![]() | BDGP Sequence Production Resources |
Search the DGRC for RE70149
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 701 |
Well: | 49 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Golgin84-RA |
Protein status: | RE70149.pep: gold |
Preliminary Size: | 1606 |
Sequenced Size: | 1813 |
Gene | Date | Evidence |
---|---|---|
CG17785 | 2001-12-17 | Blastp of sequenced clone |
CG17785 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17785 | 2003-01-01 | Sim4 clustering to Release 3 |
Golgin84 | 2008-04-29 | Release 5.5 accounting |
Golgin84 | 2008-08-15 | Release 5.9 accounting |
Golgin84 | 2008-12-18 | 5.12 accounting |
1813 bp (1813 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071645
> RE70149.complete ATTGTTTACGTGTTTTACTCGAAGAGATTTGTTTTTCTTAGAAAAATATG TCATCCTGGATCACAGGACTGGCGGACAAGGCCGAAAACATTTTGAACAA GCTGGACCAAAATGCGGCAACGGCCCTGCAGACAGAGAACGCCACAGGTT CAGCGGATCCCATGCGTAGGAGCATGACGAGCAGCACCCAATCACTGTCC ACATCCCTGAAGTCCACTCTGTCGCCAGTGCGGCGCTCGGGGGCCAATAG CTCATCAAGTGTAAAAAGCGATGGCGGGGTCTCCGTGGTCACTAAGGACA TGCGCCAAAAGATGACCACGTCGGCCAGTTTCTCCAACAGTCCCGACATA TCCGCCAACTCAATGGACACAAATGAATTGGCTGCCTTCAAGATCGCCCT GAATGAAATCACGGCCGAAAGAGATGAACTGCGTCTGCGCTTGGAAGATC TTAATAACGAAACCGAAAAGTTTGATCTGCATCAACACACCCAGGTGCTG GAAGCTCTGGTTAAAAGTCTGTCCGAAGAGCGGGACAAGGCGGTTCATGA CTACAATGAGGCCCAGGCAGCTAACATGGCGTATGTGCACTCCATCTCCG AACTGGAAACCAATCTGGCCAAGTTGCAGCAGGAATACATAAGCGCCGCT CACAAATTGCAAATGCAAACAAAGGAAACGGAGCAGCAGCGCCAGGAGCT TCAGGAATACCGTATCAAGGCTCAGCGAGCTCTGCAAGCAAAGGATTCCC TCATCGCAGAGTTGAAGGCGAAGCCCACGGAGGAGGGCGCAGATCCAAAC CTGGTGTCCAAGGACAGTGAAACGCGTTTTCTGCAAATTGAACACGAGTC ACTTAAGCAAGAACTAGAGCATGCCAACGAGGAACTGCAAAAGGCGCGCT TGCAGCTGGACGATTACGTTTCCCAGGAAAGACAACGACAGGTGGAACTA AGCTCTGCCCGCCAACGCGAGGAAACACTAGCAAAGGAGTTGCGACAGGC AAGGGAACACAGTGTGACCTCCGAATCCGATCAGCGAGTGCTCACGCAGG AACTGGCCTCACTGCGGCAGCAACTTAGTAACCAAATGGCTGCTGCCGCC ACTCGACTCCAGGAGCGGGAGCAGCAGCTTCAGCAGATGCGTCAGCGATT GAGCGAGGAAGCCAACACGGGAGCCAAGAGCGATTACGAGACTCGGCTAA AGGCTTTAACCCAATCACTGGTCGAACGTCAAAGTCTTCTGGAAAGAGTT ACGAGTGAGAGAAATGCCCTGCGACTACAGCACGAAAAGGCACAGACGCA GCTACAGCAAAACATGCACTTGGTGGAAATGGAGAGCCAAAGGGGCAGCT CCCGCCATACTATGCTCAACAGCACAGATGATGTCAAAGCACAATTCCCG CTTCTCATGCATCCAAGTCCATTCGATAATCGTGTGGCACGACGCTTCAA GCGAGCCCTTCGCCAGGCGGACTCCATGGGTATTCGGGTGGGAACGTTTC TGCGTCGCTATCCCATGATGCGGGTCTCTGTGATCGTCTACGTGGCCCTA CTACATCTGTGGGTCATGTTTGTGCTGCTCTCCACTACACCAAACTAATC GAATCAAATACATTTAGTTGAGCAATTGTTGTATTTCCATAATATTGTAT GTATTGTATTTTACGCGCCAAAATTGGATATCTAGTGGTACGAGTATATG TGTCATGTTTGTGGTTGCAACAATTGTATATATCGATATTATACTTGTGT CTCGCACTCGTTCTAAATTCAATATTCAATAAACATCAACTATGTACAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Golgin84-RA | 1961 | Golgin84-RA | 90..1891 | 1..1802 | 8995 | 99.9 | Plus |
Golgin84.a | 1838 | Golgin84.a | 1..1385 | 1..1385 | 6925 | 100 | Plus |
Golgin84.a | 1838 | Golgin84.a | 1383..1768 | 1417..1802 | 1915 | 99.7 | Plus |
CG6454-RD | 4154 | CG6454-RD | 3945..4154 | 1802..1593 | 1035 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2908 | 1104..1380 | 148 | 55.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20179404..20179817 | 1384..1797 | 100 | <- | Minus |
chr3R | 20179873..20181255 | 1..1383 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Golgin84-RA | 1..1551 | 48..1598 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Golgin84-RA | 1..1551 | 48..1598 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Golgin84-RA | 1..1551 | 48..1598 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Golgin84-RA | 1..1551 | 48..1598 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Golgin84-RA | 1..1551 | 48..1598 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Golgin84-RA | 1..1797 | 1..1797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Golgin84-RA | 1..1797 | 1..1797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Golgin84-RA | 16..1812 | 1..1797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Golgin84-RA | 1..1797 | 1..1797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Golgin84-RA | 16..1812 | 1..1797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24356072..24356485 | 1384..1797 | 100 | <- | Minus |
3R | 24356541..24357923 | 1..1383 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24356072..24356485 | 1384..1797 | 100 | <- | Minus |
