Clone RE69862 Report

Search the DGRC for RE69862

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:698
Well:62
Vector:pFlc-1
Associated Gene/Transcriptmetl-RA
Protein status:RE69862.pep: gold
Sequenced Size:1095

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
metl-RA 2010-12-06 Manual selection by Sue Celniker

Clone Sequence Records

RE69862.complete Sequence

1095 bp assembled on 2011-03-18

GenBank Submission: BT126162.1

> RE69862.complete
GTTTACCAAAATATATAATTTGGATCGCACAAACAGGTGATATATACCGT
CATTCCTGTCCGATATGAGTGACAACCCCGCCGCGGAGAACGAAAAGCGA
CCGCAGTTCGGAACCCGCCTGCTCACGGATGCTGACGACGTCTTCAAGCA
CAATGCTTGGGACCACGTGCAATGGGATGAAGAGCAGGAACTGGCCGCGA
AGGCGGCTGTAGCCAAGAATTCGACCTCAAAGATGGAAGCGGAGCAGAAG
GAGCGATTTCAGACAGACGCCCCCAAGTTTTGGGATTCCTTCTACGGCAT
TCACGACAACCGCTTCTTCAAGGATCGCCACTGGCTGTTTACGGAGTTCC
CCGAACTAGCTCCTCTGGCGGCGGATTCGGCGGTACTGCAACCACGTAGC
ATTTTCGAACTGGGCTGTGGAGTAGGAAACACAATTTTACCCCTTCTACA
GTACAGCTCTGAACCGCAGCTCAAGGTTTTCGGATGTGACTTCTCCGCCC
GGGCCATTGAAATCCTGCGAAGCCAACGGCAGTTCGACGAGAAGCGCTGC
GAGGTGTTTGTCATGGATGCCACGCTGGATCATTGGCAGGTGCCCTTCGA
GGAAAACTCACAGGACATTATTGTGATGATTTTTGTGCTGTCCGCAATTG
AGCCAAAGAAAATGCAGCGGGTATTGGACAATTGCTATCGCTACCTGCGT
CCCGGTGGCTTGCTCCTCTTCCGCGACTACGGACGATACGACCTGGCACA
GCTGCGCTTCAAGAGCGGCAAGTGTATGGAGGACAACTTCTACGTGCGAG
GCGACGGCACCATGGTGTACTTCTTCACGGAGGAAGAACTGCGGGGTATG
ATGACTCAAGCGGGGCTGCAGGAGGAGCAGCTCATTGTGGACCGAAGACT
GCAAGTTAATCGCTGTCGCGGCTTGAAAATGTACCGCGTGTGGATTCAGA
CAAAGTTCAGGAAACCGCTTTAAATCAATTTAGACGAATAGTTCTGTGCA
TTTTAAACCTTGTTCAAATCAATTGATATAATTATTTACACGATATATTT
AAAAATACAAAGTTAAAACTTCAAACTGTAAAAAAAAAAAAAAAA

RE69862.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1637535..1638455 1079..159 4530 99.5 Minus
chr3L 24539361 chr3L 1638641..1638800 160..1 725 96.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1637933..1638855 1081..159 4615 100 Minus
3L 28110227 3L 1639041..1639200 160..1 800 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1637933..1638855 1081..159 4615 100 Minus
3L 28103327 3L 1639041..1639200 160..1 800 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:38:03 has no hits.

RE69862.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:39:15 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1638642..1638800 1..159 96   Minus
chr3L 1637535..1638454 160..1079 99 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:29 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RA 1..909 65..973 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:58:15 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RA 1..909 65..973 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:30:30 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RA 1..909 65..973 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:29 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RA 35..1106 1..1072 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:58:15 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RA 36..1107 1..1072 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:30 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RA 36..1107 1..1072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:15 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1637935..1638854 160..1079 100 <- Minus
3L 1639042..1639200 1..159 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:15 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1637935..1638854 160..1079 100 <- Minus
3L 1639042..1639200 1..159 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:15 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1637935..1638854 160..1079 100 <- Minus
3L 1639042..1639200 1..159 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:58:15 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1637935..1638854 160..1079 100 <- Minus
arm_3L 1639042..1639200 1..159 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:23 Download gff for RE69862.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1637935..1638854 160..1079 100 <- Minus
3L 1639042..1639200 1..159 100   Minus

