Clone RE69770 Report

Search the DGRC for RE69770

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:697
Well:70
Vector:pFlc-1
Associated Gene/TranscriptE(spl)m5-HLH-RA
Protein status:RE69770.pep: gold
Preliminary Size:537
Sequenced Size:905

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6096 2001-12-13 Blastp of sequenced clone
CG6096 2002-01-01 Sim4 clustering to Release 2
CG6096 2003-01-01 Sim4 clustering to Release 3
HLHm5 2008-04-29 Release 5.5 accounting
HLHm5 2008-08-15 Release 5.9 accounting
HLHm5 2008-12-18 5.12 accounting

Clone Sequence Records

RE69770.complete Sequence

905 bp (905 high quality bases) assembled on 2001-12-13

GenBank Submission: AY070597

> RE69770.complete
GTCATTCGAGCAGCATCCTGCAAGCAGTTCAGATCAGCTCAGCACATTTC
TACAAATCTTCCAAAACAAAAAACACATTACAAAATGGCACCACAGAGCA
ACAACAGCACCACATTCGTCTCCAAGACCCAGCACTATTTGAAGGTGAAG
AAGCCCCTTTTGGAGCGCCAGCGTCGGGCCCGCATGAACAAGTGTTTGGA
CACCTTGAAGACCTTGGTGGCCGAGTTCCAGGGCGATGATGCCATCCTGC
GAATGGACAAGGCCGAGATGCTGGAGGCGGCACTCGTCTTCATGCGCAAA
CAGGTCGTCAAGCAGCAGGCGCCGGTCTCCCCACTTCCCATGGATAGCTT
CAAGAATGGCTACATGAACGCCGTCAGCGAGATCTCCCGTGTGATGGCCT
GCACTCCAGCCATGAGTGTGGATGTGGGCAAGACAGTGATGACCCATCTG
GGCGTCGAGTTCCAGCGCATGCTGCAGGCCGATCAGGTCCAGACTTCTGT
TACAACCTCCACCCCACGCCCACTCAGCCCCGCCTCCTCGGGATACCACA
GCGATAACGAGGACTCTCAATCCGCCGCCAGCCCCAAGCCAGTCGAAGAA
ACCATGTGGCGCCCTTGGTAAATCACCATCACCATCATCATCGACATCGA
ATCCAGTCTTCCAGCTGAAGAATCTTCTTCAGCATCGACATTGAATCCTG
TCTTCCACCAGCAACTTCTGCTGCAACGAATCATGTCTTCCAATTGAATC
GTTAACAATGTGATAACAGCTTTACCTAGATCATAAGCACACCTCAAGCT
TTATTAGTTTATTAAGGAATTTATTTTAAGAGAACAACACAACAGCTTTA
ATAGTTATAAAATACAAAACACACAAAAACCTTAAAAAAAAAAAAAAAAA
AAAAA

RE69770.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
HLHm5-RA 886 HLHm5-RA 1..884 2..885 4420 100 Plus
E(spl)-RA 546 E(spl)-RA 16..191 122..297 370 80.6 Plus
E(spl)-RA 546 E(spl)-RA 237..352 337..452 250 81 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21851846..21852726 882..2 4360 99.7 Minus
chr3R 27901430 chr3R 21863320..21863656 122..452 385 75.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:13:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26028852..26029735 885..2 4420 100 Minus
3R 32079331 3R 26040337..26040673 122..452 385 75.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25769683..25770566 885..2 4420 100 Minus
3R 31820162 3R 25781168..25781343 122..297 370 80.6 Plus
3R 31820162 3R 25781389..25781504 337..452 250 81 Plus
Blast to na_te.dros performed 2019-03-16 15:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 744..816 809..880 137 68.9 Plus
rover 7318 rover ROVER 7318bp 895..967 809..880 137 68.9 Plus

