BDGP Sequence Production Resources |
Search the DGRC for RE70039
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 700 |
Well: | 39 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Him-RA |
Protein status: | RE70039.pep: gold |
Preliminary Size: | 579 |
Sequenced Size: | 937 |
Gene | Date | Evidence |
---|---|---|
CG15064 | 2001-12-13 | Blastp of sequenced clone |
CG15064 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15064 | 2003-01-01 | Sim4 clustering to Release 3 |
Him | 2008-04-29 | Release 5.5 accounting |
Him | 2008-08-15 | Release 5.9 accounting |
Him | 2008-12-18 | 5.12 accounting |
937 bp (937 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070599
> RE70039.complete ACGGTCTTCCGCCGCAGCTCGACGCGCTCGCATATCGGGAATATATAGAT CGGAGATATCGCAGGACCCACAGCAGAGCAGAGCCGCAGAGCCACCAACC TCGATGGGCGTCATCTACAAGATACTGAAGCAGCAACGCAGCATGGATCT CAGCCTGAGCTCGGCCACCAGGTGCAAGGTGCAGGCGGCCATCAAGCAGC GCCAGCAGCAGCGCCGCCTTGAGGATCACATGGTGGAGGAGCGGGATCGG GATCGGGAGCGGGACCAGCAGCCGGATCAGGATCAGAACCAGGTCCAGAA TCACATCGACAAGGATAAGGAGGAGCTGGCCGAGCAGCAATTACAGCAGC TGTGCAGATTTCTAGCCGAGAATGCGGCGCGAAAAAAGCGTCAGCGTTTC AAGCTGCAGTACCAATGCAATCTGGCCATCGATCAGGATAACGATCAGGA GCAGATGCCGGAGAAGGAGCACTTTGCAGCGCCGCCGCACGAGATGGACC TCGAGTTCATAGAGCAGCTGCAGCAATCCTCGCCCGCCAAATCCCACGGA GCAACTGGGCAGGCGCCACGTGATAGCATCCTGCTGAAGATTCGCCACCA GATCTTCGAGAGAAAGCGGCAGAGGCAGCGCCAGTTGGCGGAGCTGGTGC AGCAGCGAATGGTGGTGTGGCGACCTTGGTAGCCGGATTCCCCCAAAACA AGGAGAAAAAGAGGGAGATAGCTAGAAAGTTAGAAAGAGAGAGAGAGAGA AATCCGGGAACTGAGACTAGTCTAAGGGTTAGCTTTAAGGACGCATTCGG TATTATTCCTGCTGCTGTGTGATGATCGCGCTGCTCTTCCATTTTCCCAC GCCTCTGCAAACCGACTTTATTTTTTTTCCTGTTAATAAATAGTTAAGTA ATAAAGATTTTTTTTGAAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Him-RA | 1084 | Him-RA | 117..1033 | 4..920 | 4585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18098612..18098999 | 1..388 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Him-RA | 1..579 | 104..682 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Him-RA | 1..579 | 104..682 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Him-RA | 1..579 | 104..682 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Him-RA | 1..579 | 104..682 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Him-RA | 1..579 | 104..682 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Him-RA | 1..916 | 1..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Him-RA | 1..916 | 1..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Him-RA | 5..920 | 1..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Him-RA | 1..919 | 1..919 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Him-RA | 5..920 | 1..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18209431..18209818 | 1..388 | 99 | -> | Plus |
X | 18210214..18210745 | 389..921 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18209431..18209818 | 1..388 | 99 | -> | Plus |
X | 18210214..18210745 | 389..921 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18209431..18209818 | 1..388 | 99 | -> | Plus |
X | 18210214..18210745 | 389..921 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18103464..18103851 | 1..388 | 99 | -> | Plus |
arm_X | 18104247..18104778 | 389..921 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18217529..18217916 | 1..388 | 99 | -> | Plus |
X | 18218312..18218843 | 389..921 | 99 | Plus |
Translation from 0 to 681
> RE70039.hyp QSSAAARRARISGIYRSEISQDPQQSRAAEPPTSMGVIYKILKQQRSMDL SLSSATRCKVQAAIKQRQQQRRLEDHMVEERDRDRERDQQPDQDQNQVQN HIDKDKEELAEQQLQQLCRFLAENAARKKRQRFKLQYQCNLAIDQDNDQE QMPEKEHFAAPPHEMDLEFIEQLQQSSPAKSHGATGQAPRDSILLKIRHQ IFERKRQRQRQLAELVQQRMVVWRPW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Him-PA | 192 | CG15064-PA | 1..192 | 35..226 | 993 | 100 | Plus |
Translation from 103 to 681
> RE70039.pep MGVIYKILKQQRSMDLSLSSATRCKVQAAIKQRQQQRRLEDHMVEERDRD RERDQQPDQDQNQVQNHIDKDKEELAEQQLQQLCRFLAENAARKKRQRFK LQYQCNLAIDQDNDQEQMPEKEHFAAPPHEMDLEFIEQLQQSSPAKSHGA TGQAPRDSILLKIRHQIFERKRQRQRQLAELVQQRMVVWRPW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22429-PA | 177 | GF22429-PA | 1..177 | 1..192 | 485 | 62.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19155-PA | 178 | GG19155-PA | 1..178 | 1..192 | 836 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17719-PA | 207 | GH17719-PA | 1..207 | 1..192 | 285 | 42.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Him-PA | 192 | CG15064-PA | 1..192 | 1..192 | 993 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15467-PA | 213 | GI15467-PA | 1..213 | 1..192 | 361 | 43.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26966-PA | 195 | GL26966-PA | 1..195 | 1..192 | 525 | 58.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13466-PA | 180 | GA13466-PA | 1..180 | 1..192 | 461 | 56.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22887-PA | 193 | GM22887-PA | 1..193 | 1..192 | 959 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24688-PA | 150 | GD24688-PA | 10..150 | 53..192 | 697 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19178-PA | 195 | GJ19178-PA | 1..195 | 1..192 | 355 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20002-PA | 185 | GK20002-PA | 1..185 | 1..192 | 480 | 57.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17715-PA | 190 | GE17715-PA | 1..190 | 1..192 | 864 | 91.1 | Plus |