3R | 24356541..24357923 | 1..1383 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24356072..24356485 | 1384..1797 | 100 | <- | Minus |
3R | 24356541..24357923 | 1..1383 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20181794..20182207 | 1384..1797 | 100 | <- | Minus |
arm_3R | 20182263..20183645 | 1..1383 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24096903..24097316 | 1384..1797 | 100 | <- | Minus |
3R | 24097372..24098754 | 1..1383 | 100 | Minus |
Translation from 47 to 1597
> RE70149.pep MSSWITGLADKAENILNKLDQNAATALQTENATGSADPMRRSMTSSTQSL STSLKSTLSPVRRSGANSSSSVKSDGGVSVVTKDMRQKMTTSASFSNSPD ISANSMDTNELAAFKIALNEITAERDELRLRLEDLNNETEKFDLHQHTQV LEALVKSLSEERDKAVHDYNEAQAANMAYVHSISELETNLAKLQQEYISA AHKLQMQTKETEQQRQELQEYRIKAQRALQAKDSLIAELKAKPTEEGADP NLVSKDSETRFLQIEHESLKQELEHANEELQKARLQLDDYVSQERQRQVE LSSARQREETLAKELRQAREHSVTSESDQRVLTQELASLRQQLSNQMAAA ATRLQEREQQLQQMRQRLSEEANTGAKSDYETRLKALTQSLVERQSLLER VTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSSRHTMLNSTDDVKAQF PLLMHPSPFDNRVARRFKRALRQADSMGIRVGTFLRRYPMMRVSVIVYVA LLHLWVMFVLLSTTPN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20721-PA | 519 | GF20721-PA | 1..519 | 1..516 | 2110 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12353-PA | 516 | GG12353-PA | 1..516 | 1..516 | 2624 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18814-PA | 524 | GH18814-PA | 1..524 | 1..516 | 1825 | 70.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Golgin84-PA | 516 | CG17785-PA | 1..516 | 1..516 | 2530 | 100 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 534..1005 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 537..1008 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 559..1030 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PC | 1652 | CG5020-PC | 588..1059 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PS | 1653 | CG5020-PS | 589..1060 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PM | 1668 | CG5020-PM | 604..1075 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PB | 1689 | CG5020-PB | 625..1096 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PA | 1690 | CG5020-PA | 626..1097 | 8..431 | 195 | 20.3 | Plus |
Golgin245-PA | 1489 | CG3493-PA | 246..633 | 42..431 | 177 | 21.4 | Plus |
alt-PI | 874 | CG18212-PI | 343..683 | 126..449 | 175 | 24 | Plus |
alt-PG | 874 | CG18212-PG | 343..683 | 126..449 | 175 | 24 | Plus |
Prm-PA | 879 | CG5939-PA | 270..740 | 13..436 | 175 | 21.3 | Plus |
Prm-PB | 879 | CG5939-PB | 270..740 | 13..436 | 175 | 21.3 | Plus |
CG4557-PA | 933 | CG4557-PA | 343..698 | 83..453 | 169 | 23.3 | Plus |
brp-PI | 1397 | CG42344-PI | 92..433 | 119..427 | 169 | 22.2 | Plus |
brp-PI | 1397 | CG42344-PI | 807..1237 | 10..404 | 169 | 23.1 | Plus |
brp-PM | 1498 | CG42344-PM | 908..1338 | 10..404 | 169 | 23.1 | Plus |
brp-PK | 1707 | CG42344-PK | 1117..1547 | 10..404 | 169 | 23.1 | Plus |
brp-PH | 1740 | CG42344-PH | 1150..1580 | 10..404 | 169 | 23.1 | Plus |
brp-PE | 1740 | CG42344-PE | 1150..1580 | 10..404 | 169 | 23.1 | Plus |
brp-PD | 1740 | CG42344-PD | 1150..1580 | 10..404 | 169 | 23.1 | Plus |
brp-PL | 1781 | CG42344-PL | 1191..1621 | 10..404 | 169 | 23.1 | Plus |
brp-PG | 1786 | CG42344-PG | 1196..1626 | 10..404 | 169 | 23.1 | Plus |
brp-PJ | 2238 | CG42344-PJ | 1648..2078 | 10..404 | 169 | 23.1 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 915..1421 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 918..1424 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 940..1446 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PC | 1652 | CG5020-PC | 969..1475 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PS | 1653 | CG5020-PS | 970..1476 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PM | 1668 | CG5020-PM | 985..1491 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PB | 1689 | CG5020-PB | 1006..1512 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PA | 1690 | CG5020-PA | 1007..1513 | 5..475 | 167 | 19.9 | Plus |
Golgin245-PA | 1489 | CG3493-PA | 473..796 | 128..431 | 167 | 23.1 | Plus |