RE69770.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:12 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21851845..21852726 1..883 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:18 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm5-RA 1..537 85..621 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:13:17 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm5-RA 1..537 85..621 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:05:44 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m5-HLH-RA 1..537 85..621 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:37:25 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm5-RA 1..537 85..621 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:29 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m5-HLH-RA 1..537 85..621 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:44:28 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm5-RA 1..882 2..883 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:13:17 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm5-RA 1..882 2..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:44 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m5-HLH-RA 1..882 2..883 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:37:25 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm5-RA 1..882 2..883 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:29 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m5-HLH-RA 1..882 2..883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:12 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26028854..26029735 1..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:12 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26028854..26029735 1..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:12 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26028854..26029735 1..883 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:44 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21854576..21855457 1..883 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:15:05 Download gff for RE69770.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25769685..25770566 1..883 99   Minus

RE69770.hyp Sequence

Translation from 3 to 620

> RE69770.hyp
IRAASCKQFRSAQHISTNLPKQKTHYKMAPQSNNSTTFVSKTQHYLKVKK
PLLERQRRARMNKCLDTLKTLVAEFQGDDAILRMDKAEMLEAALVFMRKQ
VVKQQAPVSPLPMDSFKNGYMNAVSEISRVMACTPAMSVDVGKTVMTHLG
VEFQRMLQADQVQTSVTTSTPRPLSPASSGYHSDNEDSQSAASPKPVEET
MWRPW*

RE69770.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m5-HLH-PA 178 CG6096-PA 1..178 28..205 911 100 Plus
E(spl)m8-HLH-PA 179 CG8365-PA 3..179 38..205 521 60.9 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 7..186 39..205 304 39.8 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 9..205 39..205 266 34.5 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 7..195 39..205 256 34.2 Plus

RE69770.pep Sequence

Translation from 84 to 620

> RE69770.pep
MAPQSNNSTTFVSKTQHYLKVKKPLLERQRRARMNKCLDTLKTLVAEFQG
DDAILRMDKAEMLEAALVFMRKQVVKQQAPVSPLPMDSFKNGYMNAVSEI
SRVMACTPAMSVDVGKTVMTHLGVEFQRMLQADQVQTSVTTSTPRPLSPA
SSGYHSDNEDSQSAASPKPVEETMWRPW*

