Clone RE69521 Report

Search the DGRC for RE69521

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:695
Well:21
Vector:pFlc-1
Associated Gene/TranscriptPabp2-RA
Protein status:RE69521.pep: gold
Preliminary Size:1662
Sequenced Size:1399

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2163 2002-01-01 Sim4 clustering to Release 2
CG2163 2002-11-12 Blastp of sequenced clone
CG2163 2003-01-01 Sim4 clustering to Release 3
Pabp2 2008-04-29 Release 5.5 accounting
Pabp2 2008-08-15 Release 5.9 accounting
Pabp2 2008-12-18 5.12 accounting

Clone Sequence Records

RE69521.complete Sequence

1399 bp (1399 high quality bases) assembled on 2002-11-12

GenBank Submission: AY075519

> RE69521.complete
GTCGTCGGTAAAAACGAGGCGAACACAAATCTGTTTCAATTTGTGTCAAA
AACTACGTACGTTTTCGTATAGTTGTAAATATTAGTAAATAATAAATAAA
TAAGCTTATAAATAAATATTTATGCTGACGTGGTGTGGCGCGAAACAAAG
TCGAAAAGGGTTTAAAAACGTAGACTTTTGAACGAAAAACAGCAACCCAG
CAACCCAGCGTACGTGTGTTTTCACAGGGCAGCCATTTTGGGCGAACTCA
ACGTCAGCAGAACGAGCTCGTAATTTGTACATTTATTAAACCTACCATAC
ATACATAGTTACGACAACTGCCGTTTTGAGTACCACGCCGGAAGCTTTTG
CGCCAACAAAACCGAGCTTTTGTAGCAGACGTAAACAAACCCAAATCCAA
AGCAATGGCCGATGAAGATATCACATTGAACGAGGATCAGCTCCTGGAGT
CATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATCGCCACAGAGGTC
GAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGAGGCCATAAAGGC
TCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAAAGCAGATGCAGT
CGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACCGGCTTGGCCACA
GTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACACGCGGTCCGTCTA
CGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAACTGGAGGCCCACT
TCCACGGATGCGGCACAATCAACCGAGTAACCATACTCTGCAACAAGGCT
GACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGGTTCCAAGGAGTT
TGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCCGGGGGCGTCAAA
TAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTCTCCACCACAAAC
CGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCGTGTCTCCCGGGC
GTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTATGGGTTACCGTG
GTCGCGCCAATTACTACGCTCCTTACTGATTATTGTTTTATTAAAATCCC
TAGTAAGGTAAGTTGACAATTTCGAACTGAAAATAATTGATAGTTGAAAT
TTTATATGTGTGGGTTGCGTCCGATTTATGTCGGTTACATAAAGTAATCC
GATATCTATCTCTTATATTTTGATACATTTTTTTTCTTAAAATTTATAAA
ACCAATGAGGACGTCTTTTTATGTTAAATTTAAGTTGTTAGAAAATGCCG
TTTGTTTTTATGGAGCTAAATAGATTTAGTTTGCATAGCTGGTAGATCAT
TACGGGAAATAAAAACAATCAAATTTAAAAAAGAAAAAAAAAAAAAAAA

RE69521.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-RB 1571 Pabp2-RB 49..1425 1..1377 6840 99.7 Plus
Pabp2-RA 1949 Pabp2-RA 49..1155 1..1107 5490 99.7 Plus
Pabp2.a 1558 Pabp2.a 34..1143 1..1107 5435 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4019871..4020276 502..907 1985 99.3 Plus
chr2R 21145070 chr2R 4018916..4019206 1..291 1440 99.7 Plus
chr2R 21145070 chr2R 4020624..4020982 1040..1377 1410 94.2 Plus
chr2R 21145070 chr2R 4019404..4019616 292..504 1065 100 Plus
chr2R 21145070 chr2R 4020423..4020559 904..1040 685 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:13:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8132388..8132793 502..907 2000 99.5 Plus
2R 25286936 2R 8133141..8133478 1040..1377 1690 100 Plus
2R 25286936 2R 8131433..8131723 1..291 1440 99.7 Plus
2R 25286936 2R 8131921..8132133 292..504 1065 100 Plus
2R 25286936 2R 8132940..8133076 904..1040 685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8133587..8133992 502..907 2000 99.5 Plus
2R 25260384 2R 8134340..8134677 1040..1377 1690 100 Plus
2R 25260384 2R 8132632..8132922 1..291 1440 99.6 Plus
2R 25260384 2R 8133120..8133332 292..504 1065 100 Plus
2R 25260384 2R 8134139..8134275 904..1040 685 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:38:03 has no hits.

