BDGP Sequence Production Resources |
Search the DGRC for RE69521
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 695 |
Well: | 21 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pabp2-RA |
Protein status: | RE69521.pep: gold |
Preliminary Size: | 1662 |
Sequenced Size: | 1399 |
Gene | Date | Evidence |
---|---|---|
CG2163 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2163 | 2002-11-12 | Blastp of sequenced clone |
CG2163 | 2003-01-01 | Sim4 clustering to Release 3 |
Pabp2 | 2008-04-29 | Release 5.5 accounting |
Pabp2 | 2008-08-15 | Release 5.9 accounting |
Pabp2 | 2008-12-18 | 5.12 accounting |
1399 bp (1399 high quality bases) assembled on 2002-11-12
GenBank Submission: AY075519
> RE69521.complete GTCGTCGGTAAAAACGAGGCGAACACAAATCTGTTTCAATTTGTGTCAAA AACTACGTACGTTTTCGTATAGTTGTAAATATTAGTAAATAATAAATAAA TAAGCTTATAAATAAATATTTATGCTGACGTGGTGTGGCGCGAAACAAAG TCGAAAAGGGTTTAAAAACGTAGACTTTTGAACGAAAAACAGCAACCCAG CAACCCAGCGTACGTGTGTTTTCACAGGGCAGCCATTTTGGGCGAACTCA ACGTCAGCAGAACGAGCTCGTAATTTGTACATTTATTAAACCTACCATAC ATACATAGTTACGACAACTGCCGTTTTGAGTACCACGCCGGAAGCTTTTG CGCCAACAAAACCGAGCTTTTGTAGCAGACGTAAACAAACCCAAATCCAA AGCAATGGCCGATGAAGATATCACATTGAACGAGGATCAGCTCCTGGAGT CATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATCGCCACAGAGGTC GAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGAGGCCATAAAGGC TCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAAAGCAGATGCAGT CGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACCGGCTTGGCCACA GTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACACGCGGTCCGTCTA CGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAACTGGAGGCCCACT TCCACGGATGCGGCACAATCAACCGAGTAACCATACTCTGCAACAAGGCT GACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGGTTCCAAGGAGTT TGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCCGGGGGCGTCAAA TAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTCTCCACCACAAAC CGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCGTGTCTCCCGGGC GTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTATGGGTTACCGTG GTCGCGCCAATTACTACGCTCCTTACTGATTATTGTTTTATTAAAATCCC TAGTAAGGTAAGTTGACAATTTCGAACTGAAAATAATTGATAGTTGAAAT TTTATATGTGTGGGTTGCGTCCGATTTATGTCGGTTACATAAAGTAATCC GATATCTATCTCTTATATTTTGATACATTTTTTTTCTTAAAATTTATAAA ACCAATGAGGACGTCTTTTTATGTTAAATTTAAGTTGTTAGAAAATGCCG TTTGTTTTTATGGAGCTAAATAGATTTAGTTTGCATAGCTGGTAGATCAT TACGGGAAATAAAAACAATCAAATTTAAAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 4019871..4020276 | 502..907 | 1985 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 4018916..4019206 | 1..291 | 1440 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 4020624..4020982 | 1040..1377 | 1410 | 94.2 | Plus |
chr2R | 21145070 | chr2R | 4019404..4019616 | 292..504 | 1065 | 100 | Plus |
chr2R | 21145070 | chr2R | 4020423..4020559 | 904..1040 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 8132388..8132793 | 502..907 | 2000 | 99.5 | Plus |
2R | 25286936 | 2R | 8133141..8133478 | 1040..1377 | 1690 | 100 | Plus |
2R | 25286936 | 2R | 8131433..8131723 | 1..291 | 1440 | 99.7 | Plus |
2R | 25286936 | 2R | 8131921..8132133 | 292..504 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 8132940..8133076 | 904..1040 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 8133587..8133992 | 502..907 | 2000 | 99.5 | Plus |
2R | 25260384 | 2R | 8134340..8134677 | 1040..1377 | 1690 | 100 | Plus |
2R | 25260384 | 2R | 8132632..8132922 | 1..291 | 1440 | 99.6 | Plus |
2R | 25260384 | 2R | 8133120..8133332 | 292..504 | 1065 | 100 | Plus |
2R | 25260384 | 2R | 8134139..8134275 | 904..1040 | 685 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 4019404..4019615 | 292..503 | 100 | -> | Plus |
chr2R | 4019873..4020274 | 504..905 | 99 | -> | Plus |
chr2R | 4020425..4020558 | 906..1039 | 100 | -> | Plus |
chr2R | 4020624..4020869 | 1040..1284 | 98 | -> | Plus |
