Clone RE70632 Report

Search the DGRC for RE70632

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:706
Well:32
Vector:pFlc-1
Associated Gene/TranscriptmRNA-cap-RA
Protein status:RE70632.pep: gold
Sequenced Size:2255

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1810 2002-01-01 Sim4 clustering to Release 2
CG1810 2003-07-07 Blastp of sequenced clone
mRNA-capping-enzyme 2008-04-29 Release 5.5 accounting
mRNA-capping-enzyme 2008-08-15 Release 5.9 accounting
mRNA-capping-enzyme 2008-12-18 5.12 accounting

Clone Sequence Records

RE70632.complete Sequence

2255 bp (2255 high quality bases) assembled on 2003-07-07

GenBank Submission: BT009965

> RE70632.complete
ACATATATATTCCACATCTCTAGACAAATCCTACACAGAATTCCCAGGCC
CGCGAGTTCTCGCTGCATCTGCATCCACCACAATCTGCACCAGCAATAAA
CCACCTAACACAAACGCAACGGCGTCGTCCCATCGCTGCGCCCGCCGTTT
CCATCGTCGTCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGG
AGGAGGAGGAGCAGGAGAGGCGGAGCCACTGTGGCACTATGGCCCTAACT
AATCGGGATCGGGAACGGGGCTCTGGTCCATTGCCCAATCGCTGGCTATA
CTGTCCGCGCAAGAGCGATACCATCATTGCGGAACGCTTCCTGGCCTTTA
AGACCCCGCTGAGCAATAACTTTCACGACAAGATGCCCATCGAGTGCACC
TTTCAACCCGAGATGCTCTTCGAATACTGCAAAACGCTAAAGGTGAAACT
GGGCCTCTGGGTTGACCTGACCAATACGAAACGATTCTACGATCGATCCG
CAGTGGAGGAGCTCGGCGCGAAATATATTAAGCTGCAGTGCCGTGGACAT
GGCGAGACGCCATCGCCGGAGCAGACGCACAGTTTCATCGAGATCGTGGA
CAACTTTATTAACGAACGTCCATTTGACGTTATAGCCGTGCACTGCACGC
ACGGTTTCAATCGCACTGGCTTCCTGATTGTCTGCTATTTGGTCGAGCGA
CTCGATTGCTCCGTTTCGGCAGCGCTCGCTATCTTTGCCAGCGCCCGGCC
GCCGGGCATCTACAAGCAGGATTACATCAACGAGCTGTACAAACGCTACG
AGGACACGAATGCCGCTCCAGCGGCACCAGAACAGCCCAATTGGTGCCTG
GACTATGATGATGGCAACGGCGATGGTTTTGTGCAGGACAACTCCTCATC
CACGTCACAGCAGGCCGGCGAGCAGGATGACGACGCCGAGGAGGTGGAGG
GAGAGGATGCGGGCGGCGACTGTGACGCCTCCACGTCGGACGGTCAGCCG
CGTAAGAAGCGACGGCGCGAAATGATCATCAAGAATGCCACCTTTATGGC
GGGAGTGCCGGGCGTGCGACAGGTGAGCGATCAGCCGCGACTGGGCGATC
TGCAGCGTAAGGTGCAGGACTGGTGCGACTGGAAGAAGAACGGCTTCCCT
GGCGCACAGCCCGTCTCCATGGACAGGGAGAACATAAAGCGGCTAAGCGA
GATACCGTATCGTGTGTCGTGGAAGGCGGACGGTACACGTTATATGATGC
TCATCGATGGAAGGGACGAGGTATATTTCTTCGATCGCAATCACTCCTGT
TTCCAGGTGGAGAATGTGACATTTGTGGAGAGCAGGAACCTAAACGAGCA
TCTCGACGGCACTCTCGTCGACGGGGAGATGGTGCTGGACAAGATCGGCG
AGACCGTAACGCCGCGCTACCTCATCTACGACATTGTGCGATTATCGAAT
CGCGATGTGCGGGACGAGCCATTCTATCCAAATCGACTGGACTACATTAA
GACGGAAGTTATAGGTCCCCGAATCCTGGGCATGAAGCATGGCATCATCA
ATCAGCGGCTGCAGGCGTTCAGTGTGCGCGGCAAGGACTTCTGGGACATT
TGGATGTCTGCCCGGCTGCTGGGTGAGAAATTCTCGCGGACACTGGCACA
CGAACCGGATGGCCTCATCTTCCAGCCATCAAAGCAGCCCTACACGGCTG
GCACATGCTCCGATGTCTTCAAATGGAAGCCACATGAGCTCAACTCGGTG
GACTTTCGGCTGAAGATCATAACAGAGCGCGGCGAGGGCTTGCTGACGAA
AAAGGTGGGCTTCCTCTATGTCGGCGGACACGATGCACCCTATGGACGGA
TGCAAAGGTTAACGAAGGAGACCAGAGAATTGGACAACAGAATCGTTGAG
TGCACCATGAATCAGTTTGGCAACTGGGACTTTATGCGCGAGCGAACGGA
CAAAAAGAATCCCAACAGTTATAATACAGCCCGCTCCGTTGTGGACAGCA
TAAAGCATCCAGTCACCAAGGAGTACCTACTAAACTTTATCGCAAGCTCT
GGCTATCGGAATGATCATGTCATGATGCCGCCGCCGATCAATTCCCATAA
CCAAAACCACAACCATAACCACTTTTATCCCCATGGTCATGGCCAACACC
AGCGTCGTCCCTGCGTGAACCCGACATTAGGAAATTAATCAGAGCGTAAT
AAAAAAAGAAAGAATAAAATTAATCGTGAGTTATGTACCAAAAAAAAAAA
AAAAA

