Clone RE70149 Report

Search the DGRC for RE70149

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:701
Well:49
Vector:pFlc-1
Associated Gene/TranscriptGolgin84-RA
Protein status:RE70149.pep: gold
Preliminary Size:1606
Sequenced Size:1813

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17785 2001-12-17 Blastp of sequenced clone
CG17785 2002-01-01 Sim4 clustering to Release 2
CG17785 2003-01-01 Sim4 clustering to Release 3
Golgin84 2008-04-29 Release 5.5 accounting
Golgin84 2008-08-15 Release 5.9 accounting
Golgin84 2008-12-18 5.12 accounting

Clone Sequence Records

RE70149.complete Sequence

1813 bp (1813 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071645

> RE70149.complete
ATTGTTTACGTGTTTTACTCGAAGAGATTTGTTTTTCTTAGAAAAATATG
TCATCCTGGATCACAGGACTGGCGGACAAGGCCGAAAACATTTTGAACAA
GCTGGACCAAAATGCGGCAACGGCCCTGCAGACAGAGAACGCCACAGGTT
CAGCGGATCCCATGCGTAGGAGCATGACGAGCAGCACCCAATCACTGTCC
ACATCCCTGAAGTCCACTCTGTCGCCAGTGCGGCGCTCGGGGGCCAATAG
CTCATCAAGTGTAAAAAGCGATGGCGGGGTCTCCGTGGTCACTAAGGACA
TGCGCCAAAAGATGACCACGTCGGCCAGTTTCTCCAACAGTCCCGACATA
TCCGCCAACTCAATGGACACAAATGAATTGGCTGCCTTCAAGATCGCCCT
GAATGAAATCACGGCCGAAAGAGATGAACTGCGTCTGCGCTTGGAAGATC
TTAATAACGAAACCGAAAAGTTTGATCTGCATCAACACACCCAGGTGCTG
GAAGCTCTGGTTAAAAGTCTGTCCGAAGAGCGGGACAAGGCGGTTCATGA
CTACAATGAGGCCCAGGCAGCTAACATGGCGTATGTGCACTCCATCTCCG
AACTGGAAACCAATCTGGCCAAGTTGCAGCAGGAATACATAAGCGCCGCT
CACAAATTGCAAATGCAAACAAAGGAAACGGAGCAGCAGCGCCAGGAGCT
TCAGGAATACCGTATCAAGGCTCAGCGAGCTCTGCAAGCAAAGGATTCCC
TCATCGCAGAGTTGAAGGCGAAGCCCACGGAGGAGGGCGCAGATCCAAAC
CTGGTGTCCAAGGACAGTGAAACGCGTTTTCTGCAAATTGAACACGAGTC
ACTTAAGCAAGAACTAGAGCATGCCAACGAGGAACTGCAAAAGGCGCGCT
TGCAGCTGGACGATTACGTTTCCCAGGAAAGACAACGACAGGTGGAACTA
AGCTCTGCCCGCCAACGCGAGGAAACACTAGCAAAGGAGTTGCGACAGGC
AAGGGAACACAGTGTGACCTCCGAATCCGATCAGCGAGTGCTCACGCAGG
AACTGGCCTCACTGCGGCAGCAACTTAGTAACCAAATGGCTGCTGCCGCC
ACTCGACTCCAGGAGCGGGAGCAGCAGCTTCAGCAGATGCGTCAGCGATT
GAGCGAGGAAGCCAACACGGGAGCCAAGAGCGATTACGAGACTCGGCTAA
AGGCTTTAACCCAATCACTGGTCGAACGTCAAAGTCTTCTGGAAAGAGTT
ACGAGTGAGAGAAATGCCCTGCGACTACAGCACGAAAAGGCACAGACGCA
GCTACAGCAAAACATGCACTTGGTGGAAATGGAGAGCCAAAGGGGCAGCT
CCCGCCATACTATGCTCAACAGCACAGATGATGTCAAAGCACAATTCCCG
CTTCTCATGCATCCAAGTCCATTCGATAATCGTGTGGCACGACGCTTCAA
GCGAGCCCTTCGCCAGGCGGACTCCATGGGTATTCGGGTGGGAACGTTTC
TGCGTCGCTATCCCATGATGCGGGTCTCTGTGATCGTCTACGTGGCCCTA
CTACATCTGTGGGTCATGTTTGTGCTGCTCTCCACTACACCAAACTAATC
GAATCAAATACATTTAGTTGAGCAATTGTTGTATTTCCATAATATTGTAT
GTATTGTATTTTACGCGCCAAAATTGGATATCTAGTGGTACGAGTATATG
TGTCATGTTTGTGGTTGCAACAATTGTATATATCGATATTATACTTGTGT
CTCGCACTCGTTCTAAATTCAATATTCAATAAACATCAACTATGTACAAA
AAAAAAAAAAAAA

