Clone RE70560 Report

Search the DGRC for RE70560

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:705
Well:60
Vector:pFlc-1
Associated Gene/TranscriptT-cp1-RA
Protein status:RE70560.pep: gold
Preliminary Size:1969
Sequenced Size:1992

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5374 2002-01-01 Sim4 clustering to Release 2
CG5374 2002-05-23 Blastp of sequenced clone
CG5374 2003-01-01 Sim4 clustering to Release 3
T-cp1 2008-04-29 Release 5.5 accounting
T-cp1 2008-08-15 Release 5.9 accounting
T-cp1 2008-12-18 5.12 accounting

Clone Sequence Records

RE70560.complete Sequence

1992 bp (1992 high quality bases) assembled on 2002-05-23

GenBank Submission: AY118416

> RE70560.complete
GTTCATCTCGAAGTCTTAAAGTGAGTCAGGCGGTTTAACGTGCGGTTTTT
CAGCGTATTTGATTTATCTGTTTTTTATTAAAAGTCGCGGAAGAACTTAG
GAAAATGTCGACCCTGGCCTCTCCTCTGTCCATTGCTGGCACCCGCCAAT
CCGGCGCATCGGTGCGCACACAGAACGTTATGGCCGCTCTGTCCATATCG
AACATCGTGAAAAGCTCCTTGGGACCCGTGGGTCTGGACAAGATGCTGGT
GGACGACATCGGCGATGTCACAGTGACCAACGATGGAGCCACCATTCTGC
GACTGCTGGAGGTGGAGCACCCGGCAGCCAAGGTCCTGGTTGAGCTGGCT
CAGCTGCAGGACGAGGAGGTCGGCGATGGCACTACCTCGGTGGTTATCCT
GGCCGCTGAGCTGCTGAAAAACGCCGACGAGCTGGTCAAGCAGAAGATTC
ATCCTACCTCCATAATCTCCGGCTACCGCATTGCCTGCAAGGAGGCCTGC
AAGTACATCTCGGAGCATCTGACCGCTCCCGTTGATGAGCTGGGCCGCGA
TTCCCTGATTAACATTGCCAAGACCTCGATGAGCTCCAAGATCATTGGTG
CTGACGCAGAGTTCTTCTCAGCCATGGTTGTGGACGCTGCCCAGTCGGTG
AAAATCACAGATCCCCGTGGGCAGGCAGCCTATTCGATTAAAGCCATCAA
TGTCCTGAAGGCCCATGGCAAGTCTGCCAGGGAATCGGTGCTGATTCCCG
GCTATGCCTTGAACTGCACAATTGCCTCCCAGCAGATGCCCAAGAAGATT
GTGAACGCCAAGATTGCCTGCCTAGACTTCTCGCTGCAGAAGACCAAGAT
GAAGATGGGTGTCCAGGTCTTGATCAATGATCCCGACAAGCTGGAGGCTA
TTCGTGCCCGTGAGCTGGACATTACCAAGGAGCGCATCAACATGATCCTC
GGAACCGGTGTCAATGTAGTACTGGTTAGCGGCGGCGTTGATGATTTGTG
CATGAAGTACTTCGTTGAGGCTGGAGCCATGGCTGTGCGTCGTGTGAAGA
AGAGCGATCTGAAGATCATTGCTAAGGCTACCGGCGCCGCCTTTATTACC
TCGCTGACCAACATGGACGGTGAGGAGAGCTTCGATGCCTCAATGGTGGG
AGAGGCCGCAGAGGTGGCCCAGGAGCGCATCTGCGATGATGAACTTATCC
TCATCAAGGGCACTAAGGCACGTGCTGCCGCATCCATTATCTTGCGTGGT
CCCAATGACTTCTACTGTGATGAGATGGAGCGCTCCGTCCACGACGCTCT
GTGCGTGGTGAAGCGTGTGCTGGAGAGCAAGAAGGTTGTAGCCGGCGGCG
GCTGTGTGGAGGCTGCTTTGTCGATCTACCTGGAGAACTTTGCCACCTCG
CTGGCTTCCCGCGAACAGCTGGCCATTGCCGAATTCGCAAAGTCGCTGCT
GGTCATTCCCAAGACTCTGTCCGTGAACGCGGCCAAGGATGCCACTGATC
TAGTGGCCAAGCTCCGCTCCTACCACAACTCCAGCCAGACGAAGCCCGAG
CGTTCGGATCTTAAGTGGACCGGTCTGGATCTGATCGAGGGAGTGGTAAG
GGACAACAAGAAGGCTGGAGTTTTGGAGCCCGCCATGTCCAAGATCAAGT
CGCTGAAGTTCGCCACGGAGGCCGCCATTACCATTTTGCGTATTGACGAC
ATGATCAAGCTGAATCCGGAGGACAAGAGCGGCAAGAGTTACGCCGATGC
ATGCGCTGCCGGCGAGCTGGACGGTTAGACATTCTTCACCGCGAGCGAAG
CACATTTCTTCTATCTTGTTTAGGCATTTAATTTTAATCAAATCACTCAC
TTTCAATTGTCGCCCCATTGATTGTAACAACAATTTAATTGTGTTGCCCT
TCGCGATCTGTATTAACACCGCACATCCGCAATCCTTTCTCATCCATGCT
TCAATGTATAATAAACTGATCTTCAGAAAAAAAAAAAAAAAA

