BDGP Sequence Production Resources |
Search the DGRC for RE70003
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 700 |
Well: | 3 |
Vector: | pFlc-1 |
Associated Gene/Transcript | fwe-RC |
Protein status: | RE70003.pep: gold |
Sequenced Size: | 2380 |
Gene | Date | Evidence |
---|---|---|
CG6151-RC | 2010-01-14 | Manual selection by Sue Celniker |
2380 bp assembled on 2010-07-15
GenBank Submission: BT125064.1
> RE70003.complete AGGTTTTTTTCGTTCCGTGTGACGTGAAAAGTGCAAATAGTAATTGTTCG AATTAGTTTAAGCCTAGCTAACTAACTAAATAAATAGCCATGTCGTTTGC GGAAAAGATAACGGGTCTGCTGGCACGGCCGAATCAACAAGATCCAATTG GACCGGAGCAGCCGTGGTATCTCAAATATGGAAGTCGATTGCTGGGCATT GTGGCCGCCTTCTTTGCCATTCTTTTCGGCCTGTGGAATGTGTTCTCCAT CATCACGCTCAGCGTATCCTGCCTGGTGGCTGGCATCCTTCAAATGGTGG CAGGATTTGTGGTGATGCTCTTGGAGGCTCCCTGCTGTTTCGTCTGCTTT GGGCAGGTGAACGAGATCGCGGAAAAGGTGGAATCTAAGCCCTTGTACTT CCGTGCCGGGCTCTACATTGCCATGGCCATTCCGCCCATTATTCTGTGCT TTGGACTGGCCAGCTTATTCGGCAGTGGGCTGATCTTTGGCACTGGCGTG GTTTACGGCATGATGGCGTTAGGCAAGAACAAGCATATATTTTTAGTGAG AAACTATATTTGAAAGCTAACCGAATGCAAGAGGAACCGGAACCTATAAG TTAACCACAGCTTCCACACACTCACACACAGCTAATGCTAATGGAAAGCC ACTGATGATATGGACAAGTGAATGTCGAGAACCTAGAGCAATATGTACAA CTCAGAAATAATTAACTTTATATGCTTTGCTTCGATGTAAACCATAAAAT TAAATGTTAAACGTTATTTGAGAATCGATTTGCTCGCGGGATAGTCACAA TTTGAAATTGAACATAATCAAGCATACAGATAGAATATATATATATATAT ATATATACAACAAGTTGAGAATTTACCAGTTATATTTTTTAAATGTTGTA ACCGAAAAGTGTCCATTTCAATTTGATGCATTGTTAGACGGTTTTCTTTT TAGACAATTACTTGGTTAATAGGATTTCGTTTTCGGGTTTCGTATGATTT CTTGTTTGCTAGAAGTATATGCTTATTTTTTTTAGTATACCTAAGTTATT TATAAGAGTTTATTCCAATCGTTTAACTTTGAAAGTCTGAGAAAAACGTT TTAAATTATTTTTGTTGTTGCCTATTGGCATTCTTACCACAGAAGCATTC CAAAATCTGTTTACTTTACGCATAAGTTATTGTATAGTTTAATTATTATA ACTTTAAATATACATTATTTACAAGAAACTCGCGATAATTTATTACAATT TAGCCTTCGCCAGCAACTAAGAGTCTCACCTAAAGTAATCACGAATCATA ATTAATTTGTTGAACTTTGTTAATCAATGAACGCAACACTAAAAATGAAA ACATAAACATGTAAAATATTTCGTTAGAATTTGAACGCGCATGATTCAAA TATCAAACACTTTGTACATGCCACCTGAAAACTGTCCAAAATCCTGCCGT TAAAGCCAAGTACATTCAACGACGGCCAACAGCGAGTAACAACAATATAC GATTTACGTTAACGAGTTCTGAACTTTGCTGCGTCCAAGAGATCACTACA GAGCATCCGCCGAGGACATGCGGGCAGCTGCTCAGCAAACCTTCGGAGGA AACACACCTGCCCAAACCAACGATCGAGCGGGGATTGTGAACAACGCCCA GCCCTTCTCCTTCACCGGTGCCGTGGGCACGGACAGCAATGTGTGATTCA GAAGCTAGCTGATCGGGATTTCGAGGAATCGAAGAGCTGGGTGTGCCGTG AGAAAACAAGACTCAAAACGCAACATTTGAAGGGCAAACCTAACCAAGAG AACATCGGCAGGCAATCATAAACATAATCATGTGCAATTTCTGATTGTTC AATAACCAACGCAAATGGATAACAAAAGTTTTTAAATCCGATTAGCTCTG ATCTCTTTCTAGAGCAATCCAAATTACTCGATCAGAAAGAAGTCACCCAA AACAAGATCATTAAATTTTAAACCATTTTTGTATTAAATGTATGTAAATG TATATTGGTTTTAAAAGCGTTTTGCGTTTTCTGTATCCTATTAATTAATT GTGTTGCCTGTGTCCCATCATTCCAAAACATTTGGTTTCAACTAAGTAGA AATTGCAAATAAATTATTGAACGACATCACTAGCGAGGTGAAAAAAAAGA TCATGTAAAATTTATGTTTAGTCATAGTTTAAATATACCTTAAATATATT TAAATGCATAATACTAAAATGTTTAAATTAATGCAAATAACACTATAAAT ATTGTATGTAAACCATATTAAAATTGAATTAAAGATACTTTAAATTATGT TAAATAAAATTAATTATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6151.b | 899 | CG6151.b | 61..899 | 4..842 | 4195 | 100 | Plus |
CG6151-RA | 1343 | CG6151-RA | 608..1343 | 1552..2287 | 3665 | 99.8 | Plus |
CG6151-RA | 1343 | CG6151-RA | 82..607 | 4..529 | 2630 | 100 | Plus |
CG6151.c | 1643 | CG6151.c | 82..607 | 4..529 | 2630 | 100 | Plus |
