BDGP Sequence Production Resources |
Search the DGRC for RE69884
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 698 |
Well: | 84 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pex13-RA |
Protein status: | RE69884.pep: gold |
Preliminary Size: | 1576 |
Sequenced Size: | 1778 |
Gene | Date | Evidence |
---|---|---|
CG4663 | 2002-10-13 | Blastp of sequenced clone |
CG4663 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4663 | 2008-04-29 | Release 5.5 accounting |
CG4663 | 2008-08-15 | Release 5.9 accounting |
CG4663 | 2008-12-18 | 5.12 accounting |
1778 bp (1778 high quality bases) assembled on 2002-10-13
GenBank Submission: BT001726
> RE69884.complete AATCTAGCTAGAAATAGATAAAACGGTACAACTGCTAAAATTGATTAATT GTTAAAACAAAAATTTCGTCAAAGTTCGTTGATAAGACTCTCCTGGAGTT CCGAGACCATAACAACGAGCAATTCCGCACGAAGCGGTCACTTACCGTCC GTCCAAATCAGTGCGAAAAAGCGACTATCGAGCCGATCGTACAAAAGCAA CTACCGTGCCGTGGGGTAAAGTTCACAGCACTTTTCCTTTTGTCCGAAGT CGAAGTCGGATTTTGTCACCATGGTCGACAACAATAACCTACGCAGTGCG GTGATCAGCGATGCCCCGCTACTGCCGCCCTCGAGCAGCATCGGAGTGGG CGTTTCAAGCGGCGGAGGATATCCGCCGGAAGCGGTGCTGCGTACTCCGT ATGGCAATGTTAGGGCTCTGCCCGGACCGGCGCAGCCCCCTCCTCTGCCG CAATCCCCATTCCAGCAGACACAACAGTACGGTGGTTTCGGCAGCGGGTA CGGCGGAAACAACTACGGACTCGGGGGTTATGGTGGTTTCAACAGTGGCG CCTTTGGATATGGTGGACTGGGTGGATTTGGAAGTGGACTTGGAAGTGGA TTTGGAAGTGGATACGGGTATGGAGGTGGCTATGGCGGAGGCTATGGTGG AGGCTTCGGCGGTGGGTACAACAGATTTGGAGCAATGGGTGAAAACGATG CGGAGCAGCGGTTCATTTATATGGCAGAGTCCAGCTCGCGCCCGGCCTTT CAGAGCATCGAATCTCTGGTGTCGGCCATCGGCAACATCGCCTCTATGCT GGACTCCACATTCTTCGCGCTGACCAGCTCGTTTCGGGCCATTCTCGGCG TGGCCACGAACTTTGTACGGCTGCGAAGTGTGTTTGCCCAGTTTTGGACC ACGTTTGCCATATTCCGCGGTCTAAACTGGATGTACAGAAAGATTCTCTA TTGGCTGCGCCTATCGAACCTGGACCCTTCATCGGCAGCCTTTAAGAAGG CCTTTGCCGAGGCACTGAACGAAAACAACGGCCAGGCGAGAGGAGCACCT AATGTGCCGCGAAAGGGCAACTCACCCTGGCCGGTGCTGGCCTTTATCAG CTTCATCTTTACTGCTCCCTACTTGATCATGAAGCTGCTGGGAACCGTGA CGAACACCGCCCAGGAGGAAGCCCGTAATCCGGCCAAGTGGACTGCGCCG ATTCAGACTCAGGCCGTTTACGAATTCGTGGCTCGCAGCCCGAGCGAGCT TTCGCTGCGCGCCGGCCAAATGCTACATGTGGCTCCCCGCGACATCCAGC AGACGCTCAATCTGCTGAACACCGGCTGGGCTCTAGCCACCACCAACGGA CAGACCTCCGGCATCATTCCAATTAGTTATGTGAAATCGCCACAACAAAT GCGCCAAGAGATGCAGGATCAAACCAAGCCCGCTCAGCCACAACCCGAAC TAATGAATTTGTCCGCGGGAGCCTTTGCGTCTCCTCCGTTGGAGCAGCAA ATGAACTACGACTTTAACCTGGCTGCCCAGCAGCAGGCGCCTTTGGGACC GCCCTCAACGACGTCAGCTGTGCTGGGCGAGGGATTCGCCTGAGCCGACC AAATCCTCGGAGAATTAGCTTAAGTTTAAGTTACGTTCCGTTCAGCTTCT GTATATGTACGTCCACGTCCCTGTATTTTAGGTTAGCTTCCGCCTTTTGT ATATTTCCATTTAGTTGTAAATGTTTATTAGCCAGCGATCCCAATGAAAG TAAACATAAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4663-RA | 1961 | CG4663-RA | 94..1856 | 1..1763 | 8815 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9116643..9117584 | 942..1 | 4665 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 9115632..9116224 | 1762..1170 | 2950 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 9116359..9116588 | 1171..942 | 1150 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13229287..13230228 | 942..1 | 4710 | 100 | Minus |
2R | 25286936 | 2R | 13228275..13228868 | 1763..1170 | 2970 | 100 | Minus |
2R | 25286936 | 2R | 13229003..13229232 | 1171..942 | 1150 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13230486..13231427 | 942..1 | 4710 | 100 | Minus |
