Clone RE69176 Report

Search the DGRC for RE69176

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:691
Well:76
Vector:pFlc-1
Associated Gene/TranscriptlambdaTry-RA
Protein status:RE69176.pep: gold
Preliminary Size:819
Sequenced Size:960

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12350 2001-12-13 Blastp of sequenced clone
CG12350 2002-01-01 Sim4 clustering to Release 2
CG12350 2003-01-01 Sim4 clustering to Release 3
lambdaTry 2008-04-29 Release 5.5 accounting
lambdaTry 2008-08-15 Release 5.9 accounting
lambdaTry 2008-12-18 5.12 accounting

Clone Sequence Records

RE69176.complete Sequence

960 bp (960 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070589

> RE69176.complete
AGTTGCTCGAAAATGTCACGGATTTTGGTTGTGTTTCTGGTGCTCGGAGT
GGGCTGCTCCCTGGCAGATCCTATATACCGGAACGAAGAGGTTCATATAC
CGAAGCTCGATGGACGCATTGTCGGTGGACAGGACACGAACATCACCCAA
TATCCGCATCAGATCTCGATGAGGTATAGAGGAAATCACCGATGCGGAGG
CACAATTTACAGATCAAACCAGATCATCAGTGCTGCCCATTGTGTAAACA
CCTTGTCCGGCCCGGAAAACCTTACCATTGTGGCTGGTTCCTCGAACATC
TGGTTCCCCACGGGTCCGCAGCAGGAGTTGGAAGTCCGTGAGATCATCAT
TCATCCCAAGTATCGCACTCTGAACAACGACTACGATGCGGCAATTCTGA
TCCTGGATGGGGATTTCGAGTTCAACGACGCCGTGCAGCCGATTGAGTTG
GCCAAGGAGCGGCCCGATCATGATACACCCGTTACCGTGACGGGCTGGGG
AACCACCAGCGAAGGCGGAACCATCTCCGACGTCCTGCAGGAGGTCAGCG
TTAATGTGGTGGACAACTCGAACTGCAAGAACGCCTATTCCATTATGCTG
ACCAGTCGTATGCTTTGCGCCGGAGTCAACGGAGGTGGAAAGGATGCATG
CCAGGGAGATTCCGGTGGTCCGCTGGTCTACAACAACACACTCCTGGGCA
TTGTGTCCTGGGGAACGGGCTGTGCCCGTGAGAAATATCCCGGAGTCTAT
TGCTCCGTACCGGATGTTCTCGATTGGCTGGTGGAGACCGTTGCGGATAA
AGAGAGTGTGGGCAAAATCGACTTTCTGTAATAATATTAAGGCAAAAATA
CTATTCAAACGTCTTGTAACTAGCCTCAATCAACTCAAAACCTTTTATAT
CTTCGAATTACGTAAGAAATGACCAATACAGACGATAACGTAGTAAAAAA
AAAAAAAAAA

RE69176.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
lambdaTry-RA 944 lambdaTry-RA 1..944 1..944 4720 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7224303..7225246 1..944 4720 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:13:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11336848..11337792 1..945 4725 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11338047..11338991 1..945 4725 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:37:57 has no hits.

RE69176.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:38:58 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7224303..7225246 1..944 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:33:56 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
lambdaTry-RA 1..819 13..831 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:15:08 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
lambdaTry-RA 1..819 13..831 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:21:46 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
lambdaTry-RA 1..819 13..831 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:40:20 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
lambdaTry-RA 1..819 13..831 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:13 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
lambdaTry-RA 1..819 13..831 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:46:53 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
lambdaTry-RA 1..944 1..944 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:15:08 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
lambdaTry-RA 1..944 1..944 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:21:46 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
lambdaTry-RA 9..952 1..944 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:40:21 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
lambdaTry-RA 1..944 1..944 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:13 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
lambdaTry-RA 9..952 1..944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:58 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11336848..11337791 1..944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:58 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11336848..11337791 1..944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:58 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11336848..11337791 1..944 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:21:46 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7224353..7225296 1..944 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:17:10 Download gff for RE69176.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11338047..11338990 1..944 100   Plus