RE70149.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Golgin84-RA 1961 Golgin84-RA 90..1891 1..1802 8995 99.9 Plus
Golgin84.a 1838 Golgin84.a 1..1385 1..1385 6925 100 Plus
Golgin84.a 1838 Golgin84.a 1383..1768 1417..1802 1915 99.7 Plus
CG6454-RD 4154 CG6454-RD 3945..4154 1802..1593 1035 99.5 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20179873..20181255 1383..1 6900 99.9 Minus
chr3R 27901430 chr3R 20179404..20179818 1797..1383 2075 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:13:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24356541..24357923 1383..1 6915 100 Minus
3R 32079331 3R 24356067..24356486 1802..1383 2085 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24097372..24098754 1383..1 6915 100 Minus
3R 31820162 3R 24096898..24097317 1802..1383 2085 99.7 Minus
Blast to na_te.dros performed 2019-03-16 04:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2908 1104..1380 148 55.7 Plus

RE70149.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:10:42 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20179404..20179817 1384..1797 100 <- Minus
chr3R 20179873..20181255 1..1383 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:29 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 1..1551 48..1598 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:37 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 1..1551 48..1598 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:29 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 1..1551 48..1598 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:23 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 1..1551 48..1598 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:29:49 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 1..1551 48..1598 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:49 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 1..1797 1..1797 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:36 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 1..1797 1..1797 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:29 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 16..1812 1..1797 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:23 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 1..1797 1..1797 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:29:49 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
Golgin84-RA 16..1812 1..1797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:42 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24356072..24356485 1384..1797 100 <- Minus
3R 24356541..24357923 1..1383 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:42 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24356072..24356485 1384..1797 100 <- Minus
3R 24356541..24357923 1..1383 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:42 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24356072..24356485 1384..1797 100 <- Minus
3R 24356541..24357923 1..1383 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:29 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20181794..20182207 1384..1797 100 <- Minus
arm_3R 20182263..20183645 1..1383 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:25 Download gff for RE70149.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24096903..24097316 1384..1797 100 <- Minus
3R 24097372..24098754 1..1383 100   Minus

RE70149.pep Sequence

Translation from 47 to 1597

> RE70149.pep
MSSWITGLADKAENILNKLDQNAATALQTENATGSADPMRRSMTSSTQSL
STSLKSTLSPVRRSGANSSSSVKSDGGVSVVTKDMRQKMTTSASFSNSPD
ISANSMDTNELAAFKIALNEITAERDELRLRLEDLNNETEKFDLHQHTQV
LEALVKSLSEERDKAVHDYNEAQAANMAYVHSISELETNLAKLQQEYISA
AHKLQMQTKETEQQRQELQEYRIKAQRALQAKDSLIAELKAKPTEEGADP
NLVSKDSETRFLQIEHESLKQELEHANEELQKARLQLDDYVSQERQRQVE
LSSARQREETLAKELRQAREHSVTSESDQRVLTQELASLRQQLSNQMAAA
ATRLQEREQQLQQMRQRLSEEANTGAKSDYETRLKALTQSLVERQSLLER
VTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSSRHTMLNSTDDVKAQF
PLLMHPSPFDNRVARRFKRALRQADSMGIRVGTFLRRYPMMRVSVIVYVA
LLHLWVMFVLLSTTPN*