RE70560.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
T-cp1-RA 2080 T-cp1-RA 77..2054 1..1978 9890 100 Plus
T-cp1-RB 1981 T-cp1-RB 70..1963 85..1978 9470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18313486..18314376 1222..332 4440 99.9 Minus
chr3R 27901430 chr3R 18312669..18313423 1976..1222 3775 100 Minus
chr3R 27901430 chr3R 18314823..18314999 177..1 885 100 Minus
chr3R 27901430 chr3R 18314431..18314586 332..177 780 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22489922..22490812 1222..332 4455 100 Minus
3R 32079331 3R 22489103..22489859 1978..1222 3785 100 Minus
3R 32079331 3R 22491259..22491435 177..1 885 100 Minus
3R 32079331 3R 22490867..22491022 332..177 780 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22230753..22231643 1222..332 4455 100 Minus
3R 31820162 3R 22229934..22230690 1978..1222 3785 100 Minus
3R 31820162 3R 22232090..22232266 177..1 885 100 Minus
3R 31820162 3R 22231698..22231853 332..177 780 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:48:04 has no hits.

RE70560.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:48:47 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18312669..18313422 1223..1976 100 <- Minus
chr3R 18313486..18314376 332..1222 99 <- Minus
chr3R 18314432..18314585 178..331 100 <- Minus
chr3R 18314823..18314999 1..177 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:51 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RA 1..1674 105..1778 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:37:53 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RA 1..1674 105..1778 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:24 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RB 1..1674 105..1778 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:29:36 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RA 1..1674 105..1778 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:15:19 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RB 1..1674 105..1778 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:10:33 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RA 1..1972 5..1976 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:37:53 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RA 1..1972 5..1976 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:24 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RA 5..1980 1..1976 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:29:36 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RA 1..1972 5..1976 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:15:19 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RA 5..1980 1..1976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:48:47 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22489105..22489858 1223..1976 100 <- Minus
3R 22489922..22490812 332..1222 100 <- Minus
3R 22490868..22491021 178..331 100 <- Minus
3R 22491259..22491435 1..177 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:48:47 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22489105..22489858 1223..1976 100 <- Minus
3R 22489922..22490812 332..1222 100 <- Minus
3R 22490868..22491021 178..331 100 <- Minus
3R 22491259..22491435 1..177 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:48:47 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22489105..22489858 1223..1976 100 <- Minus
3R 22489922..22490812 332..1222 100 <- Minus
3R 22490868..22491021 178..331 100 <- Minus
3R 22491259..22491435 1..177 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:24 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18314827..18315580 1223..1976 100 <- Minus
arm_3R 18315644..18316534 332..1222 100 <- Minus
arm_3R 18316590..18316743 178..331 100 <- Minus
arm_3R 18316981..18317157 1..177 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:09 Download gff for RE70560.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22231699..22231852 178..331 100 <- Minus
3R 22232090..22232266 1..177 100   Minus
3R 22229936..22230689 1223..1976 100 <- Minus
3R 22230753..22231643 332..1222 100 <- Minus

