BDGP Sequence Production Resources |
Search the DGRC for RE70278
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 702 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12304-RA |
Protein status: | RE70278.pep: gold |
Sequenced Size: | 1126 |
Gene | Date | Evidence |
---|---|---|
CG12304-RA | 2010-11-11 | Gleaning Pick By Joe Carlson |
1126 bp assembled on 2010-12-06
GenBank Submission: BT125813.1
> RE70278.complete ATGGGAATTGATAATTTGCGCAGGTTATTGTGTTTATCCAACGATTCTCG CCGCGAAAATGTACGAACTGAAGACTCTGCTGCCGCAATTCGACATAAAG CTGCCCACCTGCATGTATCCTCTCAAGAACGTTAGCCTGGCGGCGGATTC CTTGGCCAGCGGCTCCTCCACATCCGCATCCACATCCGCGTCCACATCAT CATGCAAATTGGAGGCCAACAGGATCGACAGAACGGGACGAAACGCAGCC ACATGTGCACTTGATTTGGACTCTTTAGGCCGACAAATACAGCGACTGCT AAAGGACGATACGGCATCAGTGGCCGCCCGACAGGAGAAGGTTCTCAAGC AGCTGGAGGAGCTGAAGGCGCAGCTGGGACAAATCCGGGCGGGACTTGGT GTTTGTGGCAAGACTTTCCAGCACACGACTGCTTTCCAGAATGGTGGATT AAAGGAGGTGCCACTGCAGGATGTCGTCATCAATGGACATCCCAACTTCA TACCCTATGCCTTGTTGGCCCTGAAAAATGCCTGGCGCAATCTGTACACT ATTGATGTCAAGACCTTTACGCACTCTACGATGGCCGACATTGGACCAGC AGCACGGGAATTCGAGGCCAACTTGGCGAAGGTTCCAGTAAACCCTGCTT TGCCCAAGATTAGTGTGACGCTCATCTGGAAGAACTGCGAACACACCGAG ATGATCAGCTCGCCCACCATGTACGTGCCCATCTACGGAGAGGTGAACAT CATTCGCTATCTGGGCCGTGTGGGTCCAGCCGAGTATCGTTATGAGGGCT CTCCGCTCTGCAATGAGATCGACCTTGTCCTGGACATTTGCTACCAACTG CTGCGCTGCAACACGCACAAAACGCAGGTGGCCATGGTGCGCCTGCTGGA CAAGCGACTGCAGAAGCAGCAGTATTTCGGTGGATCCCAGATGTCGGTGG CGGATGTCGGTGTCTACAGCTCACTGATACGCATGCCAGCTGTTACCGAG AAGGATCTGACGCCTGCGCTAGTGGCTTGGAGAAAAAGGGCCAAGCTCGT GGTTCAAATTTAAATAATTCAATCGACAAAGGCGAACAAATAAATTATAG AATTCAATGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 15574852..15575274 | 687..1109 | 2085 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 15574567..15574798 | 456..687 | 1160 | 100 | Plus |
chr3L | 24539361 | chr3L | 15573610..15573811 | 4..205 | 1010 | 100 | Plus |
chr3L | 24539361 | chr3L | 15574214..15574370 | 303..459 | 785 | 100 | Plus |
chr3L | 24539361 | chr3L | 15573927..15574026 | 206..305 | 500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 15584923..15585345 | 687..1109 | 2115 | 100 | Plus |
3L | 28110227 | 3L | 15584638..15584869 | 456..687 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 15583680..15583881 | 4..205 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 15584285..15584441 | 303..459 | 785 | 100 | Plus |
3L | 28110227 | 3L | 15583997..15584096 | 206..305 | 500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15578023..15578445 | 687..1109 | 2115 | 100 | Plus |
3L | 28103327 | 3L | 15577738..15577969 | 456..687 | 1160 | 100 | Plus |
3L | 28103327 | 3L | 15576780..15576981 | 4..205 | 1010 | 100 | Plus |
3L | 28103327 | 3L | 15577385..15577541 | 303..459 | 785 | 100 | Plus |
3L | 28103327 | 3L | 15577097..15577196 | 206..305 | 500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15573607..15573772 | 1..166 | 98 | == | Plus |
chr3L | 15573927..15574025 | 206..304 | 100 | -> | Plus |
chr3L | 15574216..15574368 | 305..457 | 100 | -> | Plus |
chr3L | 15574569..15574797 | 458..686 | 100 | -> | Plus |
chr3L | 15574852..15575274 | 687..1110 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12304-RA | 1..1005 | 59..1063 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12304-RA | 1..1005 | 59..1063 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12304-RA | 1..1005 | 59..1063 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12304-RA | 35..1143 | 1..1110 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12304-RA | 40..1148 | 1..1110 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12304-RA | 40..1148 | 1..1110 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15583997..15584095 | 206..304 | 100 | -> | Plus |
