Clone RE69884 Report

Search the DGRC for RE69884

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:698
Well:84
Vector:pFlc-1
Associated Gene/TranscriptPex13-RA
Protein status:RE69884.pep: gold
Preliminary Size:1576
Sequenced Size:1778

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4663 2002-10-13 Blastp of sequenced clone
CG4663 2003-01-01 Sim4 clustering to Release 3
CG4663 2008-04-29 Release 5.5 accounting
CG4663 2008-08-15 Release 5.9 accounting
CG4663 2008-12-18 5.12 accounting

Clone Sequence Records

RE69884.complete Sequence

1778 bp (1778 high quality bases) assembled on 2002-10-13

GenBank Submission: BT001726

> RE69884.complete
AATCTAGCTAGAAATAGATAAAACGGTACAACTGCTAAAATTGATTAATT
GTTAAAACAAAAATTTCGTCAAAGTTCGTTGATAAGACTCTCCTGGAGTT
CCGAGACCATAACAACGAGCAATTCCGCACGAAGCGGTCACTTACCGTCC
GTCCAAATCAGTGCGAAAAAGCGACTATCGAGCCGATCGTACAAAAGCAA
CTACCGTGCCGTGGGGTAAAGTTCACAGCACTTTTCCTTTTGTCCGAAGT
CGAAGTCGGATTTTGTCACCATGGTCGACAACAATAACCTACGCAGTGCG
GTGATCAGCGATGCCCCGCTACTGCCGCCCTCGAGCAGCATCGGAGTGGG
CGTTTCAAGCGGCGGAGGATATCCGCCGGAAGCGGTGCTGCGTACTCCGT
ATGGCAATGTTAGGGCTCTGCCCGGACCGGCGCAGCCCCCTCCTCTGCCG
CAATCCCCATTCCAGCAGACACAACAGTACGGTGGTTTCGGCAGCGGGTA
CGGCGGAAACAACTACGGACTCGGGGGTTATGGTGGTTTCAACAGTGGCG
CCTTTGGATATGGTGGACTGGGTGGATTTGGAAGTGGACTTGGAAGTGGA
TTTGGAAGTGGATACGGGTATGGAGGTGGCTATGGCGGAGGCTATGGTGG
AGGCTTCGGCGGTGGGTACAACAGATTTGGAGCAATGGGTGAAAACGATG
CGGAGCAGCGGTTCATTTATATGGCAGAGTCCAGCTCGCGCCCGGCCTTT
CAGAGCATCGAATCTCTGGTGTCGGCCATCGGCAACATCGCCTCTATGCT
GGACTCCACATTCTTCGCGCTGACCAGCTCGTTTCGGGCCATTCTCGGCG
TGGCCACGAACTTTGTACGGCTGCGAAGTGTGTTTGCCCAGTTTTGGACC
ACGTTTGCCATATTCCGCGGTCTAAACTGGATGTACAGAAAGATTCTCTA
TTGGCTGCGCCTATCGAACCTGGACCCTTCATCGGCAGCCTTTAAGAAGG
CCTTTGCCGAGGCACTGAACGAAAACAACGGCCAGGCGAGAGGAGCACCT
AATGTGCCGCGAAAGGGCAACTCACCCTGGCCGGTGCTGGCCTTTATCAG
CTTCATCTTTACTGCTCCCTACTTGATCATGAAGCTGCTGGGAACCGTGA
CGAACACCGCCCAGGAGGAAGCCCGTAATCCGGCCAAGTGGACTGCGCCG
ATTCAGACTCAGGCCGTTTACGAATTCGTGGCTCGCAGCCCGAGCGAGCT
TTCGCTGCGCGCCGGCCAAATGCTACATGTGGCTCCCCGCGACATCCAGC
AGACGCTCAATCTGCTGAACACCGGCTGGGCTCTAGCCACCACCAACGGA
CAGACCTCCGGCATCATTCCAATTAGTTATGTGAAATCGCCACAACAAAT
GCGCCAAGAGATGCAGGATCAAACCAAGCCCGCTCAGCCACAACCCGAAC
TAATGAATTTGTCCGCGGGAGCCTTTGCGTCTCCTCCGTTGGAGCAGCAA
ATGAACTACGACTTTAACCTGGCTGCCCAGCAGCAGGCGCCTTTGGGACC
GCCCTCAACGACGTCAGCTGTGCTGGGCGAGGGATTCGCCTGAGCCGACC
AAATCCTCGGAGAATTAGCTTAAGTTTAAGTTACGTTCCGTTCAGCTTCT
GTATATGTACGTCCACGTCCCTGTATTTTAGGTTAGCTTCCGCCTTTTGT
ATATTTCCATTTAGTTGTAAATGTTTATTAGCCAGCGATCCCAATGAAAG
TAAACATAAACCAAAAAAAAAAAAAAAA

