BDGP Sequence Production Resources |
Search the DGRC for RE69619
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 696 |
Well: | 19 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mod(r)-RA |
Protein status: | RE69619.pep: gold |
Preliminary Size: | 1520 |
Sequenced Size: | 1385 |
Gene | Date | Evidence |
---|---|---|
CG17828 | 2001-12-13 | Blastp of sequenced clone |
CG17828 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17828 | 2003-01-01 | Sim4 clustering to Release 3 |
mod(r) | 2008-04-29 | Release 5.5 accounting |
mod(r) | 2008-08-15 | Release 5.9 accounting |
mod(r) | 2008-12-18 | 5.12 accounting |
1385 bp (1385 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070595
> RE69619.complete TCATCGCTGTCTGGAACAGCGATGACTCGAGAGCGGAGGGTGGCAGCACT GAAATGGTCACAGAACGAAAATGCAACTTCGATCGGGGCATATAAAACCA GTGCTTCCAATCCGAAGGCAAAGCATAAAAGATCAGAACATCAGTAGCCG AAGATTGGCTGAGTAGCACGGACAGCGGGCAAGTCCTTTGAAACGTTGGT AGTTTGCAACCGGGTTTGCCAACTTCCTTTGGAGTTCAGTGGTGCTCAAC TATCGACACAACTATCCTCGGCTTTCGCAAAACTCAGTAAACCGATCTAA CGCAGACACATTGACATTCGAAAATTGGGATTGAAAACTCAAGATGCCGA CTACACCACAGGATCTTGCCCTTGCCCACTCTCTTGCTCAAAGACCTCCG ACCGATAGCAGTGAGGCCAAGGAGCAGGAGGCCGGCGAATCGGACAACCT GCCCAACCTGTGCACTTTGTCGCTGGACGAACTGAAACAGCTGGACAGGG ATCCCGAGTTCTTCGAGGACTTCATCGAGGAGATGTCCGTGGTGCAGTAC CTGAACGAGGAGCTCGATTCAATGATGGACCAGGTGGAGATTATATCAAG AGAGAACGAGTGCAAGGGCATTCATCTGGTAGAGCTGAAGCGCCGACTCA GCGACGATTTTACAGCTTTAAAAAACCTAGGCGAGAAATGCGACCGGCTG AACAAGAAGTACTTCAAGAAGTCGGATGAATACGCGCCTCAGCATATCAG GGAGCTTCTTCAGATTGCAGCTTCCAATGCCGATGGCGACTGCGATCGTC ACGTGGAGCACTTCCTGAACGGAAAGACCGACGTGCAGACTTTCCTCAAC ACGTACCAGTGGTCGAAGAAGATCAGTACCGAGCGCAAGGCCAAAGAGGA GCGCCTGGGCACCCAGCTCAGTGCTCTGGAGCGGGCCGGTATCTAGGATT GCCGTGACACTCCCTGGCCGTGCCATCCAGAGCACGGTCCTCCCACTCCT CGCACTCCTCCCACACCGCCACGATCCGCGTCGCAATAGTAGAGAATATC AATGTTAGTAAATAGAGAAGTTAAGCCAGAGATGGGGCGACATAATCATG GCACACACGGCCACGCATTCCCAGAACAGAAAGCAAAACCTTGTTGAAGT AATAAGAAGGTGCACTAGTTGTTCGTTTCCCAAGATCGTTTACTTGGGAA GAGGGTCTTGTTATTCTATCCATACCCCGAAACGAAGCACTATGTGCAAC AGAACGCAGTCCGGAATCGCATGTATTACCTATTTACTTTTTTTCCTTTT GGTTAATCGTGAGCCCCATCCATATATTCTCTCCATATATACATATATAT TAAAAAAAAACTATGCTGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mod(r)-RA | 1355 | mod(r)-RA | 26..1354 | 39..1367 | 6630 | 99.9 | Plus |
mod(r)-RC | 1372 | mod(r)-RC | 297..1359 | 305..1367 | 5300 | 99.9 | Plus |
mod(r)-RD | 1371 | mod(r)-RD | 42..754 | 39..751 | 3565 | 100 | Plus |
mod(r)-RD | 1371 | mod(r)-RD | 754..1358 | 763..1367 | 3010 | 99.8 | Plus |
mod(r)-RC | 1372 | mod(r)-RC | 42..298 | 39..295 | 1285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 516426..517042 | 751..1367 | 3070 | 99.8 | Plus |
chrX | 22417052 | chrX | 515834..516144 | 294..604 | 1540 | 99.7 | Plus |
chrX | 22417052 | chrX | 515535..515790 | 39..294 | 1280 | 100 | Plus |
chrX | 22417052 | chrX | 516200..516352 | 600..752 | 765 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 622433..623049 | 751..1367 | 3070 | 99.8 | Plus |
X | 23542271 | X | 621841..622151 | 294..604 | 1540 | 99.7 | Plus |
X | 23542271 | X | 621542..621797 | 39..294 | 1280 | 100 | Plus |
X | 23542271 | X | 622207..622359 | 600..752 | 765 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 630531..631147 | 751..1367 | 3070 | 99.8 | Plus |
X | 23527363 | X | 629939..630249 | 294..604 | 1540 | 99.6 | Plus |
X | 23527363 | X | 629640..629895 | 39..294 | 1280 | 100 | Plus |
X | 23527363 | X | 630305..630457 | 600..752 | 765 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 515529..515790 | 32..294 | 98 | -> | Plus |
chrX | 515835..516139 | 295..599 | 100 | -> | Plus |
chrX | 516200..516351 | 600..751 | 100 | -> | Plus |
