BDGP Sequence Production Resources |
Search the DGRC for RE69448
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 694 |
Well: | 48 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Gapdh1-RA |
Protein status: | RE69448.pep: gold |
Sequenced Size: | 1342 |
Gene | Date | Evidence |
---|---|---|
CG12055 | 2001-12-13 | Blastp of sequenced clone |
CG12055 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12055 | 2003-01-01 | Sim4 clustering to Release 3 |
Gapdh1 | 2008-04-29 | Release 5.5 accounting |
Gapdh1 | 2008-08-15 | Release 5.9 accounting |
Gapdh1 | 2008-12-18 | 5.12 accounting |
1342 bp (1342 high quality bases) assembled on 2001-12-13
GenBank Submission: AY089643
> RE69448.complete CCTGATTTGCGAAAAAAGCTCCGGGAAAAGGAAAAAGCGGCAGTCGTAAT AGCGAACTGAAACTGAACGAGAGTAAAAGTGAAAAGACAGCAGGAACTCA GCCATGTCGAAGATCGGAATTAACGGATTTGGCCGCATCGGCCGCTTGGT GCTCCGCGCCGCCATCGATAAGGGCGCCTCCGTGGTGGCCGTCAACGATC CCTTCATCGATGTCAACTACATGGTTTACCTGTTTAAATTCGACTCGACT CACGGTCGTTTCAAGGGCACCGTTGCGGCTGAGGGCGGATTCCTGGTGGT GAACGGCCAGAAGATCACCGTGTTCAGCGAGCGCGACCCGGCCAACATCA ACTGGGCCAGTGCTGGAGCCGAGTATGTGGTGGAGTCCACCGGAGTGTTC ACCACCATTGACAAGGCGTCCACCCACTTGAAGGGCGGCGCCAAGAAGGT CATCATCTCGGCCCCATCCGCCGATGCGCCCATGTTCGTGTGCGGCGTTA ACCTGGACGCCTACAGCCCCGACATGAAGGTGGTCTCCAACGCCTCGTGC ACCACCAACTGCCTGGCTCCCCTGGCCAAGGTCATCAATGACAACTTCGA GATCGTCGAGGGTCTGATGACCACCGTGCACGCCACCACTGCCACCCAGA AGACCGTCGACGGTCCCTCTGGCAAACTGTGGCGCGATGGACGTGGCGCC GCCCAGAACATCATCCCGGCCGCCACCGGAGCCGCCAAGGCTGTGGGCAA GGTCATCCCCGCCCTGAACGGCAAGCTGACCGGCATGGCTTTCCGCGTGC CCACGCCCAATGTCTCCGTTGTGGATCTTACCGTCCGCTTGGGCAAGGGA GCCACCTATGACGAAATCAAGGCTAAGGTCGAGGAGGCCTCCAAGGGACC CCTGAAGGGAATCCTGGGCTACACCGATGAGGAGGTGGTCTCCACCGACT TCTTCAGCGACACCCATTCGTCTGTGTTCGACGCCAAGGCTGGCATTTCG CTGAACGATAAGTTCGTCAAGCTAATCTCGTGGTACGACAACGAGTTCGG TTACTCCAACCGCGTCATCGACCTGATCAAGTATATGCAGAGCAAGGACT AAACTAGCCAAAACTATCGTACAAACCCGGCGCCCAGCAGCTGGTCGGGA ATCACTGTTGCATAATCCGCAAGGGGCGCAATTGAGGATGCTTTTTTTTT CAAATGCACAAAATAGCCATAATTACGCAAAGCTACATATTTATTGTTGT TGAATAAAGTATCGCCCTGTTACTGTATTTAAATGCCAGCTATTTGAAAA ATAAAACTTGTGCATCGAATGAAGATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3679220..3680543 | 1325..1 | 6560 | 99.8 | Minus |
chrX | 22417052 | chrX | 15758188..15759189 | 102..1103 | 3315 | 88.7 | Plus |
chr2R | 21145070 | chr2R | 12846558..12846950 | 832..440 | 405 | 73.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7791900..7793223 | 1325..1 | 6560 | 99.8 | Minus |
X | 23542271 | X | 15868334..15869335 | 102..1103 | 3330 | 88.8 | Plus |
2R | 25286936 | 2R | 16959364..16959756 | 832..440 | 405 | 73.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7793099..7794422 | 1325..1 | 6570 | 99.8 | Minus |
X | 23527363 | X | 15876432..15877433 | 102..1103 | 3330 | 88.8 | Plus |
2R | 25260384 | 2R | 16960563..16960688 | 832..707 | 195 | 76.9 | Minus |
2R | 25260384 | 2R | 16960702..16960787 | 693..608 | 145 | 77.9 | Minus |
2R | 25260384 | 2R | 16960813..16960861 | 582..534 | 140 | 85.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3679219..3680543 | 1..1326 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh1-RB | 1..999 | 104..1102 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh1-RB | 1..999 | 104..1102 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh1-RA | 1..999 | 104..1102 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh1-RB | 1..999 | 104..1102 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh1-RA | 1..999 | 104..1102 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh1-RA | 158..1481 | 1..1326 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh1-RA | 158..1481 | 1..1326 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh1-RA | 158..1480 | 1..1324 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh1-RA | 158..1481 | 1..1326 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh1-RA | 158..1480 | 1..1324 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7791899..7793223 | 1..1326 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7791899..7793223 | 1..1326 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7791899..7793223 | 1..1326 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3679404..3680728 | 1..1326 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7793098..7794422 | 1..1326 | 99 | Minus |
