Clone RE70574 Report

Search the DGRC for RE70574

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:705
Well:74
Vector:pFlc-1
Associated Gene/TranscriptCG31855-RA
Protein status:RE70574.pep: gold
Sequenced Size:1053

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31855 2003-01-01 Sim4 clustering to Release 3
CG31855 2004-10-02 Blastp of sequenced clone
CG31855 2008-04-29 Release 5.5 accounting
CG31855 2008-08-15 Release 5.9 accounting
CG31855 2008-12-18 5.12 accounting

Clone Sequence Records

RE70574.complete Sequence

1053 bp (1053 high quality bases) assembled on 2006-06-05

GenBank Submission: BT015978

> RE70574.complete
AAGTTAAATTTTTGTGAGTTGCTACACAAAAAACGTAAAAAAGAAGACAG
TTCTCTCGAAATATTGATAGATCAACAAAGATTAAAGTGAGCAACCCAAA
AGCAGAATGTCAGTACGAGACTTTATCAAGGGTCTGCCCATACACGATTC
GAGCAATTTTACCCATTTGAGCAACGAACATGGAATTCGAACGTCGCAGA
AGCGTGCCTCCGTCTACCTGCCCACCGAGGATGAGCATTCAGAGCAGCTG
ATCGTGATGGACAAGCGATGTGTCCTGCTGCGCTACCTCACTCAGCAGTG
GGACAAAAAGACGCTTCAGCGGAAGAGGGAGCACGGCGGCGATTCGGGAA
ATGGCAACGGCAACAGCTCCACGCCCAACGGCAACAGCACCAACAGCAAA
AAGCGCCCGCGCTTGGACCCCAACGAGCTGAACTGAGCTGGGCGGCAGGA
CCTTAAGCCAAGCACCCGATGGACATCCCCACGCAGCACTACTATCCCGA
GCGAACACGCAGCCGCCACCATTCATTTACACTCATATACATATATATTA
AATAAAATATACTAAGTACAAAGGAGTTGCAGTCGAACGGTCCTTTCAAA
GTTTTGTATCACGCTGATCATTGGTCGAAAGCCCCAGTATTTCTTTAGAT
TTCAGTTGTACCCAAATTAACACAGCTAAATAATGTTTTTGTGACCAACA
TATGCATACCTCCTTTTGCAAGAAAATACCATCATTCGTATAAAATGCCG
AGTACAAAATTTTGTAAGCTTTGTTACTGCTAGTTCATGAATCACGGTAT
TTTTTTTTCCATTCTTTGGACTTACCTTAGGAAAATATACATGTACTTCT
CGCAAAGTTTGTAACCTAAAATGTAATGCGTTTATAATCTGGGAATTGAT
CTGCATAACCAATTGTATACACTATTATTGTAAATTGGCAATGAATTATT
TTGGCAGAAGGAAGATCGACTGAATTCCAGTACAACACATTTATAATAGC
ACATAATGTGAGTTCCAATAGATTTACTTTTAAAGGCAAAAAAAAAAAAA
AAA

RE70574.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-RA 1136 CG31855-RA 88..1127 1..1040 5155 99.7 Plus
CG31855.a 1075 CG31855.a 41..1075 1..1040 5055 99.2 Plus
CG31855-RB 1142 CG31855-RB 192..1142 90..1040 4725 99.7 Plus
CG31855-RB 1142 CG31855-RB 41..131 1..91 440 98.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13368057..13369003 90..1035 4640 99.6 Plus
chr2L 23010047 chr2L 13367916..13367996 11..91 375 97.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13369384..13370334 90..1040 4725 99.8 Plus
2L 23513712 2L 13369233..13369323 1..91 440 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13369384..13370334 90..1040 4725 99.7 Plus
2L 23513712 2L 13369233..13369323 1..91 440 98.9 Plus
Blast to na_te.dros performed 2019-03-16 15:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 809..859 576..525 113 71.2 Minus

RE70574.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:02:10 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13367908..13367996 1..91 96 -> Plus
chr2L 13368059..13369005 92..1037 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:53 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RB 1..330 107..436 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:23:22 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RB 1..330 107..436 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:06 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 1..330 107..436 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:42:04 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RB 1..330 107..436 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:39:36 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 1..330 107..436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:51:37 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 41..1077 1..1037 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:23:22 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 41..1077 1..1037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:06 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 30..1064 1..1035 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:42:04 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 41..1077 1..1037 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:36 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 30..1064 1..1035 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:02:10 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13369233..13369323 1..91 98 -> Plus
2L 13369386..13370331 92..1037 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:02:10 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13369233..13369323 1..91 98 -> Plus
2L 13369386..13370331 92..1037 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:02:10 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13369233..13369323 1..91 98 -> Plus
2L 13369386..13370331 92..1037 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:06 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13369233..13369323 1..91 98 -> Plus
arm_2L 13369386..13370331 92..1037 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:51:20 Download gff for RE70574.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13369233..13369323 1..91 98 -> Plus
2L 13369386..13370331 92..1037 99   Plus

RE70574.pep Sequence

Translation from 106 to 435

> RE70574.pep
MSVRDFIKGLPIHDSSNFTHLSNEHGIRTSQKRASVYLPTEDEHSEQLIV
MDKRCVLLRYLTQQWDKKTLQRKREHGGDSGNGNGNSSTPNGNSTNSKKR
PRLDPNELN*

RE70574.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23128-PA 110 GF23128-PA 1..110 1..109 414 82.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23844-PA 109 GG23844-PA 1..109 1..109 563 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13461-PA 107 GH13461-PA 1..107 1..109 454 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-PB 109 CG31855-PB 1..109 1..109 580 100 Plus
CG31855-PA 109 CG31855-PA 1..109 1..109 580 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17215-PA 107 GI17215-PA 1..107 1..109 381 77.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26047-PA 106 GL26047-PA 1..106 1..109 500 88.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16526-PA 106 GA16526-PA 1..106 1..109 500 88.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10443-PA 109 GM10443-PA 1..109 1..109 569 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23893-PA 109 GD23893-PA 1..109 1..109 569 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17972-PA 107 GJ17972-PA 1..107 1..109 457 83.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15284-PA 108 GK15284-PA 1..107 1..109 432 83.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18649-PA 109 GE18649-PA 1..109 1..109 574 99.1 Plus

RE70574.hyp Sequence

Translation from 106 to 435

> RE70574.hyp
MSVRDFIKGLPIHDSSNFTHLSNEHGIRTSQKRASVYLPTEDEHSEQLIV
MDKRCVLLRYLTQQWDKKTLQRKREHGGDSGNGNGNSSTPNGNSTNSKKR
PRLDPNELN*

RE70574.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-PB 109 CG31855-PB 1..109 1..109 580 100 Plus
CG31855-PA 109 CG31855-PA 1..109 1..109 580 100 Plus