RE69521.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:39:00 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4019404..4019615 292..503 100 -> Plus
chr2R 4019873..4020274 504..905 99 -> Plus
chr2R 4020425..4020558 906..1039 100 -> Plus
chr2R 4020624..4020869 1040..1284 98 -> Plus
chr2R 4020890..4020982 1285..1377 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:12 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 1..675 405..1079 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:04:53 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 1..675 405..1079 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:21:49 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 1..675 405..1079 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:55:05 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 1..675 405..1079 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:17 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 1..675 405..1079 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:24:19 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 21..1399 1..1379 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:04:53 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 1..1376 1..1376 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:21:49 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 3..1378 1..1376 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:55:06 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 21..1399 1..1379 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:17 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 3..1378 1..1376 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:39:00 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8131921..8132132 292..503 100 -> Plus
2R 8131433..8131723 1..291 99 -> Plus
2R 8132390..8132791 504..905 99 -> Plus
2R 8132942..8133075 906..1039 100 -> Plus
2R 8133141..8133478 1040..1377 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:39:00 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8131921..8132132 292..503 100 -> Plus
2R 8131433..8131723 1..291 99 -> Plus
2R 8132390..8132791 504..905 99 -> Plus
2R 8132942..8133075 906..1039 100 -> Plus
2R 8133141..8133478 1040..1377 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:39:00 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8131921..8132132 292..503 100 -> Plus
2R 8131433..8131723 1..291 99 -> Plus
2R 8132390..8132791 504..905 99 -> Plus
2R 8132942..8133075 906..1039 100 -> Plus
2R 8133141..8133478 1040..1377 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:21:49 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4018938..4019228 1..291 99 -> Plus
arm_2R 4019426..4019637 292..503 100 -> Plus
arm_2R 4019895..4020296 504..905 99 -> Plus
arm_2R 4020447..4020580 906..1039 100 -> Plus
arm_2R 4020646..4020983 1040..1377 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:27:26 Download gff for RE69521.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8133589..8133990 504..905 99 -> Plus
2R 8134141..8134274 906..1039 100 -> Plus
2R 8134340..8134677 1040..1377 100   Plus
2R 8132632..8132922 1..291 99 -> Plus
2R 8133120..8133331 292..503 100 -> Plus

RE69521.pep Sequence

Translation from 404 to 1078

> RE69521.pep
MADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKAR
VKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYV
GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFV
ETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRAC
CHSTFRGARRAMGYRGRANYYAPY*

RE69521.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13666-PA 224 GF13666-PA 1..224 1..224 1172 98.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23338-PA 224 GG23338-PA 1..224 1..224 1180 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21908-PA 224 GH21908-PA 1..224 1..224 1161 96.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-PB 224 CG2163-PB 1..224 1..224 1149 100 Plus
Pabp2-PA 224 CG2163-PA 1..224 1..224 1149 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19259-PA 224 GI19259-PA 1..224 1..224 1168 98.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17107-PA 225 GL17107-PA 1..225 1..224 1145 96 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15278-PA 225 GA15278-PA 1..225 1..224 1148 96.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21011-PA 229 GM21011-PA 1..229 1..224 1147 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10545-PA 229 GD10545-PA 1..229 1..224 1147 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22134-PA 224 GJ22134-PA 1..224 1..224 1167 97.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23192-PA 225 GK23192-PA 1..225 1..224 1158 97.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Pabp2-PA 225 GE19180-PA 1..225 1..224 1163 98.2 Plus

RE69521.hyp Sequence

Translation from 404 to 1078

> RE69521.hyp
MADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKAR
VKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYV
GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFV
ETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRAC
CHSTFRGARRAMGYRGRANYYAPY*

RE69521.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-PB 224 CG2163-PB 1..224 1..224 1149 100 Plus
Pabp2-PA 224 CG2163-PA 1..224 1..224 1149 100 Plus