RE69884.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4663-RA 1961 CG4663-RA 94..1856 1..1763 8815 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9116643..9117584 942..1 4665 99.7 Minus
chr2R 21145070 chr2R 9115632..9116224 1762..1170 2950 99.8 Minus
chr2R 21145070 chr2R 9116359..9116588 1171..942 1150 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:13:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13229287..13230228 942..1 4710 100 Minus
2R 25286936 2R 13228275..13228868 1763..1170 2970 100 Minus
2R 25286936 2R 13229003..13229232 1171..942 1150 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13230486..13231427 942..1 4710 100 Minus
2R 25260384 2R 13229474..13230067 1763..1170 2970 100 Minus
2R 25260384 2R 13230202..13230431 1171..942 1150 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:12:59 has no hits.

RE69884.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:14:15 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9115632..9116222 1172..1762 99 <- Minus
chr2R 9116359..9116588 942..1171 100 <- Minus
chr2R 9116644..9117584 1..941 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:20 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
CG4663-RA 1..1323 271..1593 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:11:04 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
pex13-RA 1..1323 271..1593 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:04:27 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
Pex13-RA 1..1323 271..1593 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:01:54 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
CG4663-RA 1..1323 271..1593 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:01 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
Pex13-RA 1..1323 271..1593 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:32:38 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
CG4663-RA 1..1762 1..1762 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:11:03 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
pex13-RA 1..1762 1..1762 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:04:27 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
Pex13-RA 7..1768 1..1762 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:01:55 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
CG4663-RA 1..1762 1..1762 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:01 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
Pex13-RA 7..1768 1..1762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:15 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13228276..13228866 1172..1762 100 <- Minus
2R 13229003..13229232 942..1171 100 <- Minus
2R 13229288..13230228 1..941 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:15 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13228276..13228866 1172..1762 100 <- Minus
2R 13229003..13229232 942..1171 100 <- Minus
2R 13229288..13230228 1..941 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:15 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13228276..13228866 1172..1762 100 <- Minus
2R 13229003..13229232 942..1171 100 <- Minus
2R 13229288..13230228 1..941 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:04:27 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9115781..9116371 1172..1762 100 <- Minus
arm_2R 9116508..9116737 942..1171 100 <- Minus
arm_2R 9116793..9117733 1..941 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:33:35 Download gff for RE69884.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13229475..13230065 1172..1762 100 <- Minus
2R 13230202..13230431 942..1171 100 <- Minus
2R 13230487..13231427 1..941 100   Minus

RE69884.pep Sequence

Translation from 270 to 1592

> RE69884.pep
MVDNNNLRSAVISDAPLLPPSSSIGVGVSSGGGYPPEAVLRTPYGNVRAL
PGPAQPPPLPQSPFQQTQQYGGFGSGYGGNNYGLGGYGGFNSGAFGYGGL
GGFGSGLGSGFGSGYGYGGGYGGGYGGGFGGGYNRFGAMGENDAEQRFIY
MAESSSRPAFQSIESLVSAIGNIASMLDSTFFALTSSFRAILGVATNFVR
LRSVFAQFWTTFAIFRGLNWMYRKILYWLRLSNLDPSSAAFKKAFAEALN
ENNGQARGAPNVPRKGNSPWPVLAFISFIFTAPYLIMKLLGTVTNTAQEE
ARNPAKWTAPIQTQAVYEFVARSPSELSLRAGQMLHVAPRDIQQTLNLLN
TGWALATTNGQTSGIIPISYVKSPQQMRQEMQDQTKPAQPQPELMNLSAG
AFASPPLEQQMNYDFNLAAQQQAPLGPPSTTSAVLGEGFA*

