Clone RE70461 Report

Search the DGRC for RE70461

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:704
Well:61
Vector:pFlc-1
Associated Gene/TranscriptCG14234-RA
Protein status:RE70461.pep: gold
Preliminary Size:1146
Sequenced Size:3647

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14234 2002-01-01 Sim4 clustering to Release 2
CG14234 2002-04-22 Blastp of sequenced clone
CG14234 2003-01-01 Sim4 clustering to Release 3
CG14234 2008-04-29 Release 5.5 accounting
CG14234 2008-08-15 Release 5.9 accounting
CG14234 2008-12-18 5.12 accounting

Clone Sequence Records

RE70461.complete Sequence

3647 bp (3647 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113549

> RE70461.complete
ACAAGCTATTCTGGCTTGGCCCCGATTGTAACGAATCCGTATCGCACGTC
GCAGTGCGAAAATGTGTGCAAATACTGCAATGTACCCGCAGTAAATTGGC
CGCAGGATCGCTTGACACTCGCTGCAAAAGGACATCCAGGTGCTACGCCC
TATTTCGCAGTCAATCCAGCCAGGTGGTAGTATAGGTGTACAGGCATAGG
TGTAACCAACCATGCCCCTGCGAACGGTGCAGGAATGCGGAGTCCTTTTG
TGCCAGTGAAGAGCAACCAACACGAAACAACGCCACGAAGAGGACAATCC
GCCAGTGCTGTGTAGAAGAACAAGAACCAGAACAACAAGGACAAGACCAA
GAGCATCGAGTACACCAGATCGCAGATTCCGTTGAGAAGGGTCCGCCAAA
AATTAGTCCGCCGGAATGAGGGTGGCGGCGGACATGGTGTATGACTACGG
CAGCGAGGACTCCATGAGCACCACCCACCTGGACTGGCCCTTTCTCATCA
AGGGCATCCTGGAGGGGCAGACGTGCACGCCCACTGCGCCGGAGCCGCTG
GCCGCCATCCTGTGGGCCATCTTCGCCGTGTTTGGCATCGTGTACGCGCT
ACTCGGCTACCGATGCCTGCGCGCCGTGGGCTTTCTCAGTGGACTGCTGG
TGGGCGCCAACGGGATCTTCATTCTGCAGGACTTCCAGATCACCTTCCTG
GGCAAGCCGGCGGACTCGGCGCTGGCCATTGTGGCGGGTTTGCTGGGCGC
GGTGCTCGGCTCCACATATCCGGTGGCCTCTGTCCTCATTAGCGCCTTTG
CCGGCGCCCTGCTCTCCGGCGCAGCCATGGCCGTCTGCGTGGCCACCTTT
CCGGACAACGAGTTTGGGTACCGCGAGATCTATGTGGCCGTGGTGGGTGG
AGCCGTCATCTGCTCCGTGCTGACCTTGTGCTGCGTGAAGTACGTGACCA
TTCTCACCTCCAGCATTGTGGGCACGGCCATGATCCTCAGCGCCATCGAC
TTCTTCACGCACGGTCTGGAGACCATCAATTGGATAATCGGCATGCGGCC
GCATCCCTCGCCGCCACCTTGCTACGGTGGCCTCCTGATCGCCGCCTGGC
CCGTCACCATTGTGCTCAGCATCATGGTGCAGTGCTTCATTACCGCCTGG
CGCGTGGATCACCGCAAGCGGGTGTACATGCGGCATCACAACCATCCTGG
CCACGCGCACGGCGCCCATCTGCCGCACAGCCAGCAGCAGGCGGGACCCA
ACCACGGCATCGCTCCCGTCCGGCGATCCCAATCCCGCACCCGGGAGACG
CGCGAGGAGGCCAGGCAGCGCAAGTTCCGCTATCTGTACCAGGTGCGCAC
GGCCCGTGGTGACATCATATCGCAGAACTTCGTGTCGGCTCTGCAGAAGC
GCATCCAGCTGAGCGGCACGGAGACGCCGTCGGAGAGATCGATAAAGAGC
AGCTCAAACGAACGAAACACGTTCCGGAGCGACCGCACGCACTTCACCAC