RE69770.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18222-PA 182 GF18222-PA 1..182 1..178 822 86.8 Plus
Dana\GF16802-PA 180 GF16802-PA 3..180 11..178 544 61.7 Plus
Dana\GF16801-PA 180 GF16801-PA 7..180 12..178 291 41.7 Plus
Dana\GF16795-PA 182 GF16795-PA 8..182 11..178 251 36 Plus
Dana\GF18225-PA 200 GF18225-PA 7..196 12..178 247 34.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12204-PA 178 GG12204-PA 1..178 1..178 927 97.2 Plus
Dere\GG11459-PA 179 GG11459-PA 3..179 11..178 534 59.2 Plus
Dere\GG11458-PA 186 GG11458-PA 7..186 12..178 287 38.4 Plus
Dere\GG12207-PA 195 GG12207-PA 7..195 12..178 251 34.2 Plus
Dere\GG11450-PA 205 GG11450-PA 9..205 12..178 248 33.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18145-PA 187 GH18145-PA 1..187 1..178 742 76.2 Plus
Dgri\GH19459-PA 193 GH19459-PA 3..193 11..178 508 55.4 Plus
Dgri\GH19458-PA 207 GH19458-PA 7..207 12..178 292 35.6 Plus
Dgri\GH18148-PA 210 GH18148-PA 7..210 12..178 238 33.3 Plus
Dgri\GH19452-PA 217 GH19452-PA 11..149 14..148 238 41.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m5-HLH-PA 178 CG6096-PA 1..178 1..178 911 100 Plus
E(spl)m8-HLH-PA 179 CG8365-PA 3..179 11..178 521 60.9 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 7..186 12..178 304 39.8 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 9..205 12..178 266 34.5 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 7..195 12..178 256 34.2 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 8..173 11..178 235 33.9 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 5..171 12..154 194 33.9 Plus
h-PB 337 CG6494-PB 36..182 23..167 154 30.8 Plus
h-PA 337 CG6494-PA 36..182 23..167 154 30.8 Plus
dpn-PA 435 CG8704-PA 42..204 20..165 147 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22907-PA 183 GI22907-PA 1..183 1..178 718 81.1 Plus
Dmoj\GI24693-PA 173 GI24693-PA 3..173 11..178 559 62.4 Plus
Dmoj\GI21362-PA 97 GI21362-PA 1..97 90..178 310 74.2 Plus
Dmoj\GI24692-PA 207 GI24692-PA 8..207 13..178 264 34.2 Plus
Dmoj\GI24686-PA 217 GI24686-PA 9..217 12..178 247 34.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22018-PA 186 GL22018-PA 1..186 1..178 745 82.4 Plus
Dper\GL21823-PA 186 GL21823-PA 3..186 11..178 492 59.1 Plus
Dper\GL21815-PA 214 GL21815-PA 2..214 5..178 256 33.8 Plus
Dper\GL21813-PA 188 GL21813-PA 8..188 11..178 240 33.2 Plus
Dper\GL22021-PA 200 GL22021-PA 7..200 12..178 240 34 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19349-PA 187 GA19349-PA 1..187 1..178 739 81.5 Plus
Dpse\GA21022-PA 186 GA21022-PA 3..186 11..178 493 59.1 Plus
Dpse\GA20996-PA 214 GA20996-PA 2..214 5..178 256 33.8 Plus
Dpse\GA20991-PA 188 GA20991-PA 8..188 11..178 240 33.2 Plus
Dpse\GA13073-PA 200 GA13073-PA 7..200 12..178 240 34 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10203-PA 178 GM10203-PA 1..178 1..178 930 97.8 Plus
Dsec\GM10301-PA 179 GM10301-PA 3..179 11..178 534 58.1 Plus
Dsec\GM10299-PA 186 GM10299-PA 7..186 12..178 282 38.4 Plus
Dsec\GM10206-PA 195 GM10206-PA 7..195 12..178 258 35.2 Plus
Dsec\GM10294-PA 205 GM10294-PA 9..205 12..178 251 33.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\HLHm5-PA 178 GD18153-PA 1..178 1..178 940 98.9 Plus
Dsim\E(spl)-PA 179 GD21264-PA 3..179 11..178 535 59.8 Plus
Dsim\HLHm7-PA 186 GD21263-PA 7..186 12..178 284 38.4 Plus
Dsim\HLHmbeta-PA 195 GD18157-PA 7..195 12..178 251 34.2 Plus
Dsim\HLHmgamma-PA 205 GD21258-PA 9..205 12..178 251 33.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23319-PA 184 GJ23319-PA 1..184 1..178 759 79 Plus
Dvir\GJ23910-PA 182 GJ23910-PA 3..182 11..178 513 61 Plus
Dvir\GJ23909-PA 197 GJ23909-PA 7..197 12..178 274 36.1 Plus
Dvir\GJ23903-PA 217 GJ23903-PA 9..149 12..148 247 41.6 Plus
Dvir\GJ23323-PA 209 GJ23323-PA 7..209 12..178 243 33 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12804-PA 183 GK12804-PA 1..183 1..178 782 84.2 Plus
Dwil\GK14460-PA 191 GK14460-PA 3..191 11..178 510 55.6 Plus
Dwil\GK14459-PA 200 GK14459-PA 7..200 12..178 280 36.6 Plus
Dwil\GK14455-PA 209 GK14455-PA 9..209 12..178 251 35.9 Plus
Dwil\GK12809-PA 201 GK12809-PA 7..201 12..178 235 33.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10648-PA 179 GE10648-PA 1..179 1..178 922 97.2 Plus
Dyak\GE23650-PA 179 GE23650-PA 3..179 11..178 536 59.8 Plus
Dyak\HLHm7-PA 186 GE23649-PA 7..186 12..178 287 38.4 Plus
Dyak\HLHmbeta-PA 195 GE10652-PA 7..195 12..178 258 35.2 Plus
Dyak\HLHmgamma-PA 205 GE23644-PA 9..205 12..178 250 33.5 Plus