Mhc-PL | 1936 | CG17927-PL | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PM | 1936 | CG17927-PM | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PK | 1936 | CG17927-PK | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PU | 1949 | CG17927-PU | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PN | 1949 | CG17927-PN | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PP | 1949 | CG17927-PP | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PV | 1962 | CG17927-PV | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PE | 1962 | CG17927-PE | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PS | 1962 | CG17927-PS | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PH | 1962 | CG17927-PH | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PT | 1962 | CG17927-PT | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PO | 1962 | CG17927-PO | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PF | 1962 | CG17927-PF | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PQ | 1962 | CG17927-PQ | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PB | 1962 | CG17927-PB | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PI | 1962 | CG17927-PI | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PG | 1962 | CG17927-PG | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PA | 1962 | CG17927-PA | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PD | 1962 | CG17927-PD | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PC | 1962 | CG17927-PC | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
Mhc-PR | 1962 | CG17927-PR | 1494..1874 | 58..423 | 165 | 21.5 | Plus |
zip-PH | 1964 | CG15792-PH | 1115..1522 | 9..446 | 164 | 20.9 | Plus |
zip-PG | 1971 | CG15792-PG | 1107..1514 | 9..446 | 164 | 20.9 | Plus |
zip-PE | 1971 | CG15792-PE | 1107..1514 | 9..446 | 164 | 20.9 | Plus |
zip-PC | 1971 | CG15792-PC | 1107..1514 | 9..446 | 164 | 20.9 | Plus |
zip-PF | 1979 | CG15792-PF | 1115..1522 | 9..446 | 164 | 20.9 | Plus |
zip-PB | 2011 | CG15792-PB | 1147..1554 | 9..446 | 164 | 20.9 | Plus |
brp-PL | 1781 | CG42344-PL | 378..754 | 119..427 | 162 | 21.9 | Plus |
brp-PK | 1707 | CG42344-PK | 378..743 | 119..427 | 159 | 23.5 | Plus |
Golgin245-PA | 1489 | CG3493-PA | 427..852 | 11..436 | 158 | 20.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10073-PA | 508 | GI10073-PA | 1..508 | 1..516 | 1809 | 70.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21988-PA | 513 | GL21988-PA | 1..513 | 1..516 | 1843 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14666-PA | 512 | GA14666-PA | 1..512 | 1..516 | 1905 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23492-PA | 516 | GM23492-PA | 1..516 | 1..516 | 2614 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18298-PA | 509 | GD18298-PA | 1..509 | 1..516 | 2583 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23808-PA | 524 | GJ23808-PA | 1..524 | 1..516 | 1858 | 71.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22828-PA | 514 | GK22828-PA | 1..514 | 1..516 | 1744 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10805-PA | 516 | GE10805-PA | 1..516 | 1..516 | 2435 | 95.7 | Plus |
Translation from 47 to 1597
> RE70149.hyp MSSWITGLADKAENILNKLDQNAATALQTENATGSADPMRRSMTSSTQSL STSLKSTLSPVRRSGANSSSSVKSDGGVSVVTKDMRQKMTTSASFSNSPD ISANSMDTNELAAFKIALNEITAERDELRLRLEDLNNETEKFDLHQHTQV LEALVKSLSEERDKAVHDYNEAQAANMAYVHSISELETNLAKLQQEYISA AHKLQMQTKETEQQRQELQEYRIKAQRALQAKDSLIAELKAKPTEEGADP NLVSKDSETRFLQIEHESLKQELEHANEELQKARLQLDDYVSQERQRQVE LSSARQREETLAKELRQAREHSVTSESDQRVLTQELASLRQQLSNQMAAA ATRLQEREQQLQQMRQRLSEEANTGAKSDYETRLKALTQSLVERQSLLER VTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSSRHTMLNSTDDVKAQF PLLMHPSPFDNRVARRFKRALRQADSMGIRVGTFLRRYPMMRVSVIVYVA LLHLWVMFVLLSTTPN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Golgin84-PA | 516 | CG17785-PA | 1..516 | 1..516 | 2530 | 100 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 534..1005 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 537..1008 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 559..1030 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PC | 1652 | CG5020-PC | 588..1059 | 8..431 | 195 | 20.3 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 915..1421 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 918..1424 | 5..475 | 167 | 19.9 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 940..1446 | 5..475 | 167 | 19.9 | Plus |