BDGP Sequence Production Resources |
Search the DGRC for RE70477
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 704 |
Well: | 77 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG43325-RA |
Protein status: | RE70477.pep: gold |
Preliminary Size: | 1467 |
Sequenced Size: | 1240 |
Gene | Date | Evidence |
---|---|---|
CG30217 | 2001-12-16 | Blastp of sequenced clone |
CG13514 | 2002-01-01 | Sim4 clustering to Release 2 |
CG30217 | 2003-01-01 | Sim4 clustering to Release 3 |
CG30217 | 2008-04-29 | Release 5.5 accounting |
CG30217 | 2008-08-15 | Release 5.9 accounting |
CG30217 | 2008-12-18 | 5.12 accounting |
1240 bp (1240 high quality bases) assembled on 2001-12-16
GenBank Submission: AY071646
> RE70477.complete GGGTCAGTTCAACAACATGAGCCGTCAGCTAAAGTTCCACCTTCAAGCTC CCGACGACGAGGAGTTCGCAGCGGATCTGGTGGAGATTAACCTGAACCCC AACTGCGGCCAGGTCAAGCAGAAGTCGGCTCAGGCCTTGGACCAGCTGCT CCTGGCCACGCCCCCACACAGAGGCTATCCCTACGGCTATGCCGAGGACT CCGAGCCGGATACCTACTTCTGCCGGAAGAGCAACTCCACAGGCCAACTG GCCGAGAAGGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCT CCGCCAGATGTACTGTCCGGAGTGCCACGAGCGATTGCACGAGCAGGGAG TCCGCCTGGAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATC TATCCCTGCTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCGG CAAGTGTGGTTACCTCTTGGGGGCATGGAAAAGACAGTGAGATGAAGGGA TGGGGGACGTGGGTTGGGGCAAACGGAGTGGGTGCTCCGCTTATAATTGT TTGTTTTGTTTAGTTTTTAAGCACTTTTTGTTGACCTTGCGGCGAGTGAT GAGCGCTGCTGAGACTGAAGAGCCGAGTGCCAAAAAATTGTTGATTGCTG CATGATTCTCTCAGTGGTTTCTCTTCAATTAGATCTCTTTGGTCAGATAG ATCTCTTTTTCGAATTTCACTGCCTCGGGATTCGCCAAAATGTTTAGCAC TTGACGCCGGCCAGTCGCAATGTCTCGGGGAAACGACTTGGATGCGGATC TGGAGGTGGATCTCCAGGAGGGGGACAGGGATAGCCAGTCGGCGGCCACC ACTGTCACGCTGGAGGAGCGCCCTAGCAAACCCCAGGTGCGATTCTTCAG CATCGGACCCAGCAGCTACCAGGTGCGGTGTCCATTGTGCCAGCAGAATT CGAAAACGGAAACCGTGGAGATGACAGGAGCACTGGGCCAGCTCAGTTGC CTCTTGTCCACTTTATCCTGTTGCTTTCCCATCTTTGCTTTGACGTTCGT CTATTCCTGTCTGCAAAGTCGCCTGAAATCGAAGCGTGTCTTCTGCAGCC GATGCGGTGGTCACCTGGGCTTCCACTGGCGTCCCACTTAGTGCGTCTGC CACTCAGATGGCTCTCTGAAATCCACGCAAATGATCTATAAATAAACCGG CAGCTGTTGTCAAATTTTTTTTAATAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 18542387..18543030 | 1020..378 | 3020 | 98.3 | Minus |
chr2R | 21145070 | chr2R | 18543182..18543557 | 378..3 | 1805 | 98.7 | Minus |
chr2R | 21145070 | chr2R | 18542113..18542318 | 1225..1020 | 985 | 98.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 22655823..22656465 | 1020..378 | 3200 | 99.8 | Minus |
2R | 25286936 | 2R | 22656617..22656992 | 378..3 | 1880 | 100 | Minus |
2R | 25286936 | 2R | 22655547..22655754 | 1227..1020 | 1040 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 22657022..22657664 | 1020..378 | 3200 | 99.8 | Minus |
2R | 25260384 | 2R | 22657816..22658191 | 378..3 | 1880 | 100 | Minus |
2R | 25260384 | 2R | 22656746..22656953 | 1227..1020 | 1040 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 18542113..18542317 | 1021..1225 | 98 | <- | Minus |
chr2R | 18542387..18543029 | 379..1020 | 98 | <- | Minus |
chr2R | 18543182..18543559 | 1..378 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30217-RA | 1..474 | 17..490 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30217-RA | 1..474 | 17..490 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43325-RA | 1..474 | 17..490 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30217-RA | 1..474 | 17..490 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43325-RA | 1..474 | 17..490 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30217-RA | 1..1225 | 2..1225 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30217-RA | 1..1225 | 2..1225 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43325-RA | 5..1229 | 1..1225 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30217-RA | 1..1225 | 2..1225 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43325-RA | 5..1229 | 1..1225 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22655549..22655753 | 1021..1225 | 100 | <- | Minus |