RE70149.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20721-PA 519 GF20721-PA 1..519 1..516 2110 83.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12353-PA 516 GG12353-PA 1..516 1..516 2624 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18814-PA 524 GH18814-PA 1..524 1..516 1825 70.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
Golgin84-PA 516 CG17785-PA 1..516 1..516 2530 100 Plus
CLIP-190-PN 1598 CG5020-PN 534..1005 8..431 195 20.3 Plus
CLIP-190-PR 1601 CG5020-PR 537..1008 8..431 195 20.3 Plus
CLIP-190-PP 1623 CG5020-PP 559..1030 8..431 195 20.3 Plus
CLIP-190-PC 1652 CG5020-PC 588..1059 8..431 195 20.3 Plus
CLIP-190-PS 1653 CG5020-PS 589..1060 8..431 195 20.3 Plus
CLIP-190-PM 1668 CG5020-PM 604..1075 8..431 195 20.3 Plus
CLIP-190-PB 1689 CG5020-PB 625..1096 8..431 195 20.3 Plus
CLIP-190-PA 1690 CG5020-PA 626..1097 8..431 195 20.3 Plus
Golgin245-PA 1489 CG3493-PA 246..633 42..431 177 21.4 Plus
alt-PI 874 CG18212-PI 343..683 126..449 175 24 Plus
alt-PG 874 CG18212-PG 343..683 126..449 175 24 Plus
Prm-PA 879 CG5939-PA 270..740 13..436 175 21.3 Plus
Prm-PB 879 CG5939-PB 270..740 13..436 175 21.3 Plus
CG4557-PA 933 CG4557-PA 343..698 83..453 169 23.3 Plus
brp-PI 1397 CG42344-PI 92..433 119..427 169 22.2 Plus
brp-PI 1397 CG42344-PI 807..1237 10..404 169 23.1 Plus
brp-PM 1498 CG42344-PM 908..1338 10..404 169 23.1 Plus
brp-PK 1707 CG42344-PK 1117..1547 10..404 169 23.1 Plus
brp-PH 1740 CG42344-PH 1150..1580 10..404 169 23.1 Plus
brp-PE 1740 CG42344-PE 1150..1580 10..404 169 23.1 Plus
brp-PD 1740 CG42344-PD 1150..1580 10..404 169 23.1 Plus
brp-PL 1781 CG42344-PL 1191..1621 10..404 169 23.1 Plus
brp-PG 1786 CG42344-PG 1196..1626 10..404 169 23.1 Plus
brp-PJ 2238 CG42344-PJ 1648..2078 10..404 169 23.1 Plus
CLIP-190-PN 1598 CG5020-PN 915..1421 5..475 167 19.9 Plus
CLIP-190-PR 1601 CG5020-PR 918..1424 5..475 167 19.9 Plus
CLIP-190-PP 1623 CG5020-PP 940..1446 5..475 167 19.9 Plus
CLIP-190-PC 1652 CG5020-PC 969..1475 5..475 167 19.9 Plus
CLIP-190-PS 1653 CG5020-PS 970..1476 5..475 167 19.9 Plus
CLIP-190-PM 1668 CG5020-PM 985..1491 5..475 167 19.9 Plus
CLIP-190-PB 1689 CG5020-PB 1006..1512 5..475 167 19.9 Plus
CLIP-190-PA 1690 CG5020-PA 1007..1513 5..475 167 19.9 Plus
Golgin245-PA 1489 CG3493-PA 473..796 128..431 167 23.1 Plus
Mhc-PL 1936 CG17927-PL 1494..1874 58..423 165 21.5 Plus
Mhc-PM 1936 CG17927-PM 1494..1874 58..423 165 21.5 Plus
Mhc-PK 1936 CG17927-PK 1494..1874 58..423 165 21.5 Plus
Mhc-PU 1949 CG17927-PU 1494..1874 58..423 165 21.5 Plus
Mhc-PN 1949 CG17927-PN 1494..1874 58..423 165 21.5 Plus
Mhc-PP 1949 CG17927-PP 1494..1874 58..423 165 21.5 Plus
Mhc-PV 1962 CG17927-PV 1494..1874 58..423 165 21.5 Plus
Mhc-PE 1962 CG17927-PE 1494..1874 58..423 165 21.5 Plus
Mhc-PS 1962 CG17927-PS 1494..1874 58..423 165 21.5 Plus
Mhc-PH 1962 CG17927-PH 1494..1874 58..423 165 21.5 Plus
Mhc-PT 1962 CG17927-PT 1494..1874 58..423 165 21.5 Plus
Mhc-PO 1962 CG17927-PO 1494..1874 58..423 165 21.5 Plus
Mhc-PF 1962 CG17927-PF 1494..1874 58..423 165 21.5 Plus
Mhc-PQ 1962 CG17927-PQ 1494..1874 58..423 165 21.5 Plus
Mhc-PB 1962 CG17927-PB 1494..1874 58..423 165 21.5 Plus
Mhc-PI 1962 CG17927-PI 1494..1874 58..423 165 21.5 Plus
Mhc-PG 1962 CG17927-PG 1494..1874 58..423 165 21.5 Plus
Mhc-PA 1962 CG17927-PA 1494..1874 58..423 165 21.5 Plus
Mhc-PD 1962 CG17927-PD 1494..1874 58..423 165 21.5 Plus
Mhc-PC 1962 CG17927-PC 1494..1874 58..423 165 21.5 Plus
Mhc-PR 1962 CG17927-PR 1494..1874 58..423 165 21.5 Plus
zip-PH 1964 CG15792-PH 1115..1522 9..446 164 20.9 Plus
zip-PG 1971 CG15792-PG 1107..1514 9..446 164 20.9 Plus
zip-PE 1971 CG15792-PE 1107..1514 9..446 164 20.9 Plus
zip-PC 1971 CG15792-PC 1107..1514 9..446 164 20.9 Plus
zip-PF 1979 CG15792-PF 1115..1522 9..446 164 20.9 Plus
zip-PB 2011 CG15792-PB 1147..1554 9..446 164 20.9 Plus
brp-PL 1781 CG42344-PL 378..754 119..427 162 21.9 Plus
brp-PK 1707 CG42344-PK 378..743 119..427 159 23.5 Plus
Golgin245-PA 1489 CG3493-PA 427..852 11..436 158 20.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10073-PA 508 GI10073-PA 1..508 1..516 1809 70.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21988-PA 513 GL21988-PA 1..513 1..516 1843 73.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14666-PA 512 GA14666-PA 1..512 1..516 1905 76.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23492-PA 516 GM23492-PA 1..516 1..516 2614 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18298-PA 509 GD18298-PA 1..509 1..516 2583 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23808-PA 524 GJ23808-PA 1..524 1..516 1858 71.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22828-PA 514 GK22828-PA 1..514 1..516 1744 68.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10805-PA 516 GE10805-PA 1..516 1..516 2435 95.7 Plus