chr2R | 4020890..4020982 | 1285..1377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pabp2-RB | 1..675 | 405..1079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pabp2-RB | 1..675 | 405..1079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pabp2-RA | 1..675 | 405..1079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pabp2-RB | 1..675 | 405..1079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pabp2-RA | 1..675 | 405..1079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pabp2-RB | 21..1399 | 1..1379 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pabp2-RB | 1..1376 | 1..1376 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pabp2-RB | 3..1378 | 1..1376 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pabp2-RB | 21..1399 | 1..1379 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pabp2-RB | 3..1378 | 1..1376 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8131921..8132132 | 292..503 | 100 | -> | Plus |
2R | 8131433..8131723 | 1..291 | 99 | -> | Plus |
2R | 8132390..8132791 | 504..905 | 99 | -> | Plus |
2R | 8132942..8133075 | 906..1039 | 100 | -> | Plus |
2R | 8133141..8133478 | 1040..1377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8131921..8132132 | 292..503 | 100 | -> | Plus |
2R | 8131433..8131723 | 1..291 | 99 | -> | Plus |
2R | 8132390..8132791 | 504..905 | 99 | -> | Plus |
2R | 8132942..8133075 | 906..1039 | 100 | -> | Plus |
2R | 8133141..8133478 | 1040..1377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8131921..8132132 | 292..503 | 100 | -> | Plus |
2R | 8131433..8131723 | 1..291 | 99 | -> | Plus |
2R | 8132390..8132791 | 504..905 | 99 | -> | Plus |
2R | 8132942..8133075 | 906..1039 | 100 | -> | Plus |
2R | 8133141..8133478 | 1040..1377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 4018938..4019228 | 1..291 | 99 | -> | Plus |
arm_2R | 4019426..4019637 | 292..503 | 100 | -> | Plus |
arm_2R | 4019895..4020296 | 504..905 | 99 | -> | Plus |
arm_2R | 4020447..4020580 | 906..1039 | 100 | -> | Plus |
arm_2R | 4020646..4020983 | 1040..1377 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8133589..8133990 | 504..905 | 99 | -> | Plus |
2R | 8134141..8134274 | 906..1039 | 100 | -> | Plus |
2R | 8134340..8134677 | 1040..1377 | 100 | Plus | |
2R | 8132632..8132922 | 1..291 | 99 | -> | Plus |
2R | 8133120..8133331 | 292..503 | 100 | -> | Plus |
Translation from 404 to 1078
> RE69521.pep MADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKAR VKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYV GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFV ETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRAC CHSTFRGARRAMGYRGRANYYAPY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13666-PA | 224 | GF13666-PA | 1..224 | 1..224 | 1172 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23338-PA | 224 | GG23338-PA | 1..224 | 1..224 | 1180 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21908-PA | 224 | GH21908-PA | 1..224 | 1..224 | 1161 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pabp2-PB | 224 | CG2163-PB | 1..224 | 1..224 | 1149 | 100 | Plus |
Pabp2-PA | 224 | CG2163-PA | 1..224 | 1..224 | 1149 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19259-PA | 224 | GI19259-PA | 1..224 | 1..224 | 1168 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17107-PA | 225 | GL17107-PA | 1..225 | 1..224 | 1145 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15278-PA | 225 | GA15278-PA | 1..225 | 1..224 | 1148 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21011-PA | 229 | GM21011-PA | 1..229 | 1..224 | 1147 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10545-PA | 229 | GD10545-PA | 1..229 | 1..224 | 1147 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22134-PA | 224 | GJ22134-PA | 1..224 | 1..224 | 1167 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23192-PA | 225 | GK23192-PA | 1..225 | 1..224 | 1158 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Pabp2-PA | 225 | GE19180-PA | 1..225 | 1..224 | 1163 | 98.2 | Plus |
Translation from 404 to 1078
> RE69521.hyp MADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKAR VKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYV GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFV ETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRAC CHSTFRGARRAMGYRGRANYYAPY*