RE70560.pep Sequence

Translation from 104 to 1777

> RE70560.pep
MSTLASPLSIAGTRQSGASVRTQNVMAALSISNIVKSSLGPVGLDKMLVD
DIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILA
AELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPVDELGRDS
LINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITDPRGQAAYSIKAINV
LKAHGKSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMK
MGVQVLINDPDKLEAIRARELDITKERINMILGTGVNVVLVSGGVDDLCM
KYFVEAGAMAVRRVKKSDLKIIAKATGAAFITSLTNMDGEESFDASMVGE
AAEVAQERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALC
VVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEFAKSLLV
IPKTLSVNAAKDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRD
NKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPEDKSGKSYADAC
AAGELDG*

RE70560.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16152-PA 557 GF16152-PA 1..557 1..557 2873 98.2 Plus
Dana\GF18192-PA 545 GF18192-PA 24..520 24..535 737 35.9 Plus
Dana\GF19192-PA 533 GF19192-PA 22..526 21..541 727 34.1 Plus
Dana\GF15661-PA 533 GF15661-PA 26..529 20..534 665 31.1 Plus
Dana\GF17067-PA 544 GF17067-PA 11..522 8..534 655 32.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12510-PA 557 GG12510-PA 1..557 1..557 2906 99.8 Plus
Dere\GG18286-PA 533 GG18286-PA 22..526 21..541 727 34.3 Plus
Dere\GG13138-PA 544 GG13138-PA 24..520 24..535 720 35.1 Plus
Dere\GG10247-PA 533 GG10247-PA 26..529 20..534 677 31.7 Plus
Dere\GG21785-PA 544 GG21785-PA 11..522 8..534 649 32.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18443-PA 557 GH18443-PA 1..557 1..557 2829 96.4 Plus
Dgri\GH12396-PA 533 GH12396-PA 22..526 21..541 737 34.4 Plus
Dgri\GH18252-PA 501 GH18252-PA 1..477 44..535 697 34.9 Plus
Dgri\GH18159-PA 544 GH18159-PA 11..522 8..534 651 32.3 Plus
Dgri\GH19719-PA 541 GH19719-PA 28..534 14..533 650 32.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CCT1-PA 557 CG5374-PA 1..557 1..557 2736 100 Plus
CCT1-PB 557 CG5374-PB 1..557 1..557 2736 100 Plus
CCT7-PA 544 CG8351-PA 11..520 12..535 748 35 Plus
CCT2-PA 535 CG7033-PA 24..525 21..538 734 34 Plus
CCT4-PA 533 CG5525-PA 26..529 20..534 713 31.9 Plus
CCT5-PA 542 CG8439-PA 28..538 14..537 674 32 Plus
CCT5-PB 512 CG8439-PB 4..508 20..537 673 32.2 Plus
CCT3-PD 544 CG8977-PD 17..522 14..534 655 31.7 Plus
CCT3-PC 544 CG8977-PC 17..522 14..534 655 31.7 Plus
CCT3-PB 544 CG8977-PB 17..522 14..534 655 31.7 Plus
CCT3-PA 544 CG8977-PA 17..522 14..534 655 31.7 Plus
CCT8-PA 546 CG8258-PA 31..526 23..534 551 28.8 Plus
CCT6-PA 533 CG8231-PA 23..525 24..535 543 25.9 Plus
Hsp60A-PB 573 CG12101-PB 11..549 2..532 194 21.3 Plus
Hsp60A-PA 573 CG12101-PA 11..549 2..532 194 21.3 Plus
Hsp60C-PB 576 CG7235-PB 33..553 17..532 164 20.6 Plus
Hsp60C-PC 576 CG7235-PC 33..553 17..532 164 20.6 Plus
Hsp60C-PA 576 CG7235-PA 33..553 17..532 164 20.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10788-PA 557 GI10788-PA 1..557 1..557 2826 96.6 Plus
Dmoj\GI11150-PA 557 GI11150-PA 1..557 1..557 2469 83.3 Plus
Dmoj\GI23651-PA 544 GI23651-PA 24..520 24..535 719 34.9 Plus
Dmoj\GI14726-PA 514 GI14726-PA 3..507 21..541 706 34.2 Plus
Dmoj\GI17110-PA 533 GI17110-PA 26..529 20..534 674 31.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23334-PA 557 GL23334-PA 1..557 1..557 2854 97.7 Plus
Dper\GL13090-PA 521 GL13090-PA 24..514 21..541 697 33.8 Plus