RE69862.pep Sequence

Translation from 64 to 972

> RE69862.pep
MSDNPAAENEKRPQFGTRLLTDADDVFKHNAWDHVQWDEEQELAAKAAVA
KNSTSKMEAEQKERFQTDAPKFWDSFYGIHDNRFFKDRHWLFTEFPELAP
LAADSAVLQPRSIFELGCGVGNTILPLLQYSSEPQLKVFGCDFSARAIEI
LRSQRQFDEKRCEVFVMDATLDHWQVPFEENSQDIIVMIFVLSAIEPKKM
QRVLDNCYRYLRPGGLLLFRDYGRYDLAQLRFKSGKCMEDNFYVRGDGTM
VYFFTEEELRGMMTQAGLQEEQLIVDRRLQVNRCRGLKMYRVWIQTKFRK
PL*

RE69862.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24018-PA 319 GF24018-PA 31..319 16..302 1347 87.5 Plus
Dana\GF19776-PA 77 GF19776-PA 1..74 227..300 137 39.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14580-PA 302 GG14580-PA 1..302 1..302 1569 96.7 Plus
Dere\GG21815-PA 283 GG21815-PA 40..280 64..300 438 43 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15520-PA 338 GH15520-PA 11..338 6..302 1246 75.4 Plus
Dgri\GH21487-PA 263 GH21487-PA 16..258 64..300 494 41.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
metl-PA 302 CG13929-PA 1..302 1..302 1606 100 Plus
metl-PB 325 CG13929-PB 31..325 8..302 1495 95.6 Plus
CG34195-PA 283 CG34195-PA 27..280 51..300 480 39.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16799-PA 342 GI16799-PA 12..339 6..302 1270 76 Plus
Dmoj\GI19964-PA 278 GI19964-PA 36..274 64..300 488 41.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20731-PA 337 GL20731-PA 1..333 1..302 1349 77.3 Plus
Dper\GL17216-PA 291 GL17216-PA 16..288 40..300 494 39.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12634-PA 337 GA12634-PA 1..333 1..302 1345 77 Plus
Dpse\GA25046-PA 291 GA25046-PA 16..288 40..300 493 39.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14194-PA 302 GM14194-PA 1..302 1..302 1578 96.4 Plus
Dsec\GM21817-PA 283 GM21817-PA 40..283 64..302 424 41.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17608-PA 302 GD17608-PA 1..302 1..302 1579 96.4 Plus
Dsim\GD11308-PA 283 GD11308-PA 40..280 64..300 436 41.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12543-PA 338 GJ12543-PA 11..338 6..302 1276 76 Plus
Dvir\GJ17971-PA 143 GJ17971-PA 3..139 164..300 279 43.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23661-PA 348 GK23661-PA 1..348 1..302 1263 70.4 Plus
Dwil\GK23259-PA 294 GK23259-PA 11..293 41..300 481 36.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20940-PA 302 GE20940-PA 1..302 1..302 1561 96 Plus
Dyak\GE11892-PA 283 GE11892-PA 40..280 64..300 429 41.4 Plus

RE69862.hyp Sequence

Translation from 64 to 972

> RE69862.hyp
MSDNPAAENEKRPQFGTRLLTDADDVFKHNAWDHVQWDEEQELAAKAAVA
KNSTSKMEAEQKERFQTDAPKFWDSFYGIHDNRFFKDRHWLFTEFPELAP
LAADSAVLQPRSIFELGCGVGNTILPLLQYSSEPQLKVFGCDFSARAIEI
LRSQRQFDEKRCEVFVMDATLDHWQVPFEENSQDIIVMIFVLSAIEPKKM
QRVLDNCYRYLRPGGLLLFRDYGRYDLAQLRFKSGKCMEDNFYVRGDGTM
VYFFTEEELRGMMTQAGLQEEQLIVDRRLQVNRCRGLKMYRVWIQTKFRK
PL*

RE69862.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
metl-PA 302 CG13929-PA 1..302 1..302 1606 100 Plus
metl-PB 325 CG13929-PB 31..325 8..302 1495 95.6 Plus
CG34195-PA 283 CG34195-PA 27..280 51..300 480 39.7 Plus