Clone RE70407 Report

Search the DGRC for RE70407

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:704
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG8079-RB
Protein status:RE70407.pep: gold
Sequenced Size:2177

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8079-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

RE70407.complete Sequence

2177 bp assembled on 2011-01-03

GenBank Submission: BT125870.1

> RE70407.complete
GATTTAGATTCGACGGTTGTTAAACAATGTCGTTACCGGCTGAAGAGGAG
GATTTGGCGGACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCAT
ACAGGACCTGGAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAA
AGCTGCACGGGATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAA
CAAAAACTCCTACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAA
AGCCAGCCAAGCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGG
AAAACGATGAGGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCG
ACGGACGCCTTCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGC
CGAAAACCTGAACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACG
ATCCCAAGACGGGATACTACTATAACGCGGAGTACGGGCTGTACTACGAT
GGTAACAACGGCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGA
GTTCCACTCTCAGGCCCAGGCGAACGATGCGGCCAAACCGGAATCGGAGG
ACGAGGATTTGGAGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGAC
CACGAAACGCTGAAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCA
AGCTGAAAAATCCAAGCGCAAAGCCAAGAAAAAGAAGAGTAAAAAGCACA
GCAAGAAGAGATCCAAGAAGGAGCGCCGTCACAAGTCCAAGAAGCGTCAC
AGGCATTCTGATGATGAGCGGTCTAATGATGCCGAGGAGGGCGAGCTGTC
GCAAAGCAGCGACTCCAGTTCCGACTCTAGCAACGAGGATAGCAGCAGCA
ACACGGAAGACAGCAGTGTTCCAGTTTTCAAGGCTGCCGGACGCTTTCAA
GACATTGCTAAAAAGTATCCACCCTCCCTCCGCATCATTGTCCAGGAGAC
TAACGTAGAGTCGCTGAAAGTGGGAAGCCTGCATCTAATCACATACAAAG
GTGGATCTCTTGGACGGGAGGGCGCTCACGATGTTATCATTCCGGACGTG
AACGTCAGCAAGTGCCACTTAAAGTTTAAGTATGAGAACAAGTTGGGAAT
CTACCAATGTCTTGATCTGGGCTCCCGAAACGGTACCATTCTCAATGGAT
CCCCAATGTCCAGCGACGCCATGGATCTCGTTCACGGCAGTGTTATCACT
CTGGGCCAAACAAGACTACTGTGTCATGTCCACGAGGGTAACAGTACCTG
CGGTTTGTGCGAGCCGGGCCTTTTGATAGAGAATTCTCCGCCGGTAGTGG
CCGCTGTTGCCTCATCCACCGCATCCGTATTATCTCACAAGGAGCAGTTA
AAAAAACTGCAGCGCAAATATGGACTAGAAAACGAAAAATTCGTTGATAC
TAGCGGCAATGGGCAGTCCAACTACAATGATCGTGCCGCAACAAGGAGAG
TCCAGGTGGGCAGCAGTACAGATAAAGAAAAGACTGAGGTGGCTTGTGTG
AACACTGAAATCGGTAGCTCTAATAAGGGTTTTAAAATGCTGAGTAAATT
GGGCTGGCAAAAGGGCGAAAAACTGGGCAAAACAAATGCCAGTGCTGGAC
TTTTGGAGCCGATCAATGTGGTAGCCAATGAGGGCACTAGCGGTCTGGGA
AACAGTGACCCAGTGCTGTCCAGCTCCAGAACCATTGACAAACGGAAGCT
GGCCAACTTGAAGATCACTCAGGCGCGATATCAGCGCGCCAGTGATATGT
TTGGACAATCGGATGATAGTGATTAGAAAGACATTTTGAATGATGTTGGA
AACACATTTAATTAACAATTACTCAAACATATTTATAAGTGTATGTAAAT
ATATATGTATGTATATACACATAGATTCTATGTATGTATATATTAATTCA
AAAATCTTGCTATAAGGTTAAGCTATCAGTCAATTAATTAATTTAGCTTC
GCTTATAAACAAAAAGAATAGGGGAAGGTAATGTTAAATAAATACGACTT
CGCACACGTTGGTCTAAACTAATTGCGAGCCTAATGGGCATACAAACCGA
TCGTTTAAATTAATTATCGTGTAGCCTAATGTTAATGTTAAATACAAAAG
CCTCTTAAGATAAAAAAAAAAAAAAAA