Dper\GL12486-PA 540 GL12486-PA 23..519 24..535 695 34.6 Plus
Dper\GL19739-PA 533 GL19739-PA 26..529 20..534 671 31.5 Plus
Dper\GL11023-PA 542 GL11023-PA 28..534 14..533 646 32.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18830-PA 557 GA18830-PA 1..557 1..557 2854 97.7 Plus
Dpse\GA20046-PA 533 GA20046-PA 22..526 21..541 726 34.5 Plus
Dpse\GA21011-PA 541 GA21011-PA 24..520 24..535 695 34.6 Plus
Dpse\GA18950-PA 533 GA18950-PA 26..529 20..534 673 31.5 Plus
Dpse\GA21448-PA 544 GA21448-PA 11..522 8..534 646 32.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23644-PA 557 GM23644-PA 1..557 1..557 2909 100 Plus
Dsec\GM13717-PA 533 GM13717-PA 22..526 21..541 724 34.5 Plus
Dsec\GM26064-PA 533 GM26064-PA 26..529 20..534 677 31.7 Plus
Dsec\GM23766-PA 501 GM23766-PA 1..477 44..535 673 34.5 Plus
Dsec\GM15181-PA 544 GM15181-PA 11..522 8..534 648 32.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\T-cp1-PA 557 GD18453-PA 1..557 1..557 2909 100 Plus
Dsim\GD19118-PA 544 GD19118-PA 11..522 8..534 648 32.3 Plus
Dsim\GD22106-PA 516 GD22106-PA 26..512 20..534 619 30.5 Plus
Dsim\GD18576-PA 436 GD18576-PA 24..421 24..474 586 32.8 Plus
Dsim\GD24772-PA 449 GD24772-PA 1..442 81..541 564 31.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14386-PA 557 GJ14386-PA 1..557 1..557 2826 96.4 Plus
Dvir\GJ19440-PA 533 GJ19440-PA 22..523 21..538 727 34.5 Plus
Dvir\GJ23495-PA 545 GJ23495-PA 24..520 24..535 720 34.9 Plus
Dvir\GJ16148-PA 533 GJ16148-PA 26..529 20..534 674 31.3 Plus
Dvir\GJ23334-PA 544 GJ23334-PA 11..522 8..534 651 32.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14439-PA 557 GK14439-PA 1..557 1..557 2884 98.6 Plus
Dwil\GK16400-PA 533 GK16400-PA 22..526 21..541 722 34 Plus
Dwil\GK11257-PA 544 GK11257-PA 24..520 24..535 720 34.9 Plus
Dwil\GK14617-PA 533 GK14617-PA 26..529 20..534 661 30.9 Plus
Dwil\GK13436-PA 544 GK13436-PA 11..522 8..534 649 32.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24032-PA 557 GE24032-PA 1..557 1..557 2901 99.5 Plus
Dyak\GE15818-PA 533 GE15818-PA 22..526 21..541 724 34.3 Plus
Dyak\GE25909-PA 515 GE25909-PA 1..491 30..535 712 35.2 Plus
Dyak\GE12130-PA 533 GE12130-PA 26..529 20..534 677 31.7 Plus
Dyak\GE24588-PA 544 GE24588-PA 11..522 8..534 649 32.3 Plus

RE70560.hyp Sequence

Translation from 104 to 1777

> RE70560.hyp
MSTLASPLSIAGTRQSGASVRTQNVMAALSISNIVKSSLGPVGLDKMLVD
DIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILA
AELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPVDELGRDS
LINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITDPRGQAAYSIKAINV
LKAHGKSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMK
MGVQVLINDPDKLEAIRARELDITKERINMILGTGVNVVLVSGGVDDLCM
KYFVEAGAMAVRRVKKSDLKIIAKATGAAFITSLTNMDGEESFDASMVGE
AAEVAQERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALC
VVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEFAKSLLV
IPKTLSVNAAKDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRD
NKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPEDKSGKSYADAC
AAGELDG*

RE70560.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
T-cp1-PA 557 CG5374-PA 1..557 1..557 2736 100 Plus
T-cp1-PB 557 CG5374-PB 1..557 1..557 2736 100 Plus
Tcp-1eta-PA 544 CG8351-PA 11..520 12..535 748 35 Plus
CG7033-PA 535 CG7033-PA 24..525 21..538 734 34 Plus
CG5525-PA 533 CG5525-PA 26..529 20..534 713 31.9 Plus