RE70632.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
mRNA-capping-enzyme-RA 2466 mRNA-capping-enzyme-RA 71..2315 1..2245 11210 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14131926..14132861 1376..441 4650 99.8 Minus
chrX 22417052 chrX 14132919..14133365 447..1 2220 99.8 Minus
chrX 22417052 chrX 14131398..14131673 1788..1513 1365 99.6 Minus
chrX 22417052 chrX 14130813..14131066 2239..1986 1270 100 Minus
chrX 22417052 chrX 14131134..14131331 1985..1788 990 100 Minus
chrX 22417052 chrX 14131724..14131865 1516..1375 710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14241380..14242315 1376..441 4680 100 Minus
X 23542271 X 14242373..14242819 447..1 2235 100 Minus
X 23542271 X 14240852..14241127 1788..1513 1380 100 Minus
X 23542271 X 14240261..14240520 2245..1986 1285 99.6 Minus
X 23542271 X 14240588..14240785 1985..1788 990 100 Minus
X 23542271 X 14241178..14241319 1516..1375 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14249478..14250413 1376..441 4680 100 Minus
X 23527363 X 14250471..14250917 447..1 2235 100 Minus
X 23527363 X 14248950..14249225 1788..1513 1380 100 Minus
X 23527363 X 14248359..14248618 2245..1986 1285 99.6 Minus
X 23527363 X 14248686..14248883 1985..1788 990 100 Minus
X 23527363 X 14249276..14249417 1516..1375 710 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:39:40 has no hits.

