BDGP Sequence Production Resources |
Search the DGRC for RE70427
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 704 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | zetaCOP-RB |
Protein status: | RE70427.pep: gold |
Sequenced Size: | 1032 |
Gene | Date | Evidence |
---|---|---|
CG3948 | 2004-01-12 | Blastp of sequenced clone |
zetaCOP | 2008-04-29 | Release 5.5 accounting |
zetaCOP | 2008-08-15 | Release 5.9 accounting |
zetaCOP | 2008-12-18 | 5.12 accounting |
1032 bp (1032 high quality bases) assembled on 2004-01-12
GenBank Submission: BT011358
> RE70427.complete AGGACACGAAAACAAGTGAAGATGGACGGATTTATGATGGATATCATCAA GGGCATGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACT ACGACAAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAG AATCTGTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGA CGGACTCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGA TGGGCAACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGC CTCTACGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCT GGTGCTGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCG ACGGAGGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTT GATCTGCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGT AACTAACACCCTTAATGGTCTATTTTGGTAGTCTAACTACTTGGTAGCTC TTCTAAGTGTTTATAACTCAATGGTAGCCGTTTGTACTTTAATTTTGTCT GGTTTCGTTTCGCAATTTGATACCCTGCAGTCAAATATATTCTCATTTAG TTTTGCCCGCCCTATGAACAAATAATTAGGCTCTTTGTTTTTCAAGACTA TATGTAGTTAGTAACTGAGTTAATATAAGTTTACAAGCTTTACACATTTG CCTAGATTTATTTGTTATTCGCATTTTTGTTTAATTACGATCTATTTTCA GTTTCAACAAAAGTGTTTAAATGTTGTAAAATTGTACCTATTTTAATGAA TGCTTCCAGATAATATTACTTATTACAATTTAAAGTAGTTGTGTCGGCGT AAATTTCTTTTTACCTTTTGTACATGTTACCGAATTTCGATTACTTTTCC CCATATCGCCCCATTCATTGTACTCCGAGAATGTTCAAAATAAAATTGGT GAAAGTGTTCTGGAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16661687..16662293 | 1013..407 | 3005 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 16662805..16663173 | 407..39 | 1845 | 100 | Minus |
chr3L | 24539361 | chr3L | 16663229..16663266 | 40..3 | 190 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16671937..16672545 | 1015..407 | 3015 | 99.7 | Minus |
3L | 28110227 | 3L | 16673057..16673425 | 407..39 | 1845 | 100 | Minus |
3L | 28110227 | 3L | 16673481..16673518 | 40..3 | 190 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16665037..16665645 | 1015..407 | 3015 | 99.6 | Minus |
3L | 28103327 | 3L | 16666157..16666525 | 407..39 | 1845 | 100 | Minus |
3L | 28103327 | 3L | 16666581..16666618 | 40..3 | 190 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord | 7404 | accord ACCORD 7404bp | 962..1019 | 801..744 | 128 | 69 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16661687..16662292 | 408..1013 | 99 | <- | Minus |
chr3L | 16662805..16663172 | 40..407 | 100 | <- | Minus |
chr3L | 16663230..16663267 | 1..39 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zetaCOP-RB | 1..510 | 22..531 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zetaCOP-RB | 1..510 | 22..531 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zetaCOP-RB | 1..510 | 22..531 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zetaCOP-RB | 1..510 | 22..531 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zetaCOP-RB | 1..510 | 22..531 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zetaCOP-RB | 18..1030 | 1..1013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zetaCOP-RB | 18..1030 | 1..1013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zetaCOP-RB | 18..1030 | 1..1013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zetaCOP-RB | 13..650 | 1..638 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
zetaCOP-RB | 18..1030 | 1..1013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16671939..16672544 | 408..1013 | 99 | <- | Minus |
3L | 16673057..16673424 | 40..407 | 100 | <- | Minus |
3L | 16673482..16673519 | 1..39 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16671939..16672544 | 408..1013 | 99 | <- | Minus |
3L | 16673057..16673424 | 40..407 | 100 | <- | Minus |
3L | 16673482..16673519 | 1..39 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16671939..16672544 | 408..1013 | 99 | <- | Minus |
3L | 16673057..16673424 | 40..407 | 100 | <- | Minus |
3L | 16673482..16673519 | 1..39 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16665039..16665644 | 408..1013 | 99 | <- | Minus |
arm_3L | 16666157..16666524 | 40..407 | 100 | <- | Minus |
arm_3L | 16666582..16666619 | 1..39 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16665039..16665644 | 408..1013 | 99 | <- | Minus |
3L | 16666157..16666524 | 40..407 | 100 | <- | Minus |
3L | 16666582..16666619 | 1..39 | 97 | Minus |
Translation from 3 to 530
> RE70427.hyp TRKQVKMDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKN LFNKTHRSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCL YDSISLILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVD LRNDDIPIAEQTVAQVTNTLNGLFW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
zetaCOP-PB | 169 | CG3948-PB | 1..169 | 7..175 | 866 | 100 | Plus |
zetaCOP-PA | 174 | CG3948-PA | 1..160 | 7..166 | 813 | 100 | Plus |
zetaCOP-PC | 163 | CG3948-PC | 1..149 | 18..166 | 755 | 100 | Plus |
Translation from 21 to 530
> RE70427.pep MDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTH RSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISL ILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDI PIAEQTVAQVTNTLNGLFW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10509-PA | 174 | GF10509-PA | 1..163 | 1..163 | 825 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15858-PA | 174 | GG15858-PA | 1..163 | 1..163 | 817 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15229-PA | 174 | GH15229-PA | 1..163 | 1..163 | 811 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
zetaCOP-PB | 169 | CG3948-PB | 1..169 | 1..169 | 866 | 100 | Plus |
zetaCOP-PA | 174 | CG3948-PA | 1..160 | 1..160 | 813 | 100 | Plus |
zetaCOP-PC | 163 | CG3948-PC | 1..149 | 12..160 | 755 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11939-PA | 174 | GI11939-PA | 1..163 | 1..163 | 817 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13227-PA | 174 | GL13227-PA | 1..163 | 1..163 | 817 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28587-PA | 174 | GA28587-PA | 1..163 | 1..163 | 822 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24376-PA | 174 | GM24376-PA | 1..163 | 1..163 | 820 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12449-PA | 174 | GD12449-PA | 1..163 | 1..163 | 825 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12165-PA | 174 | GJ12165-PA | 1..163 | 1..163 | 822 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25651-PA | 174 | GK25651-PA | 1..163 | 1..163 | 821 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22197-PA | 174 | GE22197-PA | 1..163 | 1..163 | 820 | 97.5 | Plus |