Translation from 103 to 1101
> RE69448.pep MSKIGINGFGRIGRLVLRAAIDKGASVVAVNDPFIDVNYMVYLFKFDSTH GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFT TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDMKVVSNASCT TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA TYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISL NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17051-PA | 332 | GF17051-PA | 1..332 | 1..332 | 1707 | 97 | Plus |
Dana\GF13438-PA | 771 | GF13438-PA | 1..330 | 1..329 | 1159 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10711-PA | 332 | GG10711-PA | 1..332 | 1..332 | 1736 | 99.4 | Plus |
Dere\GG17924-PA | 332 | GG17924-PA | 1..332 | 1..332 | 1708 | 97 | Plus |
Dere\GG22232-PA | 351 | GG22232-PA | 1..333 | 1..332 | 1146 | 64 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21340-PA | 332 | GH21340-PA | 1..332 | 1..332 | 1685 | 95.2 | Plus |
Dgri\GH22833-PA | 352 | GH22833-PA | 1..333 | 1..332 | 1158 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gapdh1-PB | 332 | CG12055-PB | 1..332 | 1..332 | 1697 | 100 | Plus |
Gapdh1-PA | 332 | CG12055-PA | 1..332 | 1..332 | 1697 | 100 | Plus |
Gapdh2-PC | 332 | CG8893-PC | 1..332 | 1..332 | 1665 | 97.3 | Plus |
Gapdh2-PA | 332 | CG8893-PA | 1..332 | 1..332 | 1665 | 97.3 | Plus |
CG9010-PA | 343 | CG9010-PA | 1..333 | 1..332 | 1114 | 65.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20756-PA | 332 | GI20756-PA | 1..332 | 1..332 | 1711 | 97.3 | Plus |
Dmoj\GI21211-PA | 334 | GI21211-PA | 3..332 | 4..332 | 1158 | 66.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10260-PA | 366 | GL10260-PA | 1..331 | 1..331 | 1703 | 96.7 | Plus |
Dper\GL10495-PA | 364 | GL10495-PA | 1..333 | 1..332 | 1160 | 64.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Gapdh2-PA | 332 | GA21397-PA | 1..332 | 1..332 | 1715 | 97.6 | Plus |
Dpse\GA21475-PA | 364 | GA21475-PA | 1..333 | 1..332 | 1155 | 64.3 | Plus |
Dpse\GA27234-PA | 170 | GA27234-PA | 89..170 | 241..332 | 259 | 55.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22592-PA | 332 | GM22592-PA | 1..332 | 1..332 | 1708 | 97.3 | Plus |
Dsec\GM20020-PA | 344 | GM20020-PA | 1..333 | 1..332 | 1149 | 64.6 | Plus |
Dsec\GM20757-PA | 161 | GM20757-PA | 1..161 | 172..332 | 836 | 98.8 | Plus |
Dsec\GM20756-PA | 149 | GM20756-PA | 1..149 | 1..149 | 779 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25506-PA | 344 | GD25506-PA | 1..333 | 1..332 | 1143 | 64.3 | Plus |
Dsim\GD17248-PA | 147 | GD17248-PA | 1..143 | 1..143 | 735 | 97.2 | Plus |
Dsim\GD10219-PA | 86 | GD10219-PA | 3..86 | 249..332 | 430 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20492-PA | 332 | GJ20492-PA | 1..332 | 1..332 | 1712 | 97.6 | Plus |
Dvir\GJ20812-PA | 346 | GJ20812-PA | 1..333 | 1..332 | 1149 | 63.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17768-PA | 332 | GK17768-PA | 1..332 | 1..332 | 1703 | 96.7 | Plus |
Dwil\GK21310-PA | 428 | GK21310-PA | 1..335 | 1..332 | 1204 | 66.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Gapdh1-PA | 332 | GE23629-PA | 1..332 | 1..332 | 1736 | 99.4 | Plus |
Dyak\GE17231-PA | 332 | GE17231-PA | 1..332 | 1..332 | 1711 | 97.3 | Plus |
Dyak\GE14229-PA | 350 | GE14229-PA | 3..332 | 4..332 | 1149 | 64.2 | Plus |
Translation from 103 to 1101
> RE69448.hyp MSKIGINGFGRIGRLVLRAAIDKGASVVAVNDPFIDVNYMVYLFKFDSTH GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFT TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDMKVVSNASCT TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA TYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISL NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gapdh1-PB | 332 | CG12055-PB | 1..332 | 1..332 | 1697 | 100 | Plus |
Gapdh1-PA | 332 | CG12055-PA | 1..332 | 1..332 | 1697 | 100 | Plus |
Gapdh2-PC | 332 | CG8893-PC | 1..332 | 1..332 | 1665 | 97.3 | Plus |
Gapdh2-PA | 332 | CG8893-PA | 1..332 | 1..332 | 1665 | 97.3 | Plus |
CG9010-PA | 343 | CG9010-PA | 1..333 | 1..332 | 1114 | 65.2 | Plus |