Clone RE69232 Report

Search the DGRC for RE69232

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:692
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG4623-RA
Protein status:RE69232.pep: gold
Preliminary Size:984
Sequenced Size:1609

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4623 2001-12-17 Blastp of sequenced clone
CG4623 2002-01-01 Sim4 clustering to Release 2
CG4623 2003-01-01 Sim4 clustering to Release 3
CG4623 2008-04-29 Release 5.5 accounting
CG4623 2008-08-15 Release 5.9 accounting
CG4623 2008-12-18 5.12 accounting

Clone Sequence Records

RE69232.complete Sequence

1609 bp (1609 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071643

> RE69232.complete
AAAAAGTTGGAGAATCGCTTGACATAATGGACTGTTTTCGGATCCGAAAC
ATATATATGTACTATATATATGTACATACGAGCCGAAAGTGCAAATTAAT
AGGGGATCGCAGCGATCCGTACGATCTGACTTCATTATAGACGCAGTCGT
CGGCGGAATCAGCACGCAAGTGGAGTCTCCGGTTTTCCAAGTCAATCCGG
CACGCGCTTACGGCTTTGTTAGTTAGCAACTTTTCGCAACCGTCGGCGGG
GCATGTGATACGAAAAAAGGCGCCCATGCTAGTGAAACTAATCAGCAAAC
TAAAGATACACTAAGCCAAAGAATATTAAGTGAAACACACATAGAACAAG
ATGAGCGAGCAGACAAAGGAAATCGAAGCTCTGCCGCCCACCTTGCAGGA
CTTCAAGGCTCCCGATCTGCCGGCCAATAAGCCAGTGCTCTTCTTCCATC
CGTACAACTTCCATGCGCAAAAAGTTCTTATGGTCTTCTACGAGAAGAAG
ATCGACTTCTTTCCCTATGTGGTGGACCTGTGCAATGGCGAGCAGTACTC
CAATTGGTTCCTAAACCTCAATCCCAAGGGCGATGTGCCAGTGCTCCAGG
ATGGCGCCCTCGTCATTCCCAGCTCGACGCACATCATCAACTATGTGGAG
AGCAAATTTCGCGGTGATCGATCGCTGAAGCCAGCGCACAACTCCAAGGA
ATTCGATCAAATGCTGATCTTCGAGCAGGCAATGGCCCGCCTTCCAGTGG
GAACACTCAGCCTGGGCTCCTTCATACACGACGATCTGAAGCTGGTGCCC
AAGGCGCCCTTCATCGGACCCGTGCGCCAGTCCTGCCTGAAAAACAATGA
AAAGGTGCTGGATCTGCTGCGCCACTCGGTGGACGAACAGGCGACCAAAA
AAGCAGCGCTGCAGCACAAGCTGGACATACAGTTGCGCCGCCACGAGCTG
GCCTCGTCCCGCGAGGAATTCCAGAAGGTTCTGGATGCCGTGCGGCACTT
TCTGCTCTATGTGGAGCAGGAGCTAACCGCCCAGGCGCCACGCGTTGAGT
GGCTGACCGGCGACGAACTGAGCGTGGCGGATATCTCGCTGGGATTGCTG
CTGCATCGACTGTATCAGCTGGGATTCGAGAATCAGTTCTGGACCTTCGG
AAAGCTGCCGCAGGTGGAGGCATACTTCTTGCGCTTCCGGCAGCGCGAGT
CCTTCCACCGCCTGCAGCCGAGCAACTTTGCCATACTGCGCGAAATGTGG
ACCCGAACGCCGGGCAACTATAAGCTAGGAGCGGGCGCCGGCTTCCTGGG
TATGGCCATGTTCGCCGCCTTCGCGCACAAGTGAGCGGAGCAGCGGGACA
GCAGACTTTGTTAACAAATCCTTTTACTGTTAAAGTTGGGCACATATAAA
CACACGAACATAAGAACGCTTAAAGCTACGCACTGCTGATGAAGGATGCT
TGGGGTGTCATGGTAAGAATCCGGCGGTGGAGGAGGATGAGGAGAAGAGC
GCGCGATCCAGTGCCAGCCTCGGCTGCTTGCTTAGTAATATCATCATCGT
TTCATATCATCGTTGCTGAATATACAAAAATTTGGTATAAATTCCAAAAA
AAAAAAAAA

RE69232.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-RA 1595 CG4623-RA 1..1595 1..1595 7975 100 Plus
CG4623.b 1592 CG4623.b 1..1592 1..1595 7905 99.8 Plus
CG4623.a 1509 CG4623.a 1..1299 1..1299 6495 100 Plus
CG4623.a 1509 CG4623.a 1299..1509 1385..1595 1055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5136110..5136863 841..1595 3605 98.8 Plus
chr3L 24539361 chr3L 5134512..5134978 1..476 2150 97.3 Plus
chr3L 24539361 chr3L 5135621..5135813 474..666 965 100 Plus
chr3L 24539361 chr3L 5135871..5136045 666..840 830 98.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:13:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5143563..5144319 841..1597 3785 100 Plus
3L 28110227 3L 5141955..5142430 1..476 2380 100 Plus
3L 28110227 3L 5143073..5143265 474..666 965 100 Plus
3L 28110227 3L 5143323..5143497 666..840 875 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5136663..5137419 841..1597 3785 100 Plus
3L 28103327 3L 5135055..5135530 1..476 2380 100 Plus
3L 28103327 3L 5136173..5136365 474..666 965 100 Plus
3L 28103327 3L 5136423..5136597 666..840 875 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:10:28 has no hits.