CATCCACGATCCGGACTCGGAGCTGTGCGACAAGATCGAGATCGTCCGTG
ACATTGGATAACAAACAAGCAATAGCTACATGTAACTATACCCGTAGGGG
GGCTACGGGCTGCGGTACTTGGGCGCGGATGTGGTCATGGTCGGGGGACA
CAACTGTATGGTTGGATAGTTAAACGGGATTGGGGGCTCTAGGGAGCCGC
CACGTAGAGCGGCGGAGGACTCACACAAGTACGGTTGCATGTAGACTTTT
TAAGACGAGGCACCAAGTGCCGGACACAACACAAACGGAAGCGGAAATGG
TGGCACAGAACCGAGTGGATGGTCATTGGAAGCTTTAAATATCAGAGGAT
ATACGACGGATCTTTAGCTGGTTTCGCATGGAAGCCTTGGAGCTGGCGCC
AGCCACAGATCAGGGGGACGAGATAGTCTAGACTAAGATTAATCGCATCG
TGCACAGCTAGAGTCTAAGATGATGGACAGCACGGAAGGAAGCTGGCAGG
AAGCTTTTGTTCTCTTCACTTAATCGAATGTTACTACAGATAGGAATACC
TACACTACATATGTATGTAGCGATGGGCTGCGTGATGCATGATTGTGGTG
GTGGATCATGGGTGCCTGAGATTCCTGTAACTACACTATACCCAACGCAG
TACTCGTAGCTTCTCCCTTTTTCGTATATAGCCAGGCAATTGCAATTACT
AATCCGGTTCATATCTGTGTTATAACTCTACGATTATAATGGGATGCATC
CCAGCTGCAGGAGTTCCATTTCAACTATCTAGCATGATATTTATATATAT
AAGCATTACGTTGTAAACTCCAAACACTCGATCATCGCACAGCAGTTTCT
CGGAGGCTCAAGGCAGGCGAAAATACAATACAATACCTATTAAGTACAAT
AAGAGAGGGTGGGGAGGGGGAGGGGGAAGTTGGAGCCATAGCCATCTAGA
CTAGTAGTAGACTAGAACTAGGATTAGCCAGTTACCCGGATGAGCCAAAG
CCACTAAGCCACTTAATTGTCGATACCAGTAAATCACAATCCGCTGCAAG
GGGCGCACTTGGGGCTCGACCAAGTCAGAATCCAACGATCCGCTCGATCA
GCCGTCTTAGCGTTATCCGTAAGATTAGCGTTCGAAATATATATATATAT
ATATATATATATATACTTTAAGACATTAGATCCATGCAAACAGCGGTACA
AACTTCAGAAATTCACGCTATATATGCTAGCCGAGACATACCAATTTAAG
TGATATAAAGCATTTTAAACGGTCTGATTATGGGGCTTAATCGGGTTACT
GGAGCGAAATGAGTCCGTGCATCTGGTTTTCAGAAGTCTTGTGGTCGTCT
TCCATCCGCTTTTGTTTCCAAGCAACATTACATTTCATTTCAAAGTACGG
ACGTATTTCTCAATCCACAGTACGGATTAAGCCCTTTTAGCTGGACACAC
CTACAACCAATAAATAGATAAAGTGATGCGTTTAGGGGAAGAACTAGAAC
TGGAAGGGTTCTTTCTCCAAGCCGCAAAGAAGGATTGGACATTGCCGGGC
AGGAACTTCCATGTCGAATCGGTTGGTTTCCAAGTCGCAAACACCTATAC
TAAATACAACTCGAGTTTCCTGTTAAGTTGATTAGCAATTAGTTTCTAGG
AATGGCTGCCGTCCGCAATTGTTGATTTATTACTATCGAAGACTATAGAC
TTTATATTTCCGAATTTTGTTCTCAAACTCAAGTGCTTATACTTTGATTC
CTATTAGTTGTTCACTCTATCCTCCTGTCGTTCTAATGTTCAACAGCAAT
GTCTAATGCAGCACGATAATGCATTTAACTTCGGCAAACAGTAGACGTTT
TGTACGACACACTCAATTCGGTTTAATAAAATATATATATAAAAAAAAAG
GATAATAACTGCAAACTAAAGTAGTGAAAATCATAAAAAGAGTTGCACAC
ATGTATACACCACTAATGAAATCCAATTAAAAACTAATATAACAAAAAGG
CCAAAAGCGATTATAACCAGAAAGAATCCGATTTCCGAATGAAATCAAGT
CTTGAGACGACGGGCTGCCAAAGATTAAACAACTTGTAATGAGCAAACAG
AAAAGTAATATTAAATAAACGATGCAGGCCGAAAAAAAAAAAAAAAA

