Clone RE70650 Report

Search the DGRC for RE70650

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:706
Well:50
Vector:pFlc-1
Associated Gene/TranscriptRabX6-RA
Protein status:RE70650.pep: gold
Preliminary Size:728
Sequenced Size:1300

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12015 2001-12-17 Blastp of sequenced clone
CG12015 2002-01-01 Sim4 clustering to Release 2
CG12015 2003-01-01 Sim4 clustering to Release 3
RabX6 2008-04-29 Release 5.5 accounting
RabX6 2008-08-15 Release 5.9 accounting
RabX6 2008-12-18 5.12 accounting

Clone Sequence Records

RE70650.complete Sequence

1300 bp (1300 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071647

> RE70650.complete
ACAAACAGCTGTTGTCGCACTGTTGTTGTCGCCTTTGTGTCTGCAGGTGC
AAAATAATATATTAATTGGATTAACTTGGGATTAATCGAGCGATCACAGC
CATGGCCACGATGCGCATACCCAAACAAAAGGTGATCCTGTGCGGCGACT
ACGGAGTGGGCAAGAGCTCCCTGTTCCGGCGCTTCGCCACCAACACCTTC
ATCACGGATACGGACAGGAAATCCACGTTGGGACTGGACCACATCGATAG
GGAATACAGTGTGAATGAAAAGCAGATCAAGCTCCAACTCTGGGACACCG
GTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCGTACTACAAGTTCGCC
GAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGCCGCTTCGTTCCACTC
GCTGTCGCAGCACTTGCTGGACATTGTGACCTATGCAGAGAATGCCAAGA
TCTTCATCTGTGGCAATAAGAGCGATCTGGATGGCAGGGAGCCGGAGGTC
AGCGATGAGGAAGTGGAGGCCTTCTGCGAGCAGTGCCACTCACTGATCAG
TGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCGGTGTGGAGGAGATGT
TCCGTGACATCTCTAGGCAACTGGTCCACGCCAATCGCTCCAAAATGGAA
CTGCAGGCACTGGAGCACAAGAGCTTCCAGGTGGACACTGCGAGCAGCGG
CGCGGCGACCAACGAGGAGGACGCCTCCTCCTGCGGCTGCTAGCAGTTGG
GGAACATTGAGTTCGGCTAGGAACCCTTATTCCCGCCAGGCTCAATGCTC
ACGCAGAGATGCATTTTTACTGTTTCCTTTATTTATTGATAGCTTTCGGC
TATGTTATGATTTTTAGATACGTACATGTTCAATTCGAATTTTTACGAAA
AATACGTCCCGAACGCGAACACGAGTCATAGAGTAGGATTAGTTTCTATT
AACCAGGCGCCAAACATTAACCACTTAAACTTTGTACACGTAAGCTAGGA
TGGCGGATACGCGAGTGATAGGTTAGAAATCTGCGGTAAGAATTAAAAAG
TAATAGGAATTCCATCGATTAACAAGAAGGTCAATTTAATCTTAAAGGTA
AAAGGACAACAAAATATATAGACATCGATTGACCGCAGATAACTACTCTA
AGCTTCGACTCTTATTGCACGTAATACTCCATCCTATCTTATATAGATTA
GTGCGTAATCTGCAGCTTTCTTCCACAGAATATCTCGTAAAAATAAAATA
TACTAAACAATAAATAATCAACTCACGAAATTGGAAAAAAAAAAAAAAAA

RE70650.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-RA 1377 RabX6-RA 92..1377 1..1286 6430 100 Plus
RabX6.a 1256 RabX6.a 67..1256 97..1286 5950 100 Plus
Vti1-RA 1475 Vti1-RA 1003..1475 1286..814 2365 100 Minus
RabX6.a 1256 RabX6.a 24..69 1..46 230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 690760..691764 280..1284 5025 100 Plus
chr3L 24539361 chr3L 690332..690612 1..281 1330 98.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 690947..691953 280..1286 5035 100 Plus
3L 28110227 3L 690519..690799 1..281 1405 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 690947..691953 280..1286 5035 100 Plus
3L 28103327 3L 690519..690799 1..281 1405 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:11:15 has no hits.