RE69232.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:11:26 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5135872..5136045 667..840 98 -> Plus
chr3L 5134512..5134975 1..473 97 -> Plus
chr3L 5135621..5135813 474..666 100 -> Plus
chr3L 5136110..5136863 841..1595 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:01 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 1..984 351..1334 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:10 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 1..984 351..1334 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:32:51 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 1..984 351..1334 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:54 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 1..984 351..1334 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:24:36 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 1..984 351..1334 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:37 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 1..1595 1..1595 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:10 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 1..1595 1..1595 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:32:51 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 3..1597 1..1595 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:54 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 1..1595 1..1595 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:36 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 3..1597 1..1595 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:26 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5141955..5142427 1..473 100 -> Plus
3L 5143073..5143265 474..666 100 -> Plus
3L 5143324..5143497 667..840 100 -> Plus
3L 5143563..5144317 841..1595 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:26 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5141955..5142427 1..473 100 -> Plus
3L 5143073..5143265 474..666 100 -> Plus
3L 5143324..5143497 667..840 100 -> Plus
3L 5143563..5144317 841..1595 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:26 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5141955..5142427 1..473 100 -> Plus
3L 5143073..5143265 474..666 100 -> Plus
3L 5143324..5143497 667..840 100 -> Plus
3L 5143563..5144317 841..1595 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:32:51 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5136173..5136365 474..666 100 -> Plus
arm_3L 5135055..5135527 1..473 100 -> Plus
arm_3L 5136424..5136597 667..840 100 -> Plus
arm_3L 5136663..5137417 841..1595 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:02 Download gff for RE69232.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5136173..5136365 474..666 100 -> Plus
3L 5136424..5136597 667..840 100 -> Plus
3L 5135055..5135527 1..473 100 -> Plus
3L 5136663..5137417 841..1595 100   Plus

RE69232.pep Sequence

Translation from 350 to 1333

> RE69232.pep
MSEQTKEIEALPPTLQDFKAPDLPANKPVLFFHPYNFHAQKVLMVFYEKK
IDFFPYVVDLCNGEQYSNWFLNLNPKGDVPVLQDGALVIPSSTHIINYVE
SKFRGDRSLKPAHNSKEFDQMLIFEQAMARLPVGTLSLGSFIHDDLKLVP
KAPFIGPVRQSCLKNNEKVLDLLRHSVDEQATKKAALQHKLDIQLRRHEL
ASSREEFQKVLDAVRHFLLYVEQELTAQAPRVEWLTGDELSVADISLGLL
LHRLYQLGFENQFWTFGKLPQVEAYFLRFRQRESFHRLQPSNFAILREMW
TRTPGNYKLGAGAGFLGMAMFAAFAHK*

RE69232.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23970-PA 328 GF23970-PA 1..328 1..327 1404 76.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15262-PA 327 GG15262-PA 1..327 1..327 1668 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16180-PA 331 GH16180-PA 1..331 1..327 1207 67.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Gdap1-PA 327 CG4623-PA 1..327 1..327 1713 100 Plus
Gdap1-PB 326 CG4623-PB 1..326 1..327 1695 99.7 Plus
Gdap1-PC 320 CG4623-PC 1..316 1..316 1656 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13331-PA 333 GI13331-PA 1..333 1..327 1229 70 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22618-PA 330 GL22618-PA 1..330 1..327 1364 75.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18310-PA 330 GA18310-PA 1..330 1..327 1361 74.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14696-PA 327 GM14696-PA 1..327 1..327 1725 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13879-PA 327 GD13879-PA 1..327 1..327 1725 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13158-PA 331 GJ13158-PA 1..331 1..327 1276 71.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20321-PA 330 GK20321-PA 1..330 1..327 1365 74.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21484-PA 327 GE21484-PA 1..327 1..327 1682 95.1 Plus

RE69232.hyp Sequence

Translation from 350 to 1333

> RE69232.hyp
MSEQTKEIEALPPTLQDFKAPDLPANKPVLFFHPYNFHAQKVLMVFYEKK
IDFFPYVVDLCNGEQYSNWFLNLNPKGDVPVLQDGALVIPSSTHIINYVE
SKFRGDRSLKPAHNSKEFDQMLIFEQAMARLPVGTLSLGSFIHDDLKLVP
KAPFIGPVRQSCLKNNEKVLDLLRHSVDEQATKKAALQHKLDIQLRRHEL
ASSREEFQKVLDAVRHFLLYVEQELTAQAPRVEWLTGDELSVADISLGLL
LHRLYQLGFENQFWTFGKLPQVEAYFLRFRQRESFHRLQPSNFAILREMW
TRTPGNYKLGAGAGFLGMAMFAAFAHK*

RE69232.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-PA 327 CG4623-PA 1..327 1..327 1713 100 Plus
CG4623-PB 326 CG4623-PB 1..326 1..327 1695 99.7 Plus
CG4623-PC 320 CG4623-PC 1..316 1..316 1656 100 Plus