RE70632.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:40:51 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14130813..14131066 1986..2239 100 <- Minus
chrX 14131134..14131330 1789..1985 100 <- Minus
chrX 14131398..14131671 1515..1788 99 <- Minus
chrX 14131726..14131864 1376..1514 100 <- Minus
chrX 14131927..14132859 443..1375 99 <- Minus
chrX 14132924..14133365 1..442 91   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:34:56 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
mRNA-capping-enzyme-RA 1..1950 239..2188 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:31:11 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
mRNA-capping-enzyme-RA 1..1950 239..2188 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:06:49 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
mRNA-cap-RA 1..1950 239..2188 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:04:48 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
mRNA-capping-enzyme-RA 1..1950 239..2188 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:58 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
mRNA-cap-RA 1..1950 239..2188 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:32:19 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
mRNA-capping-enzyme-RA 1..2239 1..2239 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:31:11 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
mRNA-capping-enzyme-RA 1..2239 1..2239 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:49 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
mRNA-cap-RA 4..2242 1..2239 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:04:48 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
mRNA-capping-enzyme-RA 1..2239 1..2239 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:58 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
mRNA-cap-RA 4..2242 1..2239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:40:51 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
X 14240588..14240784 1789..1985 100 <- Minus
X 14240267..14240520 1986..2239 100 <- Minus
X 14240852..14241125 1515..1788 100 <- Minus
X 14241180..14241318 1376..1514 100 <- Minus
X 14241381..14242313 443..1375 100 <- Minus
X 14242378..14242819 1..442 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:40:51 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
X 14240588..14240784 1789..1985 100 <- Minus
X 14240267..14240520 1986..2239 100 <- Minus
X 14240852..14241125 1515..1788 100 <- Minus
X 14241180..14241318 1376..1514 100 <- Minus
X 14241381..14242313 443..1375 100 <- Minus
X 14242378..14242819 1..442 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:40:51 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
X 14240588..14240784 1789..1985 100 <- Minus
X 14240267..14240520 1986..2239 100 <- Minus
X 14240852..14241125 1515..1788 100 <- Minus
X 14241180..14241318 1376..1514 100 <- Minus
X 14241381..14242313 443..1375 100 <- Minus
X 14242378..14242819 1..442 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:49 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14134300..14134553 1986..2239 100 <- Minus
arm_X 14134621..14134817 1789..1985 100 <- Minus
arm_X 14134885..14135158 1515..1788 100 <- Minus
arm_X 14135213..14135351 1376..1514 100 <- Minus
arm_X 14135414..14136346 443..1375 100 <- Minus
arm_X 14136411..14136852 1..442 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:42:54 Download gff for RE70632.complete
Subject Subject Range Query Range Percent Splice Strand
X 14248365..14248618 1986..2239 100 <- Minus
X 14248686..14248882 1789..1985 100 <- Minus
X 14248950..14249223 1515..1788 100 <- Minus
X 14249278..14249416 1376..1514 100 <- Minus
X 14249479..14250411 443..1375 100 <- Minus
X 14250476..14250917 1..442 100   Minus

RE70632.hyp Sequence

Translation from 238 to 2187

> RE70632.hyp
MALTNRDRERGSGPLPNRWLYCPRKSDTIIAERFLAFKTPLSNNFHDKMP
IECTFQPEMLFEYCKTLKVKLGLWVDLTNTKRFYDRSAVEELGAKYIKLQ
CRGHGETPSPEQTHSFIEIVDNFINERPFDVIAVHCTHGFNRTGFLIVCY
LVERLDCSVSAALAIFASARPPGIYKQDYINELYKRYEDTNAAPAAPEQP
NWCLDYDDGNGDGFVQDNSSSTSQQAGEQDDDAEEVEGEDAGGDCDASTS
DGQPRKKRRREMIIKNATFMAGVPGVRQVSDQPRLGDLQRKVQDWCDWKK
NGFPGAQPVSMDRENIKRLSEIPYRVSWKADGTRYMMLIDGRDEVYFFDR
NHSCFQVENVTFVESRNLNEHLDGTLVDGEMVLDKIGETVTPRYLIYDIV
RLSNRDVRDEPFYPNRLDYIKTEVIGPRILGMKHGIINQRLQAFSVRGKD
FWDIWMSARLLGEKFSRTLAHEPDGLIFQPSKQPYTAGTCSDVFKWKPHE
LNSVDFRLKIITERGEGLLTKKVGFLYVGGHDAPYGRMQRLTKETRELDN
RIVECTMNQFGNWDFMRERTDKKNPNSYNTARSVVDSIKHPVTKEYLLNF
IASSGYRNDHVMMPPPINSHNQNHNHNHFYPHGHGQHQRRPCVNPTLGN*

RE70632.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
mRNA-cap-PA 649 CG1810-PA 1..649 1..649 3527 100 Plus
CG13197-PB 343 CG13197-PB 5..170 15..183 242 34.9 Plus
CG13197-PA 343 CG13197-PA 5..170 15..183 242 34.9 Plus

