BDGP Sequence Production Resources |
Search the DGRC for RE69123
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 691 |
Well: | 23 |
Vector: | pFlc-1 |
Associated Gene/Transcript | fax-RD |
Protein status: | RE69123.pep: gold |
Sequenced Size: | 2505 |
Gene | Date | Evidence |
---|---|---|
fax-RB | 2009-06-22 | Replacement based on scoring |
2505 bp assembled on 2009-08-15
GenBank Submission: BT099606.1
> RE69123.complete ACTCTCTCGCCGATTCTCTCTCGGCTCTGGCGGACAACCACACCCTGCCT CTCCCTTTTTTGGCAGAGGGCGCGAAAGCATAAAATATGCCAACGGTTGG CTCTTTGTTATGGCCCTCAATGTCGATCATAAGATGCGTTTCCGCTCCAA GAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGGAGGAAATCGCCGATT CGGCCATCATCATCAAGGAACTGTCGTCCAAATACGAGAAGTACCTGGAC TCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTACGCCACGATTGCCAT GCTGGAGAACCATCTCATCTGGATCATCTTCTACTGGCGCGCCAAGTATC CGGACAATGTGCTCAAGGGCTACAAGGTCAACTTGCAGCACGCCCTCGGC CTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTTTAAGATCACCTTTGG TCGCAAGGGCACGAAGAAGCTGAAGGCGCACGGCATCGGTGTCCACAGCG CCGAGGAGATCGAGGAGTTCGGCAAGGACGACCTGAAGGTGCTCAGCGAG ATGCTCGACTGCAAGCCTTTCTTCTTCGGCGACGAGCCCACCACCCTGGA TGTGGTGGCCTTCGCTGTCCTCTCGCAGCTCCACTATCTGTCCAAGGACA TTGCGTATCCGCTGCGCGACTACATGACCGAGAAGTGCCCCAACTTGATT GGCCACGTATCTCGCATGAAGGACAAGTGCTTCCCCGACTGGGACGAGAT CTGCACGAAGCTGGACCTCAATGCGCACATTCCCAAGCCAGAGCCCGAGA CCAAGGAGGGCAAGGAGGGTGGCGAGCAGGAGAAATCAAACGAACAGGAG GGCACTGAGGGCGACAAGATCGAGAAGGAGTTGGAGAAGGACAAGTCAAA CGAGAAGGAGTCGACCGAGGAGAACAAAGAGAAGGAGGAAACAAAGTAAA TTCGCCGTTAGTTATATGCGTACATATATCTAGTATATGTGTATGATCGA AGGAAACAGAAACACCCACATACACACACATTATATATATATACATATGT AGTACGATACTATATAGTAAGGCCCTATATAGCTAGGCGCTACGCTCTCA TATATAAGCATTCAGACATCAGAAAACCACTCGAAAAACAAAAACGAAAA AAAACATCAAGAACACCCATTTACAAACCTAGGACAACTGTAAAGCAAAA GCAGGCAAAAACCATCAGCAAGAGAACGATCCACTAAGTAATGAGAAAAA AAACAAAAAGCATATACAATAACGTAACGTAAAACTTTGGACATCTTTTT TTATATATTTACATGACGACGTTTGTATTACAAGAACAAGAAACAAAAAG CAAAAAAAAGTGAAGAAAACGTAAAAAAAAAACCGTAAAAACCATTTAGT ATAAAATTATAAAAGTTTATACGTATAAATATTAAGACGATGAATGAAAG CGATGAGAGCGGGGGGAGAAATTATAAAAAATTAGTTAAAGAACGCGAAT AAAACAAAGAACAAGTGAGCAAAACGTGAGTAAAAAGAGTGAAGCCAGAT AGGACGAAAAGTTAGCGAGGTGTAGAACAGCATTCAATACGCATTAATCA TTAGTTTTCATTCAAAAGCGATCTATATAATACACTCATCGACACTCACA CTCACTCTCACACACACTCAACAAAAAACACAACACAAAACAACACACTC TACACACATATAGCATATGCAGCAACAATTGCAACTCGATGGTATTGTTT ACTCTTCCAAAATTGATTAAGCTTAAAGTAACGAAAGTAACGAAAGGAAC CGCTACCAGTACGATAGGAAGATACGATAGTGATGGTTAGTAGGGATGGC ATGCAATGGGGATGAGAATGCAAATGCAAATGCGAATGCGAATGGTATAG GAATGATATAACGGAATGACGGCAATTAAGTTTATTTTTTATATATATAT GATTGCAAATAGTAATTTTGATTCTCGTGTGCAAATAATTAAACAAAATG GATAAAATTTATTACTTATAATTATATACATAAACATTATATACGCCCAT TATGCATAAAGATGTGTATAAAAAAAAACAAAGCAAAACAAAACAAAACA AAAACGACAAAGCATAAAAACTGTATGTTGGTTCTTTTATTATATTATAC TTTATTTCTATAAATATTATTGTAATTGTACTGTGTATTATGATTTTGCT AACCAAAATCCCTTAGTATGAGATGCTCATCGATATTTCACCCCCATACA CAAAATCAAATCAATTCGAACCAAAAAGAATACTCGGCCATCCAAACGAA CAAAATTTACCATTTATTTTGTACGCAATTGTAACTACTTTTATATGTAT GTACATATGTATGTACATTCTCTATTTTGGTACGTCCACTGAAACAAAAT TATAGTACGCCTCATTTGATTTTTCAACTGTCTTGTGTTTCATACGATTT AATTTAATGATATTGATTATGCAAATATATATATAAATATAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fax-RD | 2779 | fax-RD | 1..2491 | 1..2493 | 12385 | 99.9 | Plus |
fax-RB | 2788 | fax-RB | 465..2500 | 456..2493 | 10110 | 99.9 | Plus |
fax-RA | 3809 | fax-RA | 1485..3520 | 456..2493 | 10110 | 99.9 | Plus |
fax-RB | 2788 | fax-RB | 1..457 | 1..457 | 2285 | 100 | Plus |