RE69176.hyp Sequence

Translation from 0 to 830

> RE69176.hyp
SCSKMSRILVVFLVLGVGCSLADPIYRNEEVHIPKLDGRIVGGQDTNITQ
YPHQISMRYRGNHRCGGTIYRSNQIISAAHCVNTLSGPENLTIVAGSSNI
WFPTGPQQELEVREIIIHPKYRTLNNDYDAAILILDGDFEFNDAVQPIEL
AKERPDHDTPVTVTGWGTTSEGGTISDVLQEVSVNVVDNSNCKNAYSIML
TSRMLCAGVNGGGKDACQGDSGGPLVYNNTLLGIVSWGTGCAREKYPGVY
CSVPDVLDWLVETVADKESVGKIDFL*

RE69176.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
lambdaTry-PA 272 CG12350-PA 1..272 5..276 1449 100 Plus
gammaTry-PA 253 CG30028-PA 5..250 11..261 468 42 Plus
deltaTry-PA 253 CG12351-PA 5..250 11..261 468 42 Plus
CG30031-PA 253 CG30031-PA 5..250 11..261 468 42 Plus
CG30025-PA 253 CG30025-PA 5..250 11..261 468 42 Plus

RE69176.pep Sequence

Translation from 12 to 830

> RE69176.pep
MSRILVVFLVLGVGCSLADPIYRNEEVHIPKLDGRIVGGQDTNITQYPHQ
ISMRYRGNHRCGGTIYRSNQIISAAHCVNTLSGPENLTIVAGSSNIWFPT
GPQQELEVREIIIHPKYRTLNNDYDAAILILDGDFEFNDAVQPIELAKER
PDHDTPVTVTGWGTTSEGGTISDVLQEVSVNVVDNSNCKNAYSIMLTSRM
LCAGVNGGGKDACQGDSGGPLVYNNTLLGIVSWGTGCAREKYPGVYCSVP
DVLDWLVETVADKESVGKIDFL*