CG6151.c | 1643 | CG6151.c | 1264..1643 | 530..909 | 1900 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 15801044..15802065 | 1551..530 | 5095 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 15799902..15800676 | 2322..1548 | 3845 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 15803243..15803450 | 421..214 | 1040 | 100 | Minus |
chr3L | 24539361 | chr3L | 15805760..15805881 | 213..92 | 610 | 100 | Minus |
chr3L | 24539361 | chr3L | 15803070..15803177 | 529..422 | 540 | 100 | Minus |
chr3L | 24539361 | chr3L | 15806098..15806186 | 92..4 | 445 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 15811220..15812241 | 1551..530 | 5095 | 99.9 | Minus |
3L | 28110227 | 3L | 15810078..15810852 | 2322..1548 | 3860 | 99.9 | Minus |
3L | 28110227 | 3L | 15813419..15813626 | 421..214 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 15815936..15816057 | 213..92 | 610 | 100 | Minus |
3L | 28110227 | 3L | 15813246..15813353 | 529..422 | 540 | 100 | Minus |
3L | 28110227 | 3L | 15816274..15816362 | 92..4 | 445 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15804320..15805341 | 1551..530 | 5095 | 99.9 | Minus |
3L | 28103327 | 3L | 15803178..15803952 | 2322..1548 | 3860 | 99.8 | Minus |
3L | 28103327 | 3L | 15806519..15806726 | 421..214 | 1040 | 100 | Minus |
3L | 28103327 | 3L | 15809036..15809157 | 213..92 | 610 | 100 | Minus |
3L | 28103327 | 3L | 15806346..15806453 | 529..422 | 540 | 100 | Minus |
3L | 28103327 | 3L | 15809374..15809462 | 92..4 | 445 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 8351..8477 | 2242..2362 | 152 | 61.4 | Plus |
invader3 | 5484 | invader3 INVADER3 5484bp | 5010..5151 | 1125..986 | 140 | 57.9 | Minus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 555..717 | 2054..1890 | 135 | 57.7 | Minus |
baggins | 5453 | baggins BAGGINS 5453bp | 2324..2367 | 684..641 | 120 | 80 | Minus |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 531..672 | 2101..1965 | 120 | 58.7 | Minus |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1933..2033 | 797..897 | 116 | 63.5 | Plus |
invader4 | 3105 | invader4 INVADER4 3105bp | 1993..2095 | 750..851 | 116 | 59.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15803243..15803450 | 214..421 | 100 | <- | Minus |
chr3L | 15805760..15805880 | 93..213 | 100 | <- | Minus |
chr3L | 15799960..15800672 | 1552..2264 | 99 | <- | Minus |
chr3L | 15801044..15802065 | 530..1551 | 97 | <- | Minus |
chr3L | 15803070..15803177 | 422..529 | 100 | <- | Minus |
chr3L | 15806098..15806190 | 1..92 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6151-RC | 1..474 | 90..563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
flower-RC | 1..474 | 90..563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RC | 1..474 | 90..563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RC | 1..474 | 90..563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
flower-RC | 50..2332 | 1..2282 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RC | 45..2327 | 1..2282 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RC | 45..2364 | 1..2319 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15810081..15810848 | 1552..2319 | 99 | <- | Minus |
3L | 15811220..15812241 | 530..1551 | 99 | <- | Minus |
3L | 15813246..15813353 | 422..529 | 100 | <- | Minus |