RE70407.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11110593..11111093 1661..2161 2505 100 Plus
chr2R 21145070 chr2R 11109705..11110192 950..1437 2440 100 Plus
chr2R 21145070 chr2R 11109251..11109635 567..951 1925 100 Plus
chr2R 21145070 chr2R 11105648..11105867 1..220 1100 100 Plus
chr2R 21145070 chr2R 11108639..11108776 343..480 690 100 Plus
chr2R 21145070 chr2R 11105923..11106046 219..342 620 100 Plus
chr2R 21145070 chr2R 11110252..11110369 1438..1555 590 100 Plus
chr2R 21145070 chr2R 11110431..11110536 1556..1661 530 100 Plus
chr2R 21145070 chr2R 11108937..11109028 479..570 460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15223383..15223884 1661..2162 2510 100 Plus
2R 25286936 2R 15222495..15222982 950..1437 2440 100 Plus
2R 25286936 2R 15222041..15222425 567..951 1925 100 Plus
2R 25286936 2R 15218438..15218657 1..220 1100 100 Plus
2R 25286936 2R 15221429..15221566 343..480 690 100 Plus
2R 25286936 2R 15218713..15218836 219..342 620 100 Plus
2R 25286936 2R 15223042..15223159 1438..1555 590 100 Plus
2R 25286936 2R 15223221..15223326 1556..1661 530 100 Plus
2R 25286936 2R 15221727..15221818 479..570 460 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15224582..15225083 1661..2162 2510 100 Plus
2R 25260384 2R 15223694..15224181 950..1437 2440 100 Plus
2R 25260384 2R 15223240..15223624 567..951 1925 100 Plus
2R 25260384 2R 15219637..15219856 1..220 1100 100 Plus
2R 25260384 2R 15222628..15222765 343..480 690 100 Plus
2R 25260384 2R 15219912..15220035 219..342 620 100 Plus
2R 25260384 2R 15224241..15224358 1438..1555 590 100 Plus
2R 25260384 2R 15224420..15224525 1556..1661 530 100 Plus
2R 25260384 2R 15222926..15223017 479..570 460 100 Plus
Blast to na_te.dros performed 2019-03-17 01:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 3898..4026 2060..1935 145 60.9 Minus

RE70407.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:24:27 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11110876..11111093 1944..2161 100   Plus
chr2R 11105648..11105865 1..218 100 -> Plus
chr2R 11105923..11106046 219..342 100 -> Plus
chr2R 11108639..11108775 343..479 100 -> Plus
chr2R 11108938..11109027 480..569 100 -> Plus
chr2R 11109254..11109635 570..951 100 -> Plus
chr2R 11109707..11110192 952..1437 100 -> Plus
chr2R 11110252..11110369 1438..1555 100 -> Plus
chr2R 11110431..11110536 1556..1661 100 -> Plus
chr2R 11110594..11110810 1662..1878 100 == Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-05 09:01:05 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RB 1..1800 27..1826 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:37:38 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RB 1..1800 27..1826 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:56:51 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RB 1..1800 27..1826 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 09:01:05 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RB 58..2159 1..2102 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:37:38 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RB 58..2218 1..2161 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:56:51 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RB 58..2218 1..2161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:27 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15222497..15222982 952..1437 100 -> Plus
2R 15218438..15218655 1..218 100 -> Plus
2R 15218713..15218836 219..342 100 -> Plus
2R 15221429..15221565 343..479 100 -> Plus
2R 15221728..15221817 480..569 100 -> Plus
2R 15222044..15222425 570..951 100 -> Plus
2R 15223042..15223159 1438..1555 100 -> Plus
2R 15223221..15223326 1556..1661 100 -> Plus
2R 15223384..15223883 1662..2161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:27 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15222497..15222982 952..1437 100 -> Plus
2R 15218438..15218655 1..218 100 -> Plus
2R 15218713..15218836 219..342 100 -> Plus
2R 15221429..15221565 343..479 100 -> Plus
2R 15221728..15221817 480..569 100 -> Plus
2R 15222044..15222425 570..951 100 -> Plus
2R 15223042..15223159 1438..1555 100 -> Plus
2R 15223221..15223326 1556..1661 100 -> Plus
2R 15223384..15223883 1662..2161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:27 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15222497..15222982 952..1437 100 -> Plus
2R 15218438..15218655 1..218 100 -> Plus
2R 15218713..15218836 219..342 100 -> Plus
2R 15221429..15221565 343..479 100 -> Plus
2R 15221728..15221817 480..569 100 -> Plus
2R 15222044..15222425 570..951 100 -> Plus
2R 15223042..15223159 1438..1555 100 -> Plus
2R 15223221..15223326 1556..1661 100 -> Plus
2R 15223384..15223883 1662..2161 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:37:38 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11108934..11109070 343..479 100 -> Plus
arm_2R 11109233..11109322 480..569 100 -> Plus
arm_2R 11109549..11109930 570..951 100 -> Plus
arm_2R 11105943..11106160 1..218 100 -> Plus
arm_2R 11106218..11106341 219..342 100 -> Plus
arm_2R 11110002..11110487 952..1437 100 -> Plus
arm_2R 11110547..11110664 1438..1555 100 -> Plus
arm_2R 11110726..11110831 1556..1661 100 -> Plus
arm_2R 11110889..11111388 1662..2161 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:53:41 Download gff for RE70407.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15219637..15219854 1..218 100 -> Plus
2R 15219912..15220035 219..342 100 -> Plus
2R 15222628..15222764 343..479 100 -> Plus
2R 15222927..15223016 480..569 100 -> Plus
2R 15223243..15223624 570..951 100 -> Plus
2R 15223696..15224181 952..1437 100 -> Plus
2R 15224241..15224358 1438..1555 100 -> Plus
2R 15224420..15224525 1556..1661 100 -> Plus
2R 15224583..15225082 1662..2161 100   Plus

