Clone RE70427 Report

Search the DGRC for RE70427

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:704
Well:27
Vector:pFlc-1
Associated Gene/TranscriptzetaCOP-RB
Protein status:RE70427.pep: gold
Sequenced Size:1032

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3948 2004-01-12 Blastp of sequenced clone
zetaCOP 2008-04-29 Release 5.5 accounting
zetaCOP 2008-08-15 Release 5.9 accounting
zetaCOP 2008-12-18 5.12 accounting

Clone Sequence Records

RE70427.complete Sequence

1032 bp (1032 high quality bases) assembled on 2004-01-12

GenBank Submission: BT011358

> RE70427.complete
AGGACACGAAAACAAGTGAAGATGGACGGATTTATGATGGATATCATCAA
GGGCATGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACT
ACGACAAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAG
AATCTGTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGA
CGGACTCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGA
TGGGCAACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGC
CTCTACGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCT
GGTGCTGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCG
ACGGAGGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTT
GATCTGCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGT
AACTAACACCCTTAATGGTCTATTTTGGTAGTCTAACTACTTGGTAGCTC
TTCTAAGTGTTTATAACTCAATGGTAGCCGTTTGTACTTTAATTTTGTCT
GGTTTCGTTTCGCAATTTGATACCCTGCAGTCAAATATATTCTCATTTAG
TTTTGCCCGCCCTATGAACAAATAATTAGGCTCTTTGTTTTTCAAGACTA
TATGTAGTTAGTAACTGAGTTAATATAAGTTTACAAGCTTTACACATTTG
CCTAGATTTATTTGTTATTCGCATTTTTGTTTAATTACGATCTATTTTCA
GTTTCAACAAAAGTGTTTAAATGTTGTAAAATTGTACCTATTTTAATGAA
TGCTTCCAGATAATATTACTTATTACAATTTAAAGTAGTTGTGTCGGCGT
AAATTTCTTTTTACCTTTTGTACATGTTACCGAATTTCGATTACTTTTCC
CCATATCGCCCCATTCATTGTACTCCGAGAATGTTCAAAATAAAATTGGT
GAAAGTGTTCTGGAAAAAAAAAAAAAAAAAAA

RE70427.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RB 1182 zetaCOP-RB 154..1166 3..1015 5035 99.8 Plus
zetaCOP-RA 1029 zetaCOP-RA 154..651 3..500 2490 100 Plus
zetaCOP.a 1358 zetaCOP.a 103..600 3..500 2490 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16661687..16662293 1013..407 3005 99.7 Minus
chr3L 24539361 chr3L 16662805..16663173 407..39 1845 100 Minus
chr3L 24539361 chr3L 16663229..16663266 40..3 190 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:13:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16671937..16672545 1015..407 3015 99.7 Minus
3L 28110227 3L 16673057..16673425 407..39 1845 100 Minus
3L 28110227 3L 16673481..16673518 40..3 190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16665037..16665645 1015..407 3015 99.6 Minus
3L 28103327 3L 16666157..16666525 407..39 1845 100 Minus
3L 28103327 3L 16666581..16666618 40..3 190 100 Minus
Blast to na_te.dros performed 2019-03-16 21:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 962..1019 801..744 128 69 Minus

RE70427.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:22:20 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16661687..16662292 408..1013 99 <- Minus
chr3L 16662805..16663172 40..407 100 <- Minus
chr3L 16663230..16663267 1..39 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:42 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 1..510 22..531 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:42:50 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 1..510 22..531 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:28 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 1..510 22..531 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:31:42 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 1..510 22..531 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:29 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 1..510 22..531 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:52:45 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 18..1030 1..1013 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:42:50 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 18..1030 1..1013 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:28 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 18..1030 1..1013 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:31:42 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 13..650 1..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:29 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 18..1030 1..1013 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:22:20 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16671939..16672544 408..1013 99 <- Minus
3L 16673057..16673424 40..407 100 <- Minus
3L 16673482..16673519 1..39 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:22:20 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16671939..16672544 408..1013 99 <- Minus
3L 16673057..16673424 40..407 100 <- Minus
3L 16673482..16673519 1..39 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:22:20 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16671939..16672544 408..1013 99 <- Minus
3L 16673057..16673424 40..407 100 <- Minus
3L 16673482..16673519 1..39 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:28 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16665039..16665644 408..1013 99 <- Minus
arm_3L 16666157..16666524 40..407 100 <- Minus
arm_3L 16666582..16666619 1..39 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:04:14 Download gff for RE70427.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16665039..16665644 408..1013 99 <- Minus
3L 16666157..16666524 40..407 100 <- Minus
3L 16666582..16666619 1..39 97   Minus

RE70427.hyp Sequence

Translation from 3 to 530

> RE70427.hyp
TRKQVKMDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKN
LFNKTHRSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCL
YDSISLILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVD
LRNDDIPIAEQTVAQVTNTLNGLFW*

RE70427.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-PB 169 CG3948-PB 1..169 7..175 866 100 Plus
zetaCOP-PA 174 CG3948-PA 1..160 7..166 813 100 Plus
zetaCOP-PC 163 CG3948-PC 1..149 18..166 755 100 Plus

RE70427.pep Sequence

Translation from 21 to 530

> RE70427.pep
MDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTH
RSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISL
ILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDI
PIAEQTVAQVTNTLNGLFW*

RE70427.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10509-PA 174 GF10509-PA 1..163 1..163 825 98.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15858-PA 174 GG15858-PA 1..163 1..163 817 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15229-PA 174 GH15229-PA 1..163 1..163 811 95.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-PB 169 CG3948-PB 1..169 1..169 866 100 Plus
zetaCOP-PA 174 CG3948-PA 1..160 1..160 813 100 Plus
zetaCOP-PC 163 CG3948-PC 1..149 12..160 755 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11939-PA 174 GI11939-PA 1..163 1..163 817 96.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13227-PA 174 GL13227-PA 1..163 1..163 817 97.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28587-PA 174 GA28587-PA 1..163 1..163 822 97.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24376-PA 174 GM24376-PA 1..163 1..163 820 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12449-PA 174 GD12449-PA 1..163 1..163 825 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12165-PA 174 GJ12165-PA 1..163 1..163 822 97.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25651-PA 174 GK25651-PA 1..163 1..163 821 97.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22197-PA 174 GE22197-PA 1..163 1..163 820 97.5 Plus