3L | 15813419..15813626 | 214..421 | 100 | <- | Minus |
3L | 15815936..15816056 | 93..213 | 100 | <- | Minus |
3L | 15816274..15816366 | 1..92 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15810081..15810848 | 1552..2319 | 99 | <- | Minus |
3L | 15811220..15812241 | 530..1551 | 99 | <- | Minus |
3L | 15813246..15813353 | 422..529 | 100 | <- | Minus |
3L | 15813419..15813626 | 214..421 | 100 | <- | Minus |
3L | 15815936..15816056 | 93..213 | 100 | <- | Minus |
3L | 15816274..15816366 | 1..92 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15810081..15810848 | 1552..2319 | 99 | <- | Minus |
3L | 15811220..15812241 | 530..1551 | 99 | <- | Minus |
3L | 15813246..15813353 | 422..529 | 100 | <- | Minus |
3L | 15813419..15813626 | 214..421 | 100 | <- | Minus |
3L | 15815936..15816056 | 93..213 | 100 | <- | Minus |
3L | 15816274..15816366 | 1..92 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15803181..15803948 | 1552..2319 | 99 | <- | Minus |
arm_3L | 15804320..15805341 | 530..1551 | 99 | <- | Minus |
arm_3L | 15806346..15806453 | 422..529 | 100 | <- | Minus |
arm_3L | 15806519..15806726 | 214..421 | 100 | <- | Minus |
arm_3L | 15809036..15809156 | 93..213 | 100 | <- | Minus |
arm_3L | 15809374..15809466 | 1..92 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15803181..15803948 | 1552..2319 | 99 | <- | Minus |
3L | 15804320..15805341 | 530..1551 | 99 | <- | Minus |
3L | 15806346..15806453 | 422..529 | 100 | <- | Minus |
3L | 15806519..15806726 | 214..421 | 100 | <- | Minus |
3L | 15809036..15809156 | 93..213 | 100 | <- | Minus |
3L | 15809374..15809466 | 1..92 | 98 | Minus |
Translation from 89 to 562
> RE70003.hyp MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKNKHI FLVRNYI*
Translation from 89 to 562
> RE70003.pep MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKNKHI FLVRNYI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10375-PA | 194 | GF10375-PA | 1..153 | 2..154 | 681 | 83 | Plus |
Dana\GF20158-PA | 194 | GF20158-PA | 3..149 | 1..147 | 675 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13520-PA | 194 | GG13520-PA | 1..154 | 1..154 | 720 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14474-PA | 206 | GH14474-PA | 12..164 | 2..154 | 629 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fwe-PC | 157 | CG6151-PC | 1..157 | 1..157 | 813 | 100 | Plus |
fwe-PB | 192 | CG6151-PB | 1..146 | 1..146 | 754 | 100 | Plus |
fwe-PA | 194 | CG6151-PA | 1..146 | 1..146 | 754 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13620-PA | 194 | GI13620-PA | 1..146 | 2..147 | 575 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24930-PA | 226 | GL24930-PA | 30..183 | 2..154 | 658 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19394-PA | 221 | GA19394-PA | 30..176 | 2..147 | 655 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24464-PA | 194 | GM24464-PA | 1..154 | 1..154 | 720 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12536-PA | 194 | GD12536-PA | 1..154 | 1..154 | 723 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13956-PA | 195 | GJ13956-PA | 1..147 | 2..147 | 623 | 80.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20652-PA | 200 | GK20652-PA | 1..148 | 2..147 | 634 | 83.1 | Plus |