3L | 15584287..15584439 | 305..457 | 100 | -> | Plus |
3L | 15584640..15584868 | 458..686 | 100 | -> | Plus |
3L | 15583677..15583881 | 1..205 | 99 | -> | Plus |
3L | 15584923..15585345 | 687..1110 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15583997..15584095 | 206..304 | 100 | -> | Plus |
3L | 15584287..15584439 | 305..457 | 100 | -> | Plus |
3L | 15584640..15584868 | 458..686 | 100 | -> | Plus |
3L | 15583677..15583881 | 1..205 | 99 | -> | Plus |
3L | 15584923..15585345 | 687..1110 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15583997..15584095 | 206..304 | 100 | -> | Plus |
3L | 15584287..15584439 | 305..457 | 100 | -> | Plus |
3L | 15584640..15584868 | 458..686 | 100 | -> | Plus |
3L | 15583677..15583881 | 1..205 | 99 | -> | Plus |
3L | 15584923..15585345 | 687..1110 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15577097..15577195 | 206..304 | 100 | -> | Plus |
arm_3L | 15577387..15577539 | 305..457 | 100 | -> | Plus |
arm_3L | 15577740..15577968 | 458..686 | 100 | -> | Plus |
arm_3L | 15576777..15576981 | 1..205 | 99 | -> | Plus |
arm_3L | 15578023..15578445 | 687..1110 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15576777..15576981 | 1..205 | 99 | -> | Plus |
3L | 15577097..15577195 | 206..304 | 100 | -> | Plus |
3L | 15577387..15577539 | 305..457 | 100 | -> | Plus |
3L | 15577740..15577968 | 458..686 | 100 | -> | Plus |
3L | 15578023..15578445 | 687..1110 | 99 | Plus |
Translation from 0 to 1062
> RE70278.hyp LELIICAGYCVYPTILAAKMYELKTLLPQFDIKLPTCMYPLKNVSLAADS LASGSSTSASTSASTSSCKLEANRIDRTGRNAATCALDLDSLGRQIQRLL KDDTASVAARQEKVLKQLEELKAQLGQIRAGLGVCGKTFQHTTAFQNGGL KEVPLQDVVINGHPNFIPYALLALKNAWRNLYTIDVKTFTHSTMADIGPA AREFEANLAKVPVNPALPKISVTLIWKNCEHTEMISSPTMYVPIYGEVNI IRYLGRVGPAEYRYEGSPLCNEIDLVLDICYQLLRCNTHKTQVAMVRLLD KRLQKQQYFGGSQMSVADVGVYSSLIRMPAVTEKDLTPALVAWRKRAKLV VQI*
Translation from 1 to 1062
> RE70278.pep WELIICAGYCVYPTILAAKMYELKTLLPQFDIKLPTCMYPLKNVSLAADS LASGSSTSASTSASTSSCKLEANRIDRTGRNAATCALDLDSLGRQIQRLL KDDTASVAARQEKVLKQLEELKAQLGQIRAGLGVCGKTFQHTTAFQNGGL KEVPLQDVVINGHPNFIPYALLALKNAWRNLYTIDVKTFTHSTMADIGPA AREFEANLAKVPVNPALPKISVTLIWKNCEHTEMISSPTMYVPIYGEVNI IRYLGRVGPAEYRYEGSPLCNEIDLVLDICYQLLRCNTHKTQVAMVRLLD KRLQKQQYFGGSQMSVADVGVYSSLIRMPAVTEKDLTPALVAWRKRAKLV VQI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24083-PA | 336 | GF24083-PA | 1..336 | 20..353 | 1575 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15913-PA | 334 | GG15913-PA | 1..334 | 20..353 | 1649 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23308-PA | 332 | GH23308-PA | 1..332 | 20..353 | 1425 | 79.8 | Plus |
Dgri\GH17081-PA | 291 | GH17081-PA | 1..291 | 20..353 | 1291 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AIMP2-PA | 334 | CG12304-PA | 1..334 | 20..353 | 1710 | 100 | Plus |
AIMP2-PB | 301 | CG12304-PB | 1..301 | 20..353 | 1503 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11682-PA | 329 | GI11682-PA | 1..329 | 20..353 | 1360 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24943-PA | 326 | GL24943-PA | 1..326 | 20..353 | 1477 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11544-PA | 326 | GA11544-PA | 1..326 | 20..353 | 1475 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25545-PA | 334 | GM25545-PA | 1..334 | 20..353 | 1766 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14558-PA | 334 | GD14558-PA | 1..334 | 20..353 | 1755 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11354-PA | 329 | GJ11354-PA | 1..329 | 20..353 | 1411 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20455-PA | 340 | GK20455-PA | 1..340 | 20..353 | 1422 | 79.7 | Plus |