2R | 25260384 | 2R | 13229474..13230067 | 1763..1170 | 2970 | 100 | Minus |
2R | 25260384 | 2R | 13230202..13230431 | 1171..942 | 1150 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9115632..9116222 | 1172..1762 | 99 | <- | Minus |
chr2R | 9116359..9116588 | 942..1171 | 100 | <- | Minus |
chr2R | 9116644..9117584 | 1..941 | 95 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4663-RA | 1..1323 | 271..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pex13-RA | 1..1323 | 271..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex13-RA | 1..1323 | 271..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4663-RA | 1..1323 | 271..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex13-RA | 1..1323 | 271..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4663-RA | 1..1762 | 1..1762 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pex13-RA | 1..1762 | 1..1762 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex13-RA | 7..1768 | 1..1762 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4663-RA | 1..1762 | 1..1762 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex13-RA | 7..1768 | 1..1762 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13228276..13228866 | 1172..1762 | 100 | <- | Minus |
2R | 13229003..13229232 | 942..1171 | 100 | <- | Minus |
2R | 13229288..13230228 | 1..941 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13228276..13228866 | 1172..1762 | 100 | <- | Minus |
2R | 13229003..13229232 | 942..1171 | 100 | <- | Minus |
2R | 13229288..13230228 | 1..941 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13228276..13228866 | 1172..1762 | 100 | <- | Minus |
2R | 13229003..13229232 | 942..1171 | 100 | <- | Minus |
2R | 13229288..13230228 | 1..941 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9115781..9116371 | 1172..1762 | 100 | <- | Minus |
arm_2R | 9116508..9116737 | 942..1171 | 100 | <- | Minus |
arm_2R | 9116793..9117733 | 1..941 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13229475..13230065 | 1172..1762 | 100 | <- | Minus |
2R | 13230202..13230431 | 942..1171 | 100 | <- | Minus |
2R | 13230487..13231427 | 1..941 | 100 | Minus |
Translation from 270 to 1592
> RE69884.pep MVDNNNLRSAVISDAPLLPPSSSIGVGVSSGGGYPPEAVLRTPYGNVRAL PGPAQPPPLPQSPFQQTQQYGGFGSGYGGNNYGLGGYGGFNSGAFGYGGL GGFGSGLGSGFGSGYGYGGGYGGGYGGGFGGGYNRFGAMGENDAEQRFIY MAESSSRPAFQSIESLVSAIGNIASMLDSTFFALTSSFRAILGVATNFVR LRSVFAQFWTTFAIFRGLNWMYRKILYWLRLSNLDPSSAAFKKAFAEALN ENNGQARGAPNVPRKGNSPWPVLAFISFIFTAPYLIMKLLGTVTNTAQEE ARNPAKWTAPIQTQAVYEFVARSPSELSLRAGQMLHVAPRDIQQTLNLLN TGWALATTNGQTSGIIPISYVKSPQQMRQEMQDQTKPAQPQPELMNLSAG AFASPPLEQQMNYDFNLAAQQQAPLGPPSTTSAVLGEGFA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12959-PA | 425 | GF12959-PA | 114..425 | 129..440 | 1308 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22510-PA | 440 | GG22510-PA | 1..440 | 1..440 | 1645 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21168-PA | 405 | GH21168-PA | 97..405 | 134..440 | 1200 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pex13-PA | 440 | CG4663-PA | 1..440 | 1..440 | 2310 | 100 | Plus |
CG14191-PA | 193 | CG14191-PA | 40..109 | 71..133 | 189 | 55.6 | Plus |