RE69176.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12545-PA 273 GF12545-PA 1..273 1..272 1096 75.8 Plus
Dana\GF12402-PA 256 GF12402-PA 1..255 1..262 453 38.7 Plus
Dana\GF12406-PA 285 GF12406-PA 1..278 1..262 451 40.6 Plus
Dana\GF12546-PA 256 GF12546-PA 5..253 7..260 420 40.7 Plus
Dana\GF14668-PA 279 GF14668-PA 16..275 8..258 419 37.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20193-PA 273 GG20193-PA 17..273 16..272 1242 89.5 Plus
Dere\epsilonTry-PA 256 GG22660-PA 1..255 1..262 441 39.6 Plus
Dere\etaTry-PA 258 GG22663-PA 25..258 33..260 415 43.9 Plus
Dere\betaTry-PA 253 GG20194-PA 5..251 7..258 414 41 Plus
Dere\gammaTry-PA 253 GG22658-PA 5..251 7..258 412 42.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22923-PA 266 GH22923-PA 25..266 29..272 952 73.4 Plus
Dgri\GH22866-PA 255 GH22866-PA 5..254 7..262 452 39.5 Plus
Dgri\GH22924-PA 256 GH22924-PA 1..251 1..258 439 38.5 Plus
Dgri\GH22926-PA 256 GH22926-PA 5..251 7..258 434 39.5 Plus
Dgri\GH22925-PA 254 GH22925-PA 5..251 7..258 428 39.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
lambdaTry-PA 272 CG12350-PA 1..272 1..272 1449 100 Plus
gammaTry-PA 253 CG30028-PA 5..250 7..257 468 42 Plus
CG30025-PA 253 CG30025-PA 5..250 7..257 468 42 Plus
deltaTry-PA 253 CG12351-PA 5..250 7..257 468 42 Plus
CG30031-PA 253 CG30031-PA 5..250 7..257 468 42 Plus
alphaTry-PA 256 CG18444-PA 4..252 6..259 460 39.5 Plus
zetaTry-PA 280 CG12387-PA 9..278 5..261 456 41.9 Plus
betaTry-PB 253 CG18211-PB 1..250 5..257 451 40.5 Plus
betaTry-PA 253 CG18211-PA 1..250 5..257 451 40.5 Plus
epsilonTry-PA 256 CG18681-PA 1..255 1..262 441 38.3 Plus
etaTry-PA 262 CG12386-PA 7..256 3..258 441 39.6 Plus
Try29F-PD 267 CG9564-PD 33..261 27..256 417 41.5 Plus
Try29F-PC 267 CG9564-PC 33..261 27..256 417 41.5 Plus
CG11192-PB 279 CG11192-PB 25..261 33..258 410 38.4 Plus
Ser8-PA 260 CG4812-PA 1..255 1..258 409 36 Plus
CG13430-PB 267 CG13430-PB 29..265 33..262 408 40.9 Plus
CG13430-PA 267 CG13430-PA 29..265 33..262 408 40.9 Plus
CG31954-PA 277 CG31954-PA 15..273 9..258 404 36.7 Plus
CG8299-PA 260 CG8299-PA 28..254 36..258 401 38.3 Plus
thetaTry-PA 262 CG12385-PA 1..256 1..257 398 36.9 Plus
Sb-PB 787 CG4316-PB 531..786 26..260 397 38.3 Plus
Sb-PA 787 CG4316-PA 531..786 26..260 397 38.3 Plus
CG4386-PA 372 CG4386-PA 120..354 29..256 396 37.3 Plus
CG18735-PA 364 CG18735-PA 82..317 35..262 394 38 Plus
kappaTry-PC 263 CG12388-PC 23..258 33..261 393 38.2 Plus
CG7829-PA 253 CG7829-PA 25..245 33..256 378 37.1 Plus
CG17571-PB 258 CG17571-PB 1..254 1..259 377 36.6 Plus
CG17571-PA 258 CG17571-PA 1..254 1..259 377 36.6 Plus
CG4914-PA 374 CG4914-PA 125..366 33..262 373 37.4 Plus
CG11836-PI 281 CG11836-PI 38..270 22..256 372 36.2 Plus
CG11836-PJ 333 CG11836-PJ 90..322 22..256 372 36.2 Plus
CG12951-PA 265 CG12951-PA 29..257 35..256 371 36.6 Plus
CG32269-PB 332 CG32269-PB 104..331 31..262 370 37 Plus
CG32269-PA 332 CG32269-PA 104..331 31..262 370 37 Plus
CG16749-PA 265 CG16749-PA 28..257 34..256 369 37.8 Plus
CG31681-PA 264 CG31681-PA 4..253 3..260 367 37.6 Plus
CG34458-PA 257 CG34458-PA 29..251 33..256 366 32.7 Plus
CG17239-PB 248 CG17239-PB 23..241 35..260 363 37.4 Plus
CG17239-PA 248 CG17239-PA 23..241 35..260 363 37.4 Plus
CG9676-PA 251 CG9676-PA 24..247 32..258 360 35.2 Plus