fax-RA | 3809 | fax-RA | 1139..1477 | 119..457 | 1695 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16393360..16394954 | 2490..894 | 7760 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 16395283..16395620 | 793..456 | 1690 | 100 | Minus |
chr3L | 24539361 | chr3L | 16396803..16397142 | 458..119 | 1670 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 16398111..16398228 | 118..1 | 590 | 100 | Minus |
chr3L | 24539361 | chr3L | 16395108..16395210 | 895..793 | 515 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16403575..16405172 | 2493..894 | 7900 | 99.9 | Minus |
3L | 28110227 | 3L | 16407020..16407359 | 458..119 | 1700 | 100 | Minus |
3L | 28110227 | 3L | 16405501..16405838 | 793..456 | 1690 | 100 | Minus |
3L | 28110227 | 3L | 16408328..16408445 | 118..1 | 590 | 100 | Minus |
3L | 28110227 | 3L | 16405326..16405428 | 895..793 | 515 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16396675..16398272 | 2493..894 | 7920 | 99.8 | Minus |
3L | 28103327 | 3L | 16400120..16400459 | 458..119 | 1700 | 100 | Minus |
3L | 28103327 | 3L | 16398601..16398938 | 793..456 | 1690 | 100 | Minus |
3L | 28103327 | 3L | 16401428..16401545 | 118..1 | 590 | 100 | Minus |
3L | 28103327 | 3L | 16398426..16398528 | 895..793 | 515 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1259..1588 | 1971..2320 | 147 | 54.4 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3800..3942 | 2071..1931 | 124 | 58.9 | Minus |
Juan | 4236 | Juan JUAN 4236bp | 3918..4039 | 2364..2250 | 124 | 61.8 | Minus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 139..211 | 2004..2075 | 119 | 64.4 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 140..212 | 2004..2075 | 119 | 64.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16393360..16394952 | 896..2490 | 99 | <- | Minus |
chr3L | 16395108..16395210 | 793..895 | 100 | <- | Minus |
chr3L | 16395284..16395618 | 458..792 | 100 | <- | Minus |
chr3L | 16396804..16397142 | 119..457 | 99 | <- | Minus |
chr3L | 16398111..16398228 | 1..118 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RD | 1..840 | 110..949 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RD | 1..840 | 110..949 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RD | 1..840 | 110..949 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RD | 1..840 | 110..949 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RD | 1..2488 | 1..2490 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RD | 1..2488 | 1..2490 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RD | 1..2488 | 1..2490 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RD | 5..2492 | 1..2490 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16405502..16405836 | 458..792 | 100 | <- | Minus |
3L | 16403578..16405170 | 896..2490 | 99 | <- | Minus |
3L | 16407021..16407359 | 119..457 | 100 | <- | Minus |
3L | 16408328..16408445 | 1..118 | 100 | Minus | |
3L | 16405326..16405428 | 793..895 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16405502..16405836 | 458..792 | 100 | <- | Minus |
3L | 16403578..16405170 | 896..2490 | 99 | <- | Minus |
3L | 16407021..16407359 | 119..457 | 100 | <- | Minus |
3L | 16408328..16408445 | 1..118 | 100 | Minus | |
3L | 16405326..16405428 | 793..895 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16405502..16405836 | 458..792 | 100 | <- | Minus |
3L | 16403578..16405170 | 896..2490 | 99 | <- | Minus |
3L | 16407021..16407359 | 119..457 | 100 | <- | Minus |
3L | 16408328..16408445 | 1..118 | 100 | Minus | |
3L | 16405326..16405428 | 793..895 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16396678..16398270 | 896..2490 | 99 | <- | Minus |