RE70632.pep Sequence

Translation from 238 to 2187

> RE70632.pep
MALTNRDRERGSGPLPNRWLYCPRKSDTIIAERFLAFKTPLSNNFHDKMP
IECTFQPEMLFEYCKTLKVKLGLWVDLTNTKRFYDRSAVEELGAKYIKLQ
CRGHGETPSPEQTHSFIEIVDNFINERPFDVIAVHCTHGFNRTGFLIVCY
LVERLDCSVSAALAIFASARPPGIYKQDYINELYKRYEDTNAAPAAPEQP
NWCLDYDDGNGDGFVQDNSSSTSQQAGEQDDDAEEVEGEDAGGDCDASTS
DGQPRKKRRREMIIKNATFMAGVPGVRQVSDQPRLGDLQRKVQDWCDWKK
NGFPGAQPVSMDRENIKRLSEIPYRVSWKADGTRYMMLIDGRDEVYFFDR
NHSCFQVENVTFVESRNLNEHLDGTLVDGEMVLDKIGETVTPRYLIYDIV
RLSNRDVRDEPFYPNRLDYIKTEVIGPRILGMKHGIINQRLQAFSVRGKD
FWDIWMSARLLGEKFSRTLAHEPDGLIFQPSKQPYTAGTCSDVFKWKPHE
LNSVDFRLKIITERGEGLLTKKVGFLYVGGHDAPYGRMQRLTKETRELDN
RIVECTMNQFGNWDFMRERTDKKNPNSYNTARSVVDSIKHPVTKEYLLNF
IASSGYRNDHVMMPPPINSHNQNHNHNHFYPHGHGQHQRRPCVNPTLGN*

RE70632.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15987-PA 672 GF15987-PA 18..637 12..618 2865 84.4 Plus
Dana\GF11454-PA 369 GF11454-PA 3..172 14..185 263 36 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19463-PA 652 GG19463-PA 1..621 1..613 2939 88.6 Plus
Dere\GG20215-PA 302 GG20215-PA 2..187 12..202 261 33.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11798-PA 642 GH11798-PA 1..637 1..616 2627 74.7 Plus
Dgri\GH22885-PA 378 GH22885-PA 2..170 11..183 283 38.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
mRNA-cap-PA 649 CG1810-PA 1..649 1..649 3527 100 Plus
CG13197-PB 343 CG13197-PB 5..170 15..183 242 34.9 Plus
CG13197-PA 343 CG13197-PA 5..170 15..183 242 34.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15976-PA 638 GI15976-PA 1..633 3..616 2644 75.5 Plus
Dmoj\GI21271-PA 388 GI21271-PA 5..171 15..183 273 36 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14931-PA 599 GL14931-PA 1..599 1..611 2414 73.2 Plus
Dper\GL10081-PA 385 GL10081-PA 5..172 15..185 251 33.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14791-PA 655 GA14791-PA 1..653 1..638 2658 75.6 Plus
Dpse\GA12112-PA 385 GA12112-PA 5..172 15..185 254 34.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17561-PA 651 GM17561-PA 1..651 1..649 3383 95.2 Plus
Dsec\GM21302-PA 351 GM21302-PA 5..170 15..183 253 34.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15855-PA 651 GD15855-PA 1..651 1..649 3379 94.9 Plus
Dsim\GD10810-PA 402 GD10810-PA 5..170 15..183 258 34.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19096-PA 637 GJ19096-PA 1..632 1..616 2657 77.1 Plus
Dvir\GJ20873-PA 401 GJ20873-PA 5..171 15..183 265 35.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24975-PA 639 GK24975-PA 1..639 1..626 2652 76.8 Plus
Dwil\GK17880-PA 397 GK17880-PA 5..255 15..258 256 31 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16118-PA 750 GE16118-PA 97..713 1..613 3006 88.7 Plus
Dyak\GE12375-PA 329 GE12375-PA 2..170 12..183 262 35.1 Plus