2R | 22655823..22656464 | 379..1020 | 99 | <- | Minus |
2R | 22656617..22656994 | 1..378 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22655549..22655753 | 1021..1225 | 100 | <- | Minus |
2R | 22655823..22656464 | 379..1020 | 99 | <- | Minus |
2R | 22656617..22656994 | 1..378 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22655549..22655753 | 1021..1225 | 100 | <- | Minus |
2R | 22655823..22656464 | 379..1020 | 99 | <- | Minus |
2R | 22656617..22656994 | 1..378 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 18543054..18543258 | 1021..1225 | 100 | <- | Minus |
arm_2R | 18543328..18543969 | 379..1020 | 99 | <- | Minus |
arm_2R | 18544122..18544499 | 1..378 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22657022..22657663 | 379..1020 | 99 | <- | Minus |
2R | 22657816..22658193 | 1..378 | 99 | Minus | |
2R | 22656748..22656952 | 1021..1225 | 100 | <- | Minus |
Translation from 0 to 489
> RE70477.hyp SQFNNMSRQLKFHLQAPDDEEFAADLVEINLNPNCGQVKQKSAQALDQLL LATPPHRGYPYGYAEDSEPDTYFCRKSNSTGQLAEKVSPPPPAATNISCL RQMYCPECHERLHEQGVRLERLLTMCCFALLPIYPCCPRRSTNDCKVICG KCGYLLGAWKRQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG43325-PC | 157 | CG43325-PC | 1..157 | 6..162 | 871 | 100 | Plus |
CG43325-PB | 157 | CG30217-PB | 1..157 | 6..162 | 871 | 100 | Plus |
CG43325-PA | 157 | CG30217-PA | 1..157 | 6..162 | 871 | 100 | Plus |
Translation from 16 to 489
> RE70477.pep MSRQLKFHLQAPDDEEFAADLVEINLNPNCGQVKQKSAQALDQLLLATPP HRGYPYGYAEDSEPDTYFCRKSNSTGQLAEKVSPPPPAATNISCLRQMYC PECHERLHEQGVRLERLLTMCCFALLPIYPCCPRRSTNDCKVICGKCGYL LGAWKRQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13576-PA | 269 | GF13576-PA | 1..146 | 1..146 | 716 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21769-PA | 271 | GG21769-PA | 1..146 | 1..146 | 747 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22101-PA | 274 | GH22101-PA | 1..156 | 1..153 | 627 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG43325-PC | 157 | CG43325-PC | 1..157 | 1..157 | 871 | 100 | Plus |
CG43325-PB | 157 | CG30217-PB | 1..157 | 1..157 | 871 | 100 | Plus |
CG43325-PA | 157 | CG30217-PA | 1..157 | 1..157 | 871 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19236-PA | 275 | GI19236-PA | 1..153 | 1..146 | 549 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10713-PA | 283 | GL10713-PA | 1..159 | 1..147 | 631 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15726-PA | 283 | GA15726-PA | 1..159 | 1..147 | 632 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15617-PA | 271 | GM15617-PA | 1..146 | 1..146 | 770 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25111-PA | 271 | GD25111-PA | 1..146 | 1..146 | 765 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20311-PA | 278 | GJ20311-PA | 1..153 | 1..147 | 556 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21849-PA | 269 | GK21849-PA | 1..152 | 1..147 | 530 | 70.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11844-PA | 271 | GE11844-PA | 1..146 | 1..146 | 756 | 96.6 | Plus |