CG33159-PA 257 CG33159-PA 25..239 35..249 354 38.3 Plus
CG32755-PA 315 CG32755-PA 37..271 35..256 354 37.8 Plus
CG3355-PA 314 CG3355-PA 75..308 35..262 353 37.2 Plus
iotaTry-PA 252 CG7754-PA 26..247 34..258 352 36.7 Plus
CG6041-PA 308 CG6041-PA 30..271 31..258 348 33.7 Plus
CG32808-PA 284 CG32808-PA 27..259 33..260 347 35.2 Plus
CG32270-PA 259 CG32270-PA 30..255 35..260 346 36.2 Plus
CG32523-PA 262 CG32523-PA 8..258 5..258 339 33.2 Plus
CG8172-PD 371 CG8172-PD 125..368 35..262 337 34.5 Plus
CG8172-PE 545 CG8172-PE 299..542 35..262 337 34.5 Plus
Ser6-PA 259 CG2071-PA 27..253 31..256 327 34.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18412-PA 265 GI18412-PA 1..265 1..272 928 68 Plus
Dmoj\GI21243-PA 255 GI21243-PA 4..254 5..263 442 39.8 Plus
Dmoj\GI17455-PA 260 GI17455-PA 26..256 29..258 431 43.6 Plus
Dmoj\GI21250-PA 267 GI21250-PA 34..264 35..261 421 40.2 Plus
Dmoj\GI21247-PA 271 GI21247-PA 33..268 33..260 420 44.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17140-PA 237 GL17140-PA 11..237 43..272 900 72.6 Plus
Dper\GL17342-PA 280 GL17342-PA 35..280 35..266 450 42.5 Plus
Dper\GL17339-PA 256 GL17339-PA 5..251 7..258 436 40.2 Plus
Dper\GL17142-PA 256 GL17142-PA 5..253 7..260 434 40.3 Plus
Dper\GL17338-PA 256 GL17338-PA 5..255 7..262 431 37.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11574-PA 269 GA11574-PA 1..269 1..272 1051 72.4 Plus
Dpse\GA11599-PA 280 GA11599-PA 35..280 35..266 450 42.5 Plus
Dpse\GA15051-PA 256 GA15051-PA 2..255 4..262 444 37.6 Plus
Dpse\GA14937-PA 256 GA14937-PA 5..251 7..258 436 40.2 Plus
Dpse\GA24979-PA 256 GA24979-PA 5..253 7..260 434 40.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21281-PA 272 GM21281-PA 1..272 1..272 1353 94.1 Plus
Dsec\GM20443-PA 280 GM20443-PA 9..278 5..261 425 40.1 Plus
Dsec\GM17347-PA 258 GM17347-PA 5..252 4..256 417 40 Plus
Dsec\GM18144-PA 277 GM18144-PA 14..273 8..258 414 37 Plus
Dsec\GM19789-PA 279 GM19789-PA 25..263 33..260 413 39.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10792-PA 272 GD10792-PA 1..272 1..272 1394 97.1 Plus
Dsim\GD15391-PA 253 GD15391-PA 5..251 7..258 449 41.8 Plus
Dsim\GD25910-PA 280 GD25910-PA 9..278 5..261 445 41.2 Plus
Dsim\GD25909-PA 262 GD25909-PA 25..259 33..261 411 42.9 Plus
Dsim\GD25281-PA 279 GD25281-PA 25..263 33..260 411 39.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21494-PA 265 GJ21494-PA 1..265 1..272 972 66.9 Plus
Dvir\GJ20852-PA 267 GJ20852-PA 16..266 15..260 443 44 Plus
Dvir\GJ14373-PA 263 GJ14373-PA 8..258 4..257 438 40.7 Plus
Dvir\GJ17600-PA 276 GJ17600-PA 34..272 16..258 427 40.6 Plus
Dvir\GJ21498-PA 256 GJ21498-PA 11..250 13..257 425 40.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19691-PA 259 GK19691-PA 1..259 1..272 862 60.3 Plus
Dwil\GK21994-PA 256 GK21994-PA 4..255 5..263 435 38.8 Plus
Dwil\GK19332-PA 264 GK19332-PA 23..264 32..266 423 41.1 Plus
Dwil\GK19675-PA 256 GK19675-PA 5..253 7..260 419 39.9 Plus
Dwil\GK21995-PA 256 GK21995-PA 5..252 7..259 415 38.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12880-PA 272 GE12880-PA 1..272 1..272 1344 91.9 Plus
Dyak\epsilonTry-PA 256 GE13534-PA 1..255 1..262 441 39.6 Plus
Dyak\GE13533-PA 256 GE13533-PA 5..251 7..258 432 41.4 Plus
Dyak\GE12354-PA 256 GE12354-PA 5..251 7..258 432 41.4 Plus
Dyak\GE13537-PA 262 GE13537-PA 7..259 3..261 430 39.9 Plus