CG9269-PA | 146 | CG9269-PA | 49..134 | 70..140 | 186 | 50 | Plus |
CG14191-PA | 193 | CG14191-PA | 51..132 | 72..140 | 185 | 49.4 | Plus |
CG15597-PB | 149 | CG15597-PB | 28..98 | 74..133 | 184 | 54.2 | Plus |
TwdlT-PA | 286 | CG5812-PA | 62..137 | 71..151 | 183 | 53.7 | Plus |
TwdlT-PA | 286 | CG5812-PA | 17..116 | 60..140 | 182 | 44.6 | Plus |
CG14191-PA | 193 | CG14191-PA | 91..174 | 71..138 | 177 | 43.3 | Plus |
CG15597-PB | 149 | CG15597-PB | 38..132 | 71..140 | 177 | 46.4 | Plus |
CG8157-PB | 113 | CG8157-PB | 31..100 | 69..137 | 175 | 56.9 | Plus |
CG8157-PA | 113 | CG8157-PA | 31..100 | 69..137 | 175 | 56.9 | Plus |
CG14327-PB | 153 | CG14327-PB | 46..145 | 66..156 | 173 | 43.7 | Plus |
CG14327-PA | 153 | CG14327-PA | 46..145 | 66..156 | 173 | 43.7 | Plus |
CG9757-PB | 127 | CG9757-PB | 67..127 | 70..131 | 172 | 56.5 | Plus |
CG9757-PA | 127 | CG9757-PA | 67..127 | 70..131 | 172 | 56.5 | Plus |
CG8157-PB | 113 | CG8157-PB | 23..90 | 71..140 | 169 | 56.3 | Plus |
CG8157-PA | 113 | CG8157-PA | 23..90 | 71..140 | 169 | 56.3 | Plus |
CG14191-PA | 193 | CG14191-PA | 103..181 | 71..140 | 168 | 51.9 | Plus |
sqd-PD | 178 | CG16901-PD | 88..166 | 70..147 | 166 | 50 | Plus |
CG17108-PA | 342 | CG17108-PA | 210..297 | 70..140 | 166 | 45.5 | Plus |
sqd-PB | 344 | CG16901-PB | 254..332 | 70..147 | 166 | 50 | Plus |
CG5778-PC | 117 | CG5778-PC | 35..110 | 71..137 | 164 | 53.9 | Plus |
CG5778-PA | 117 | CG5778-PA | 35..110 | 71..137 | 164 | 53.9 | Plus |
CG7294-PA | 127 | CG7294-PA | 17..122 | 59..171 | 164 | 41.7 | Plus |
CG5070-PA | 209 | CG5070-PA | 34..103 | 71..133 | 164 | 46.3 | Plus |
CG5172-PD | 172 | CG5172-PD | 26..93 | 71..140 | 163 | 51.4 | Plus |
CG9757-PB | 127 | CG9757-PB | 53..118 | 70..140 | 162 | 50 | Plus |
CG9757-PA | 127 | CG9757-PA | 53..118 | 70..140 | 162 | 50 | Plus |
CG5172-PC | 106 | CG5172-PC | 26..95 | 71..142 | 162 | 50 | Plus |
CG17108-PA | 342 | CG17108-PA | 166..289 | 25..140 | 162 | 36.8 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 399..522 | 27..140 | 162 | 41.1 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 305..362 | 74..132 | 160 | 59.3 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 305..362 | 74..132 | 160 | 59.3 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 332..462 | 25..140 | 159 | 39.7 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 332..462 | 25..140 | 159 | 39.7 | Plus |
CG5070-PA | 209 | CG5070-PA | 39..112 | 72..134 | 158 | 49.4 | Plus |
CG17108-PA | 342 | CG17108-PA | 133..194 | 72..131 | 157 | 56.5 | Plus |
CG7299-PC | 177 | CG7299-PC | 49..132 | 68..144 | 157 | 47.6 | Plus |
CG7299-PA | 177 | CG7299-PA | 49..132 | 68..144 | 157 | 47.6 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 251..331 | 71..140 | 157 | 50.6 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 251..331 | 71..140 | 157 | 50.6 | Plus |
CG17108-PA | 342 | CG17108-PA | 126..193 | 71..140 | 156 | 51.4 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 206..312 | 43..140 | 156 | 41.1 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 206..312 | 43..140 | 156 | 41.1 | Plus |
caz-PB | 399 | CG3606-PB | 5..146 | 25..173 | 155 | 34.2 | Plus |
CG9757-PB | 127 | CG9757-PB | 70..127 | 69..127 | 154 | 56.5 | Plus |