RE70461.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-RA 3749 CG14234-RA 116..3745 1..3630 18135 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19626901..19629155 1372..3630 10760 98.8 Plus
chrX 22417052 chrX 19624282..19624784 1..503 2470 99.4 Plus
chrX 22417052 chrX 19625702..19626069 501..868 1825 99.7 Plus
chrX 22417052 chrX 19626408..19626750 1033..1375 1715 100 Plus
chrX 22417052 chrX 19626131..19626296 868..1033 800 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:13:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19738194..19740452 1372..3630 11280 100 Plus
X 23542271 X 19735574..19736076 1..503 2515 100 Plus
X 23542271 X 19736994..19737361 501..868 1840 100 Plus
X 23542271 X 19737701..19738043 1033..1375 1715 100 Plus
X 23542271 X 19737423..19737588 868..1033 830 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19746292..19748550 1372..3630 11280 99.9 Plus
X 23527363 X 19743672..19744174 1..503 2515 100 Plus
X 23527363 X 19745092..19745459 501..868 1840 100 Plus
X 23527363 X 19745799..19746141 1033..1375 1715 100 Plus
X 23527363 X 19745521..19745686 868..1033 830 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:38:38 has no hits.

RE70461.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:39:25 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19624282..19624783 1..502 99 -> Plus
chrX 19625704..19626069 503..868 99 -> Plus
chrX 19626132..19626296 869..1033 98 -> Plus
chrX 19626409..19626750 1034..1375 100 -> Plus
chrX 19626905..19629155 1376..3631 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:43 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 1..1146 416..1561 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:57:46 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 1..1146 416..1561 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:06:39 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 1..1146 416..1561 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:51:06 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 1..1146 416..1561 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:32 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 1..1146 416..1561 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:37:47 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 1..3630 1..3631 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:57:46 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 1..3630 1..3631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:39 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 5..3634 1..3631 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:51:06 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 1..3630 1..3631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:32 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 5..3634 1..3631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:25 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
X 19735574..19736075 1..502 100 -> Plus
X 19736996..19737361 503..868 100 -> Plus
X 19737424..19737588 869..1033 100 -> Plus
X 19737702..19738043 1034..1375 100 -> Plus
X 19738198..19740452 1376..3631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:25 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
X 19735574..19736075 1..502 100 -> Plus
X 19736996..19737361 503..868 100 -> Plus
X 19737424..19737588 869..1033 100 -> Plus
X 19737702..19738043 1034..1375 100 -> Plus
X 19738198..19740452 1376..3631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:25 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
X 19735574..19736075 1..502 100 -> Plus
X 19736996..19737361 503..868 100 -> Plus
X 19737424..19737588 869..1033 100 -> Plus
X 19737702..19738043 1034..1375 100 -> Plus
X 19738198..19740452 1376..3631 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:39 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19629607..19630108 1..502 100 -> Plus
arm_X 19631029..19631394 503..868 100 -> Plus
arm_X 19631457..19631621 869..1033 100 -> Plus
arm_X 19631735..19632076 1034..1375 100 -> Plus
arm_X 19632231..19634485 1376..3631 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:23:03 Download gff for RE70461.complete
Subject Subject Range Query Range Percent Splice Strand
X 19743672..19744173 1..502 100 -> Plus
X 19745094..19745459 503..868 100 -> Plus
X 19745522..19745686 869..1033 100 -> Plus
X 19745800..19746141 1034..1375 100 -> Plus
X 19746296..19748550 1376..3631 99   Plus

RE70461.hyp Sequence

Translation from 415 to 1560

> RE70461.hyp
MRVAADMVYDYGSEDSMSTTHLDWPFLIKGILEGQTCTPTAPEPLAAILW
AIFAVFGIVYALLGYRCLRAVGFLSGLLVGANGIFILQDFQITFLGKPAD
SALAIVAGLLGAVLGSTYPVASVLISAFAGALLSGAAMAVCVATFPDNEF
GYREIYVAVVGGAVICSVLTLCCVKYVTILTSSIVGTAMILSAIDFFTHG
LETINWIIGMRPHPSPPPCYGGLLIAAWPVTIVLSIMVQCFITAWRVDHR
KRVYMRHHNHPGHAHGAHLPHSQQQAGPNHGIAPVRRSQSRTRETREEAR
QRKFRYLYQVRTARGDIISQNFVSALQKRIQLSGTETPSERSIKSSSNER
NTFRSDRTHFTTIHDPDSELCDKIEIVRDIG*

RE70461.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-PA 381 CG14234-PA 1..381 1..381 1986 100 Plus

RE70461.pep Sequence

Translation from 415 to 1560

> RE70461.pep
MRVAADMVYDYGSEDSMSTTHLDWPFLIKGILEGQTCTPTAPEPLAAILW
AIFAVFGIVYALLGYRCLRAVGFLSGLLVGANGIFILQDFQITFLGKPAD
SALAIVAGLLGAVLGSTYPVASVLISAFAGALLSGAAMAVCVATFPDNEF
GYREIYVAVVGGAVICSVLTLCCVKYVTILTSSIVGTAMILSAIDFFTHG
LETINWIIGMRPHPSPPPCYGGLLIAAWPVTIVLSIMVQCFITAWRVDHR
KRVYMRHHNHPGHAHGAHLPHSQQQAGPNHGIAPVRRSQSRTRETREEAR
QRKFRYLYQVRTARGDIISQNFVSALQKRIQLSGTETPSERSIKSSSNER
NTFRSDRTHFTTIHDPDSELCDKIEIVRDIG*

RE70461.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20214-PA 384 GF20214-PA 1..384 1..381 1898 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19252-PA 381 GG19252-PA 1..381 1..381 2019 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17691-PA 429 GH17691-PA 57..429 6..381 1639 84.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-PA 381 CG14234-PA 1..381 1..381 1986 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16099-PA 409 GI16099-PA 30..409 6..381 1679 84.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15015-PA 383 GL15015-PA 1..383 1..381 1804 91.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12847-PA 383 GA12847-PA 1..383 1..381 1812 92.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22989-PA 267 GM22989-PA 1..206 1..206 1061 99.5 Plus
Dsec\GM22989-PA 267 GM22989-PA 202..267 316..381 333 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15747-PA 403 GJ15747-PA 31..403 6..381 1700 86.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17356-PA 404 GK17356-PA 1..404 1..381 1655 80.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15871-PA 62 GE15871-PA 1..41 1..46 160 71.7 Plus