RE69884.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12959-PA 425 GF12959-PA 114..425 129..440 1308 86.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22510-PA 440 GG22510-PA 1..440 1..440 1645 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21168-PA 405 GH21168-PA 97..405 134..440 1200 77.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Pex13-PA 440 CG4663-PA 1..440 1..440 2310 100 Plus
CG14191-PA 193 CG14191-PA 40..109 71..133 189 55.6 Plus
CG9269-PA 146 CG9269-PA 49..134 70..140 186 50 Plus
CG14191-PA 193 CG14191-PA 51..132 72..140 185 49.4 Plus
CG15597-PB 149 CG15597-PB 28..98 74..133 184 54.2 Plus
TwdlT-PA 286 CG5812-PA 62..137 71..151 183 53.7 Plus
TwdlT-PA 286 CG5812-PA 17..116 60..140 182 44.6 Plus
CG14191-PA 193 CG14191-PA 91..174 71..138 177 43.3 Plus
CG15597-PB 149 CG15597-PB 38..132 71..140 177 46.4 Plus
CG8157-PB 113 CG8157-PB 31..100 69..137 175 56.9 Plus
CG8157-PA 113 CG8157-PA 31..100 69..137 175 56.9 Plus
CG14327-PB 153 CG14327-PB 46..145 66..156 173 43.7 Plus
CG14327-PA 153 CG14327-PA 46..145 66..156 173 43.7 Plus
CG9757-PB 127 CG9757-PB 67..127 70..131 172 56.5 Plus
CG9757-PA 127 CG9757-PA 67..127 70..131 172 56.5 Plus
CG8157-PB 113 CG8157-PB 23..90 71..140 169 56.3 Plus
CG8157-PA 113 CG8157-PA 23..90 71..140 169 56.3 Plus
CG14191-PA 193 CG14191-PA 103..181 71..140 168 51.9 Plus
sqd-PD 178 CG16901-PD 88..166 70..147 166 50 Plus
CG17108-PA 342 CG17108-PA 210..297 70..140 166 45.5 Plus
sqd-PB 344 CG16901-PB 254..332 70..147 166 50 Plus
CG5778-PC 117 CG5778-PC 35..110 71..137 164 53.9 Plus
CG5778-PA 117 CG5778-PA 35..110 71..137 164 53.9 Plus
CG7294-PA 127 CG7294-PA 17..122 59..171 164 41.7 Plus
CG5070-PA 209 CG5070-PA 34..103 71..133 164 46.3 Plus
CG5172-PD 172 CG5172-PD 26..93 71..140 163 51.4 Plus
CG9757-PB 127 CG9757-PB 53..118 70..140 162 50 Plus
CG9757-PA 127 CG9757-PA 53..118 70..140 162 50 Plus
CG5172-PC 106 CG5172-PC 26..95 71..142 162 50 Plus
CG17108-PA 342 CG17108-PA 166..289 25..140 162 36.8 Plus
Cpr47Ef-PC 612 CG13214-PC 399..522 27..140 162 41.1 Plus
Cpr47Ef-PC 612 CG13214-PC 305..362 74..132 160 59.3 Plus
Cpr47Ef-PD 601 CG13214-PD 305..362 74..132 160 59.3 Plus
Cpr47Ef-PC 612 CG13214-PC 332..462 25..140 159 39.7 Plus
Cpr47Ef-PD 601 CG13214-PD 332..462 25..140 159 39.7 Plus
CG5070-PA 209 CG5070-PA 39..112 72..134 158 49.4 Plus
CG17108-PA 342 CG17108-PA 133..194 72..131 157 56.5 Plus
CG7299-PC 177 CG7299-PC 49..132 68..144 157 47.6 Plus
CG7299-PA 177 CG7299-PA 49..132 68..144 157 47.6 Plus
Cpr47Ef-PC 612 CG13214-PC 251..331 71..140 157 50.6 Plus
Cpr47Ef-PD 601 CG13214-PD 251..331 71..140 157 50.6 Plus
CG17108-PA 342 CG17108-PA 126..193 71..140 156 51.4 Plus
Cpr47Ef-PC 612 CG13214-PC 206..312 43..140 156 41.1 Plus
Cpr47Ef-PD 601 CG13214-PD 206..312 43..140 156 41.1 Plus
caz-PB 399 CG3606-PB 5..146 25..173 155 34.2 Plus
CG9757-PB 127 CG9757-PB 70..127 69..127 154 56.5 Plus
CG9757-PA 127 CG9757-PA 70..127 69..127 154 56.5 Plus
CG7296-PB 161 CG7296-PB 49..152 72..169 154 41.9 Plus
CG7296-PA 161 CG7296-PA 49..152 72..169 154 41.9 Plus
CG15597-PB 149 CG15597-PB 42..139 71..133 153 36.7 Plus
CG17108-PA 342 CG17108-PA 89..180 63..140 153 43.5 Plus
CG17108-PA 342 CG17108-PA 246..321 71..132 153 46.1 Plus
CG7296-PB 161 CG7296-PB 36..113 71..140 151 47.5 Plus
CG7296-PA 161 CG7296-PA 36..113 71..140 151 47.5 Plus
Edg91-PB 151 CG7539-PB 28..96 71..137 151 51.4 Plus
Edg91-PA 159 CG7539-PA 36..104 71..137 151 51.4 Plus
sqd-PD 178 CG16901-PD 81..150 69..140 149 52 Plus
Listericin-PA 121 CG9080-PA 51..104 73..132 149 55 Plus
CG8157-PB 113 CG8157-PB 47..113 70..136 148 50.7 Plus
CG8157-PA 113 CG8157-PA 47..113 70..136 148 50.7 Plus
CG13217-PA 113 CG13217-PA 54..100 83..131 146 58 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18763-PA 402 GI18763-PA 96..402 134..440 1303 81.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10505-PA 426 GL10505-PA 1..426 1..440 1510 74.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18339-PA 426 GA18339-PA 1..426 1..440 1510 75.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20296-PA 440 GM20296-PA 1..440 1..440 2204 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25777-PA 440 GD25777-PA 1..440 1..440 2213 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21787-PA 400 GJ21787-PA 95..400 135..440 1315 82 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21322-PA 430 GK21322-PA 117..429 134..439 1257 81.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13380-PA 436 GE13380-PA 1..436 1..440 1562 93.9 Plus

