Clone RE69682 Report

Search the DGRC for RE69682

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:696
Well:82
Vector:pFlc-1
Associated Gene/TranscriptCG13001-RA
Protein status:RE69682.pep: gold
Preliminary Size:1008
Sequenced Size:1793

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13001 2002-01-01 Sim4 clustering to Release 2
CG13001 2003-01-01 Sim4 clustering to Release 3
CG13001 2004-07-15 Blastp of sequenced clone
CG13001 2008-04-29 Release 5.5 accounting
CG13001 2008-08-15 Release 5.9 accounting
CG13001 2008-12-18 5.12 accounting

Clone Sequence Records

RE69682.complete Sequence

1793 bp (1793 high quality bases) assembled on 2004-07-15

GenBank Submission: BT015199

> RE69682.complete
GTTGTATACCAGAAAAAAATGGTATTAGCATTAGCAGAGAAAAAATCAAA
TAAATAAAGAAAAAATCAATTAAAAGTGCGCCATTCCAAAGGATTATCCC
AAAAGACGCGATCATCCATATCAGATGCTTAAGAATCGGCCGGAAAATCC
GACATCGAACTATTAGGCTAGTGAAAAAGTGCAAAATAAACATTCGCCCA
GTGGAGGGGGCCATACAGAAAACACTCGAGAGTCTTTCGAAAATACACAT
ATTATACCACACGGATCGTTTTGGATCTACAATGGCCACCAGCGAGATCT
CGAGCTCCAATGAGCGGCACTACTACGCCAAACTGGAGGCCATCAAGGAC
ATCAGGGACAAGACGCTGTCGCTGGAGAAGCTCAAAGTGCGGATCATCAA
GGAGGTGAAGCTGAGCGACGACGAGGAGAAGTGCCTGGAGGAGTACCGCA
AGGAGATGGAGCACCTGCTCGAGGAGAAGATGTCGCACGTGGAAGAGCTG
CGCCAGATCCACGCGGACATCAACGACATGGAGAACATCATCAAGCAGAC
GAAGGAGAACCAGACCCGCTCCTTCGACATGGCCAACCGGGTGTACGAGG
AGTACCTGGCCCTGAAGTACCAGATTGATCACATGCGCCGCGACTATCTC
GGACTAAGCCCGCTGCGAGATCTGCACGAGGAGGAGGGCAGTCCCATTTC
GAAGGATCGCTTCCAGACCAACTTCCTTAAGGTGGCCGCCCAGTCGGCGG
CAGCAGCAGCTGCTGCAGCTGCGGCGGCGGCCTCGGTTAATCAGAACTCG
TCGTTGGCCCGTCCGCATGCCCGGCATCCTCTGATGCCGGAGGCCACGGT
CACCGCGCTGCCTTCTGGCGGCGGACAGGGCGGCGTTGGTGGTGGCGGCG
CTGCAGGCGGTGGCGGAGGATCTGTGGGCGGCGGAGGCGGTGGTGGCGGC
AATCCTGGACACGCCTTCATGCCACCCGCACCGCCGGGAGCAGGCAGTGC
TGCTGCCGCCGCCGCTGCTGCTGCAGTGCGTCTGGGCAAGGGTGACTTCT
CAGCACCACCGCCACCGCCGCCGCCCAGCAATCGACTGCAGCAATCGCCT
TCGATCGGCATCGGCCACCATCCCTCGTTCCGCTCCGACTTCAATGTGAA
TCTCCGCCAGCAGCCGCCGCCCATGAAGTCCTGTCTGTCCTGCCACCAGC
AGATCCACCGGAACGCGCCCATCTGTCCGCTCTGCAAGGCCAAGTCGCGC
TCCCGCAATCCGAAGAAGCCCAAGAAGAAGAACAACTAAGTGGCCACCGC
TCCAGACCAGCAACTACACTCATCTTAAGTCCGGAGCTGGTTCCGGAAAC
TCAGCGCACTAAATCGAATGCGTTTTTTTTTTTTTTGCCTCATCTATTTA
TTATTAATCCCAATGAAAAGTATTACAACGACGCAAGGCGGGTGTGCTCA
TGATTATCGGAGAAGATTTAAAAGAATGTCAAATACTTGCATTAATATTT
TATACATTACTAGTGTATTTGAAAATCGATGAAGAAATTATTCATGACAC
GCCGGCCGCTAACAAATTCTCATAACAATTTTAGTTGGTAAACTCAATGA
ATTTGATTTTTATTTTAACTATAATCATAGGCTAAGTATTTTTTAAAAGC
TCAAATAACGTGTCAAATTATCGAGAACAAAAATTTTGTTTATACATGTA
AGCCATGCTAAATATGCAACTATGTTATATTTAAGCAGCAAAAAAAAAAC
ACAAATATCAATAAAAATATTTCATTTTTAAAAAAAAAAAAAA