arm_3L | 16398426..16398528 | 793..895 | 100 | <- | Minus |
arm_3L | 16398602..16398936 | 458..792 | 100 | <- | Minus |
arm_3L | 16400121..16400459 | 119..457 | 100 | <- | Minus |
arm_3L | 16401428..16401545 | 1..118 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16398426..16398528 | 793..895 | 100 | <- | Minus |
3L | 16396678..16398270 | 896..2490 | 99 | <- | Minus |
3L | 16398602..16398936 | 458..792 | 100 | <- | Minus |
3L | 16400121..16400459 | 119..457 | 100 | <- | Minus |
3L | 16401428..16401545 | 1..118 | 100 | Minus |
Translation from 0 to 948
> RE69123.hyp LSRRFSLGSGGQPHPASPFFGRGRESIKYANGWLFVMALNVDHKMRFRSK KGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGLTAEQRNVSYATIAM LENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFG RKGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEPTTLD VVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDWDEI CTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKDKSN EKESTEENKEKEETK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fax-PD | 279 | CG4609-PD | 1..279 | 37..315 | 1469 | 100 | Plus |
fax-PC | 415 | CG4609-PC | 130..415 | 33..315 | 1460 | 97.6 | Plus |
fax-PB | 282 | CG4609-PB | 1..282 | 37..315 | 1455 | 98.9 | Plus |
fax-PA | 418 | CG4609-PA | 130..418 | 33..315 | 1446 | 96.5 | Plus |
fax-PE | 271 | CG4609-PE | 1..271 | 45..315 | 1427 | 100 | Plus |
Translation from 1 to 948
> RE69123.pep LSRRFSLGSGGQPHPASPFFGRGRESIKYANGWLFVMALNVDHKMRFRSK KGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGLTAEQRNVSYATIAM LENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFG RKGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEPTTLD VVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDWDEI CTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKDKSN EKESTEENKEKEETK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10211-PA | 415 | GF10211-PA | 127..415 | 33..315 | 1443 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13452-PA | 418 | GG13452-PA | 130..418 | 33..315 | 1452 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15590-PA | 441 | GH15590-PA | 153..426 | 33..300 | 1358 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fax-PD | 279 | CG4609-PD | 1..279 | 37..315 | 1469 | 100 | Plus |
fax-PC | 415 | CG4609-PC | 130..415 | 33..315 | 1460 | 97.6 | Plus |
fax-PB | 282 | CG4609-PB | 1..282 | 37..315 | 1455 | 98.9 | Plus |
fax-PA | 418 | CG4609-PA | 130..418 | 33..315 | 1446 | 96.5 | Plus |
fax-PE | 271 | CG4609-PE | 1..271 | 45..315 | 1427 | 100 | Plus |
fax-PF | 274 | CG4609-PF | 1..274 | 45..315 | 1413 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16867-PA | 426 | GI16867-PA | 138..411 | 33..300 | 1358 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17995-PA | 419 | GL17995-PA | 134..419 | 33..315 | 1466 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18298-PA | 419 | GA18298-PA | 134..419 | 33..315 | 1466 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24402-PA | 415 | GM24402-PA | 130..415 | 33..315 | 1480 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12471-PA | 415 | GD12471-PA | 130..415 | 33..315 | 1481 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\fax-PA | 425 | GJ12617-PA | 137..425 | 33..315 | 1452 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17490-PA | 434 | GK17490-PA | 146..434 | 33..315 | 1450 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22555-PA | 418 | GE22555-PA | 130..418 | 33..315 | 1451 | 95.8 | Plus |