RE70149.hyp Sequence

Translation from 47 to 1597

> RE70149.hyp
MSSWITGLADKAENILNKLDQNAATALQTENATGSADPMRRSMTSSTQSL
STSLKSTLSPVRRSGANSSSSVKSDGGVSVVTKDMRQKMTTSASFSNSPD
ISANSMDTNELAAFKIALNEITAERDELRLRLEDLNNETEKFDLHQHTQV
LEALVKSLSEERDKAVHDYNEAQAANMAYVHSISELETNLAKLQQEYISA
AHKLQMQTKETEQQRQELQEYRIKAQRALQAKDSLIAELKAKPTEEGADP
NLVSKDSETRFLQIEHESLKQELEHANEELQKARLQLDDYVSQERQRQVE
LSSARQREETLAKELRQAREHSVTSESDQRVLTQELASLRQQLSNQMAAA
ATRLQEREQQLQQMRQRLSEEANTGAKSDYETRLKALTQSLVERQSLLER
VTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSSRHTMLNSTDDVKAQF
PLLMHPSPFDNRVARRFKRALRQADSMGIRVGTFLRRYPMMRVSVIVYVA
LLHLWVMFVLLSTTPN*

RE70149.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Golgin84-PA 516 CG17785-PA 1..516 1..516 2530 100 Plus
CLIP-190-PN 1598 CG5020-PN 534..1005 8..431 195 20.3 Plus
CLIP-190-PR 1601 CG5020-PR 537..1008 8..431 195 20.3 Plus
CLIP-190-PP 1623 CG5020-PP 559..1030 8..431 195 20.3 Plus
CLIP-190-PC 1652 CG5020-PC 588..1059 8..431 195 20.3 Plus
CLIP-190-PN 1598 CG5020-PN 915..1421 5..475 167 19.9 Plus
CLIP-190-PR 1601 CG5020-PR 918..1424 5..475 167 19.9 Plus
CLIP-190-PP 1623 CG5020-PP 940..1446 5..475 167 19.9 Plus