Clone RE70477 Report

Search the DGRC for RE70477

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:704
Well:77
Vector:pFlc-1
Associated Gene/TranscriptCG43325-RA
Protein status:RE70477.pep: gold
Preliminary Size:1467
Sequenced Size:1240

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30217 2001-12-16 Blastp of sequenced clone
CG13514 2002-01-01 Sim4 clustering to Release 2
CG30217 2003-01-01 Sim4 clustering to Release 3
CG30217 2008-04-29 Release 5.5 accounting
CG30217 2008-08-15 Release 5.9 accounting
CG30217 2008-12-18 5.12 accounting

Clone Sequence Records

RE70477.complete Sequence

1240 bp (1240 high quality bases) assembled on 2001-12-16

GenBank Submission: AY071646

> RE70477.complete
GGGTCAGTTCAACAACATGAGCCGTCAGCTAAAGTTCCACCTTCAAGCTC
CCGACGACGAGGAGTTCGCAGCGGATCTGGTGGAGATTAACCTGAACCCC
AACTGCGGCCAGGTCAAGCAGAAGTCGGCTCAGGCCTTGGACCAGCTGCT
CCTGGCCACGCCCCCACACAGAGGCTATCCCTACGGCTATGCCGAGGACT
CCGAGCCGGATACCTACTTCTGCCGGAAGAGCAACTCCACAGGCCAACTG
GCCGAGAAGGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCT
CCGCCAGATGTACTGTCCGGAGTGCCACGAGCGATTGCACGAGCAGGGAG
TCCGCCTGGAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATC
TATCCCTGCTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCGG
CAAGTGTGGTTACCTCTTGGGGGCATGGAAAAGACAGTGAGATGAAGGGA
TGGGGGACGTGGGTTGGGGCAAACGGAGTGGGTGCTCCGCTTATAATTGT
TTGTTTTGTTTAGTTTTTAAGCACTTTTTGTTGACCTTGCGGCGAGTGAT
GAGCGCTGCTGAGACTGAAGAGCCGAGTGCCAAAAAATTGTTGATTGCTG
CATGATTCTCTCAGTGGTTTCTCTTCAATTAGATCTCTTTGGTCAGATAG
ATCTCTTTTTCGAATTTCACTGCCTCGGGATTCGCCAAAATGTTTAGCAC
TTGACGCCGGCCAGTCGCAATGTCTCGGGGAAACGACTTGGATGCGGATC
TGGAGGTGGATCTCCAGGAGGGGGACAGGGATAGCCAGTCGGCGGCCACC
ACTGTCACGCTGGAGGAGCGCCCTAGCAAACCCCAGGTGCGATTCTTCAG
CATCGGACCCAGCAGCTACCAGGTGCGGTGTCCATTGTGCCAGCAGAATT
CGAAAACGGAAACCGTGGAGATGACAGGAGCACTGGGCCAGCTCAGTTGC
CTCTTGTCCACTTTATCCTGTTGCTTTCCCATCTTTGCTTTGACGTTCGT
CTATTCCTGTCTGCAAAGTCGCCTGAAATCGAAGCGTGTCTTCTGCAGCC
GATGCGGTGGTCACCTGGGCTTCCACTGGCGTCCCACTTAGTGCGTCTGC
CACTCAGATGGCTCTCTGAAATCCACGCAAATGATCTATAAATAAACCGG
CAGCTGTTGTCAAATTTTTTTTAATAAAAAAAAAAAAAAA

RE70477.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG30217-RA 1310 CG30217-RA 73..1297 3..1227 6110 99.9 Plus
CG30217-RB 919 CG30217-RB 458..919 764..1225 2310 100 Plus
CG30217-RB 919 CG30217-RB 3..458 3..458 2280 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18542387..18543030 1020..378 3020 98.3 Minus
chr2R 21145070 chr2R 18543182..18543557 378..3 1805 98.7 Minus
chr2R 21145070 chr2R 18542113..18542318 1225..1020 985 98.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22655823..22656465 1020..378 3200 99.8 Minus
2R 25286936 2R 22656617..22656992 378..3 1880 100 Minus
2R 25286936 2R 22655547..22655754 1227..1020 1040 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22657022..22657664 1020..378 3200 99.8 Minus
2R 25260384 2R 22657816..22658191 378..3 1880 100 Minus
2R 25260384 2R 22656746..22656953 1227..1020 1040 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:38:48 has no hits.