chrX | 516427..517042 | 752..1369 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod(r)-RC | 1..603 | 344..946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod(r)-RC | 1..603 | 344..946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod(r)-RA | 1..603 | 344..946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod(r)-RC | 1..603 | 344..946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod(r)-RA | 1..603 | 344..946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod(r)-RA | 1..1334 | 32..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod(r)-RA | 1..1334 | 32..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod(r)-RA | 7..1341 | 32..1369 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod(r)-RA | 1..1334 | 32..1366 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod(r)-RA | 7..1341 | 32..1369 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 621842..622146 | 295..599 | 100 | -> | Plus |
X | 621534..621797 | 28..294 | 97 | -> | Plus |
X | 622207..622358 | 600..751 | 100 | -> | Plus |
X | 622434..623049 | 752..1369 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 621842..622146 | 295..599 | 100 | -> | Plus |
X | 621534..621797 | 28..294 | 97 | -> | Plus |
X | 622207..622358 | 600..751 | 100 | -> | Plus |
X | 622434..623049 | 752..1369 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 621842..622146 | 295..599 | 100 | -> | Plus |
X | 621534..621797 | 28..294 | 97 | -> | Plus |
X | 622207..622358 | 600..751 | 100 | -> | Plus |
X | 622434..623049 | 752..1369 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 515567..515830 | 28..294 | 97 | -> | Plus |
arm_X | 515875..516179 | 295..599 | 100 | -> | Plus |
arm_X | 516240..516391 | 600..751 | 100 | -> | Plus |
arm_X | 516467..517082 | 752..1369 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 629632..629895 | 28..294 | 97 | -> | Plus |
X | 629940..630244 | 295..599 | 100 | -> | Plus |
X | 630305..630456 | 600..751 | 100 | -> | Plus |
X | 630532..631147 | 752..1369 | 99 | Plus |
Translation from 343 to 945
> RE69619.pep MPTTPQDLALAHSLAQRPPTDSSEAKEQEAGESDNLPNLCTLSLDELKQL DRDPEFFEDFIEEMSVVQYLNEELDSMMDQVEIISRENECKGIHLVELKR RLSDDFTALKNLGEKCDRLNKKYFKKSDEYAPQHIRELLQIAASNADGDC DRHVEHFLNGKTDVQTFLNTYQWSKKISTERKAKEERLGTQLSALERAGI *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22102-PA | 216 | GF22102-PA | 27..216 | 11..200 | 795 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12797-PA | 203 | GG12797-PA | 1..203 | 1..200 | 873 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24324-PA | 194 | GH24324-PA | 28..194 | 34..200 | 774 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vsp37A-PF | 200 | CG17828-PF | 1..200 | 1..200 | 1034 | 100 | Plus |
Vsp37A-PC | 200 | CG17828-PC | 1..200 | 1..200 | 1034 | 100 | Plus |
Vsp37A-PA | 200 | CG17828-PA | 1..200 | 1..200 | 1034 | 100 | Plus |
Vsp37A-PE | 196 | CG17828-PE | 1..196 | 1..200 | 1001 | 98 | Plus |
Vsp37A-PD | 196 | CG17828-PD | 1..196 | 1..200 | 1001 | 98 | Plus |
Vsp37A-PB | 196 | CG17828-PB | 1..196 | 1..200 | 1001 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14804-PA | 205 | GI14804-PA | 37..205 | 32..200 | 787 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21382-PA | 201 | GL21382-PA | 36..201 | 35..200 | 791 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14686-PA | 201 | GA14686-PA | 36..201 | 35..200 | 790 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19076-PA | 200 | GM19076-PA | 1..200 | 1..200 | 1038 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16515-PA | 200 | GD16515-PA | 1..200 | 1..200 | 1043 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19471-PA | 198 | GJ19471-PA | 30..198 | 32..200 | 792 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16437-PA | 205 | GK16437-PA | 36..205 | 31..200 | 779 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16623-PA | 203 | GE16623-PA | 1..203 | 1..200 | 888 | 84.2 | Plus |
Translation from 343 to 945
> RE69619.hyp MPTTPQDLALAHSLAQRPPTDSSEAKEQEAGESDNLPNLCTLSLDELKQL DRDPEFFEDFIEEMSVVQYLNEELDSMMDQVEIISRENECKGIHLVELKR RLSDDFTALKNLGEKCDRLNKKYFKKSDEYAPQHIRELLQIAASNADGDC DRHVEHFLNGKTDVQTFLNTYQWSKKISTERKAKEERLGTQLSALERAGI *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mod(r)-PF | 200 | CG17828-PF | 1..200 | 1..200 | 1034 | 100 | Plus |
mod(r)-PC | 200 | CG17828-PC | 1..200 | 1..200 | 1034 | 100 | Plus |
mod(r)-PA | 200 | CG17828-PA | 1..200 | 1..200 | 1034 | 100 | Plus |
mod(r)-PE | 196 | CG17828-PE | 1..196 | 1..200 | 1001 | 98 | Plus |
mod(r)-PD | 196 | CG17828-PD | 1..196 | 1..200 | 1001 | 98 | Plus |