CG9757-PA | 127 | CG9757-PA | 70..127 | 69..127 | 154 | 56.5 | Plus |
CG7296-PB | 161 | CG7296-PB | 49..152 | 72..169 | 154 | 41.9 | Plus |
CG7296-PA | 161 | CG7296-PA | 49..152 | 72..169 | 154 | 41.9 | Plus |
CG15597-PB | 149 | CG15597-PB | 42..139 | 71..133 | 153 | 36.7 | Plus |
CG17108-PA | 342 | CG17108-PA | 89..180 | 63..140 | 153 | 43.5 | Plus |
CG17108-PA | 342 | CG17108-PA | 246..321 | 71..132 | 153 | 46.1 | Plus |
CG7296-PB | 161 | CG7296-PB | 36..113 | 71..140 | 151 | 47.5 | Plus |
CG7296-PA | 161 | CG7296-PA | 36..113 | 71..140 | 151 | 47.5 | Plus |
Edg91-PB | 151 | CG7539-PB | 28..96 | 71..137 | 151 | 51.4 | Plus |
Edg91-PA | 159 | CG7539-PA | 36..104 | 71..137 | 151 | 51.4 | Plus |
sqd-PD | 178 | CG16901-PD | 81..150 | 69..140 | 149 | 52 | Plus |
Listericin-PA | 121 | CG9080-PA | 51..104 | 73..132 | 149 | 55 | Plus |
CG8157-PB | 113 | CG8157-PB | 47..113 | 70..136 | 148 | 50.7 | Plus |
CG8157-PA | 113 | CG8157-PA | 47..113 | 70..136 | 148 | 50.7 | Plus |
CG13217-PA | 113 | CG13217-PA | 54..100 | 83..131 | 146 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18763-PA | 402 | GI18763-PA | 96..402 | 134..440 | 1303 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10505-PA | 426 | GL10505-PA | 1..426 | 1..440 | 1510 | 74.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18339-PA | 426 | GA18339-PA | 1..426 | 1..440 | 1510 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20296-PA | 440 | GM20296-PA | 1..440 | 1..440 | 2204 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25777-PA | 440 | GD25777-PA | 1..440 | 1..440 | 2213 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21787-PA | 400 | GJ21787-PA | 95..400 | 135..440 | 1315 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21322-PA | 430 | GK21322-PA | 117..429 | 134..439 | 1257 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13380-PA | 436 | GE13380-PA | 1..436 | 1..440 | 1562 | 93.9 | Plus |
Translation from 270 to 1592
> RE69884.hyp MVDNNNLRSAVISDAPLLPPSSSIGVGVSSGGGYPPEAVLRTPYGNVRAL PGPAQPPPLPQSPFQQTQQYGGFGSGYGGNNYGLGGYGGFNSGAFGYGGL GGFGSGLGSGFGSGYGYGGGYGGGYGGGFGGGYNRFGAMGENDAEQRFIY MAESSSRPAFQSIESLVSAIGNIASMLDSTFFALTSSFRAILGVATNFVR LRSVFAQFWTTFAIFRGLNWMYRKILYWLRLSNLDPSSAAFKKAFAEALN ENNGQARGAPNVPRKGNSPWPVLAFISFIFTAPYLIMKLLGTVTNTAQEE ARNPAKWTAPIQTQAVYEFVARSPSELSLRAGQMLHVAPRDIQQTLNLLN TGWALATTNGQTSGIIPISYVKSPQQMRQEMQDQTKPAQPQPELMNLSAG AFASPPLEQQMNYDFNLAAQQQAPLGPPSTTSAVLGEGFA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pex13-PA | 440 | CG4663-PA | 1..440 | 1..440 | 2310 | 100 | Plus |
CG14191-PA | 193 | CG14191-PA | 40..109 | 71..133 | 189 | 55.6 | Plus |
CG9269-PA | 146 | CG9269-PA | 49..134 | 70..140 | 186 | 50 | Plus |
CG14191-PA | 193 | CG14191-PA | 51..132 | 72..140 | 185 | 49.4 | Plus |
CG15597-PB | 149 | CG15597-PB | 28..98 | 74..133 | 184 | 54.2 | Plus |
TwdlT-PA | 286 | CG5812-PA | 62..137 | 71..151 | 183 | 53.7 | Plus |
CG14191-PA | 193 | CG14191-PA | 91..174 | 71..138 | 177 | 43.3 | Plus |
CG15597-PB | 149 | CG15597-PB | 38..132 | 71..140 | 177 | 46.4 | Plus |
CG14191-PA | 193 | CG14191-PA | 103..181 | 71..140 | 168 | 51.9 | Plus |
CG15597-PB | 149 | CG15597-PB | 42..139 | 71..133 | 153 | 36.7 | Plus |