB 1..229 1..229 1157 100 Plus
Adk1-PA 201 CG17146-PA 2..201 30..229 1013 100 Plus
Dak1-PA 253 CG6092-PA 65..244 34..210 288 36.6 Plus
Adk2-PA 240 CG3140-PA 23..234 37..222 238 29 Plus
CG9541-PC 616 CG9541-PC 328..491 33..204 165 28.4 Plus