RE70407.pep Sequence

Translation from 26 to 1825

> RE70407.pep
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQANDAAKPESEDEDLEVQFD
ELGGVITDHETLKKIKAEKQKAKDQAEKSKRKAKKKKSKKHSKKRSKKER
RHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNEDSSSNTEDSSVPV
FKAAGRFQDIAKKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGREGA
HDVIIPDVNVSKCHLKFKYENKLGIYQCLDLGSRNGTILNGSPMSSDAMD
LVHGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASSTAS
VLSHKEQLKKLQRKYGLENEKFVDTSGNGQSNYNDRAATRRVQVGSSTDK
EKTEVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINVVA
NEGTSGLGNSDPVLSSSRTIDKRKLANLKITQARYQRASDMFGQSDDSD*

RE70407.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12318-PA 611 GF12318-PA 17..611 17..599 1983 71.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20505-PA 604 GG20505-PA 1..604 1..599 2753 90.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20421-PA 636 GH20421-PA 19..636 17..599 1789 65.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PB 599 CG8079-PB 1..599 1..599 3092 100 Plus
CG8079-PA 601 CG8079-PA 1..601 1..599 3079 99.7 Plus
CG8079-PC 501 CG8079-PC 211..501 309..599 1490 100 Plus
CG8079-PC 501 CG8079-PC 1..181 1..181 965 100 Plus
CG8079-PE 229 CG8079-PE 1..181 1..181 965 100 Plus
CG8079-PD 250 CG8079-PD 1..181 1..181 965 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19605-PA 502 GI19605-PA 1..502 118..599 1598 70.4 Plus
Dmoj\GI19604-PA 74 GI19604-PA 12..66 11..65 188 61.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11084-PA 606 GL11084-PA 1..606 1..599 1947 72.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20808-PA 616 GA20808-PA 1..616 1..599 1936 70.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21598-PA 603 GM21598-PA 1..603 1..599 2888 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Hex-C-PA 601 GD11104-PA 1..601 1..599 3085 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14969-PA 623 GJ14969-PA 19..623 17..599 1811 64.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21767-PA 615 GK21767-PA 33..615 17..599 1897 69.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13639-PA 602 GE13639-PA 1..600 1..596 2743 93.2 Plus

RE70407.hyp Sequence

Translation from 26 to 1825

> RE70407.hyp
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQANDAAKPESEDEDLEVQFD
ELGGVITDHETLKKIKAEKQKAKDQAEKSKRKAKKKKSKKHSKKRSKKER
RHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNEDSSSNTEDSSVPV
FKAAGRFQDIAKKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGREGA
HDVIIPDVNVSKCHLKFKYENKLGIYQCLDLGSRNGTILNGSPMSSDAMD
LVHGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASSTAS
VLSHKEQLKKLQRKYGLENEKFVDTSGNGQSNYNDRAATRRVQVGSSTDK
EKTEVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINVVA
NEGTSGLGNSDPVLSSSRTIDKRKLANLKITQARYQRASDMFGQSDDSD*

RE70407.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PB 599 CG8079-PB 1..599 1..599 3092 100 Plus
CG8079-PA 601 CG8079-PA 1..601 1..599 3079 99.7 Plus
CG8079-PC 501 CG8079-PC 211..501 309..599 1490 100 Plus
CG8079-PC 501 CG8079-PC 1..181 1..181 965 100 Plus
CG8079-PE 229 CG8079-PE 1..181 1..181 965 100 Plus
CG8079-PD 250 CG8079-PD 1..181 1..181 965 100 Plus