RE69884.hyp Sequence

Translation from 270 to 1592

> RE69884.hyp
MVDNNNLRSAVISDAPLLPPSSSIGVGVSSGGGYPPEAVLRTPYGNVRAL
PGPAQPPPLPQSPFQQTQQYGGFGSGYGGNNYGLGGYGGFNSGAFGYGGL
GGFGSGLGSGFGSGYGYGGGYGGGYGGGFGGGYNRFGAMGENDAEQRFIY
MAESSSRPAFQSIESLVSAIGNIASMLDSTFFALTSSFRAILGVATNFVR
LRSVFAQFWTTFAIFRGLNWMYRKILYWLRLSNLDPSSAAFKKAFAEALN
ENNGQARGAPNVPRKGNSPWPVLAFISFIFTAPYLIMKLLGTVTNTAQEE
ARNPAKWTAPIQTQAVYEFVARSPSELSLRAGQMLHVAPRDIQQTLNLLN
TGWALATTNGQTSGIIPISYVKSPQQMRQEMQDQTKPAQPQPELMNLSAG
AFASPPLEQQMNYDFNLAAQQQAPLGPPSTTSAVLGEGFA*

RE69884.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pex13-PA 440 CG4663-PA 1..440 1..440 2310 100 Plus
CG14191-PA 193 CG14191-PA 40..109 71..133 189 55.6 Plus
CG9269-PA 146 CG9269-PA 49..134 70..140 186 50 Plus
CG14191-PA 193 CG14191-PA 51..132 72..140 185 49.4 Plus
CG15597-PB 149 CG15597-PB 28..98 74..133 184 54.2 Plus
TwdlT-PA 286 CG5812-PA 62..137 71..151 183 53.7 Plus
CG14191-PA 193 CG14191-PA 91..174 71..138 177 43.3 Plus
CG15597-PB 149 CG15597-PB 38..132 71..140 177 46.4 Plus
CG14191-PA 193 CG14191-PA 103..181 71..140 168 51.9 Plus
CG15597-PB 149 CG15597-PB 42..139 71..133 153 36.7 Plus