RE69682.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-RA 1783 CG13001-RA 1..1780 2..1782 8865 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16830669..16832443 1779..2 8780 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:13:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16941083..16942862 1782..2 8855 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16949181..16950960 1782..2 8865 99.9 Minus
Blast to na_te.dros performed 2019-03-15 16:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3776..3968 1449..1649 157 56.2 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 3580..3666 1566..1656 120 63.7 Plus

RE69682.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:39:22 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16830669..16831494 951..1779 96 == Minus
chrX 16831579..16832443 1..866 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:16 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 1..1008 282..1289 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:33:58 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 1..1008 282..1289 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:06:37 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 1..1008 282..1289 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:17:53 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 1..1008 282..1289 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:25 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 1..1008 282..1289 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:40:04 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 1..1777 2..1779 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:33:58 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 1..1777 2..1779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:37 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 1..1777 2..1779 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:17:53 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 1..1777 2..1779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:25 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 9..1786 1..1779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:22 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
X 16941086..16942862 1..1779 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:22 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
X 16941086..16942862 1..1779 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:22 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
X 16941086..16942862 1..1779 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:37 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16835119..16836895 1..1779 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:54:57 Download gff for RE69682.complete
Subject Subject Range Query Range Percent Splice Strand
X 16949184..16950960 1..1779 99   Minus

RE69682.hyp Sequence

Translation from 281 to 1288

> RE69682.hyp
MATSEISSSNERHYYAKLEAIKDIRDKTLSLEKLKVRIIKEVKLSDDEEK
CLEEYRKEMEHLLEEKMSHVEELRQIHADINDMENIIKQTKENQTRSFDM
ANRVYEEYLALKYQIDHMRRDYLGLSPLRDLHEEEGSPISKDRFQTNFLK
VAAQSAAAAAAAAAAAASVNQNSSLARPHARHPLMPEATVTALPSGGGQG
GVGGGGAAGGGGGSVGGGGGGGGNPGHAFMPPAPPGAGSAAAAAAAAAVR
LGKGDFSAPPPPPPPSNRLQQSPSIGIGHHPSFRSDFNVNLRQQPPPMKS
CLSCHQQIHRNAPICPLCKAKSRSRNPKKPKKKNN*

RE69682.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-PA 335 CG13001-PA 1..335 1..335 1750 100 Plus

RE69682.pep Sequence

Translation from 281 to 1288

> RE69682.pep
MATSEISSSNERHYYAKLEAIKDIRDKTLSLEKLKVRIIKEVKLSDDEEK
CLEEYRKEMEHLLEEKMSHVEELRQIHADINDMENIIKQTKENQTRSFDM
ANRVYEEYLALKYQIDHMRRDYLGLSPLRDLHEEEGSPISKDRFQTNFLK
VAAQSAAAAAAAAAAAASVNQNSSLARPHARHPLMPEATVTALPSGGGQG
GVGGGGAAGGGGGSVGGGGGGGGNPGHAFMPPAPPGAGSAAAAAAAAAVR
LGKGDFSAPPPPPPPSNRLQQSPSIGIGHHPSFRSDFNVNLRQQPPPMKS
CLSCHQQIHRNAPICPLCKAKSRSRNPKKPKKKNN*

RE69682.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21819-PA 329 GF21819-PA 1..319 1..325 1239 86.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18214-PA 337 GG18214-PA 1..337 1..335 1746 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24201-PA 346 GH24201-PA 1..336 1..325 1243 85.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-PA 335 CG13001-PA 1..335 1..335 1750 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15222-PA 328 GI15222-PA 1..318 1..325 1216 85.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22723-PA 183 GL22723-PA 1..126 1..125 516 82.5 Plus
Dper\GL22734-PA 136 GL22734-PA 50..126 249..325 362 97.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11967-PA 326 GA11967-PA 1..316 1..325 1246 87.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13352-PA 335 GM13352-PA 1..335 1..335 1771 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19320-PA 328 GJ19320-PA 1..318 1..325 1265 87.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18524-PA 353 GK18524-PA 1..343 1..325 1225 83.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15631-PA 334 GE15631-PA 1..334 1..335 1677 96.1 Plus