RE70477.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:39:30 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18542113..18542317 1021..1225 98 <- Minus
chr2R 18542387..18543029 379..1020 98 <- Minus
chr2R 18543182..18543559 1..378 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:47 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:08 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:06:44 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
CG43325-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:25:44 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:43 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
CG43325-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:27:23 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 1..1225 2..1225 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:08 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 1..1225 2..1225 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:44 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
CG43325-RA 5..1229 1..1225 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:25:45 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 1..1225 2..1225 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:43 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
CG43325-RA 5..1229 1..1225 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:30 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22655549..22655753 1021..1225 100 <- Minus
2R 22655823..22656464 379..1020 99 <- Minus
2R 22656617..22656994 1..378 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:30 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22655549..22655753 1021..1225 100 <- Minus
2R 22655823..22656464 379..1020 99 <- Minus
2R 22656617..22656994 1..378 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:30 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22655549..22655753 1021..1225 100 <- Minus
2R 22655823..22656464 379..1020 99 <- Minus
2R 22656617..22656994 1..378 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:44 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18543054..18543258 1021..1225 100 <- Minus
arm_2R 18543328..18543969 379..1020 99 <- Minus
arm_2R 18544122..18544499 1..378 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:01:17 Download gff for RE70477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22657022..22657663 379..1020 99 <- Minus
2R 22657816..22658193 1..378 99   Minus
2R 22656748..22656952 1021..1225 100 <- Minus

RE70477.hyp Sequence

Translation from 0 to 489

> RE70477.hyp
SQFNNMSRQLKFHLQAPDDEEFAADLVEINLNPNCGQVKQKSAQALDQLL
LATPPHRGYPYGYAEDSEPDTYFCRKSNSTGQLAEKVSPPPPAATNISCL
RQMYCPECHERLHEQGVRLERLLTMCCFALLPIYPCCPRRSTNDCKVICG
KCGYLLGAWKRQ*

RE70477.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG43325-PC 157 CG43325-PC 1..157 6..162 871 100 Plus
CG43325-PB 157 CG30217-PB 1..157 6..162 871 100 Plus
CG43325-PA 157 CG30217-PA 1..157 6..162 871 100 Plus

RE70477.pep Sequence

Translation from 16 to 489

> RE70477.pep
MSRQLKFHLQAPDDEEFAADLVEINLNPNCGQVKQKSAQALDQLLLATPP
HRGYPYGYAEDSEPDTYFCRKSNSTGQLAEKVSPPPPAATNISCLRQMYC
PECHERLHEQGVRLERLLTMCCFALLPIYPCCPRRSTNDCKVICGKCGYL
LGAWKRQ*

RE70477.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13576-PA 269 GF13576-PA 1..146 1..146 716 89.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21769-PA 271 GG21769-PA 1..146 1..146 747 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22101-PA 274 GH22101-PA 1..156 1..153 627 76.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG43325-PC 157 CG43325-PC 1..157 1..157 871 100 Plus
CG43325-PB 157 CG30217-PB 1..157 1..157 871 100 Plus
CG43325-PA 157 CG30217-PA 1..157 1..157 871 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19236-PA 275 GI19236-PA 1..153 1..146 549 71.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10713-PA 283 GL10713-PA 1..159 1..147 631 78.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15726-PA 283 GA15726-PA 1..159 1..147 632 78.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15617-PA 271 GM15617-PA 1..146 1..146 770 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25111-PA 271 GD25111-PA 1..146 1..146 765 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20311-PA 278 GJ20311-PA 1..153 1..147 556 76.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21849-PA 269 GK21849-PA 1..152 1..147 530 70.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11844-PA 271 GE11844-PA 1..146 1..146 756 96.6 Plus