RE70650.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:16 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 690332..690612 1..281 98 -> Plus
chr3L 690762..691764 282..1284 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:53 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 1..642 102..743 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:05:52 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RB 1..669 102..770 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:36 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 1..642 102..743 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:38 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RB 1..669 102..770 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:22:37 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 1..1284 1..1284 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:53 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 1..1284 1..1284 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:52 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 3..1286 1..1284 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:37 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 1..1284 1..1284 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:38 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 3..1286 1..1284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:16 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 690519..690799 1..281 100 -> Plus
3L 690949..691951 282..1284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:16 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 690519..690799 1..281 100 -> Plus
3L 690949..691951 282..1284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:16 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 690519..690799 1..281 100 -> Plus
3L 690949..691951 282..1284 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:52 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 690519..690799 1..281 100 -> Plus
arm_3L 690949..691951 282..1284 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:37 Download gff for RE70650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 690519..690799 1..281 100 -> Plus
3L 690949..691951 282..1284 100   Plus

RE70650.hyp Sequence

Translation from 101 to 742

> RE70650.hyp
MATMRIPKQKVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDR
EYSVNEKQIKLQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHS
LSQHLLDIVTYAENAKIFICGNKSDLDGREPEVSDEEVEAFCEQCHSLIS
ATYKTSCRSGAGVEEMFRDISRQLVHANRSKMELQALEHKSFQVDTASSG
AATNEEDASSCGC*

RE70650.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-PA 213 CG12015-PA 1..213 1..213 1096 100 Plus
RabX6-PB 222 CG12015-PB 1..213 1..213 1096 100 Plus
Rab14-PD 215 CG4212-PD 13..215 10..211 271 34 Plus
Rab14-PA 215 CG4212-PA 13..215 10..211 271 34 Plus
Rab14-PB 239 CG4212-PB 37..239 10..211 271 34 Plus

RE70650.pep Sequence

Translation from 101 to 742

> RE70650.pep
MATMRIPKQKVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDR
EYSVNEKQIKLQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHS
LSQHLLDIVTYAENAKIFICGNKSDLDGREPEVSDEEVEAFCEQCHSLIS
ATYKTSCRSGAGVEEMFRDISRQLVHANRSKMELQALEHKSFQVDTASSG
AATNEEDASSCGC*

RE70650.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10394-PA 212 GF10394-PA 1..212 1..213 1092 96.2 Plus
Dana\GF11067-PA 213 GF11067-PA 8..167 10..174 268 41 Plus
Dana\GF14883-PA 239 GF14883-PA 37..239 10..211 266 34 Plus
Dana\GF14944-PA 225 GF14944-PA 9..174 10..181 256 36.8 Plus
Dana\GF17263-PA 205 GF17263-PA 13..172 10..174 252 39.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14733-PA 213 GG14733-PA 1..213 1..213 1135 99.1 Plus
Dere\GG23219-PA 213 GG23219-PA 8..167 10..174 268 41 Plus
Dere\GG23555-PA 223 GG23555-PA 9..174 10..181 256 36.8 Plus
Dere\GG14295-PA 219 GG14295-PA 23..184 10..174 255 34.9 Plus
Dere\GG14761-PA 205 GG14761-PA 13..172 10..174 252 39.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15417-PA 211 GH15417-PA 1..211 1..213 988 86.4 Plus
Dgri\GH21751-PA 213 GH21751-PA 8..209 10..204 269 36.5 Plus
Dgri\GH11344-PA 243 GH11344-PA 41..243 10..211 261 33.5 Plus
Dgri\GH18937-PA 205 GH18937-PA 13..172 10..174 258 39.2 Plus
Dgri\GH13416-PA 226 GH13416-PA 9..174 10..181 258 36.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-PA 213 CG12015-PA 1..213 1..213 1096 100 Plus
RabX6-PB 222 CG12015-PB 1..213 1..213 1096 100 Plus
Rab14-PD 215 CG4212-PD 13..215 10..211 271 34 Plus
Rab14-PA 215 CG4212-PA 13..215 10..211 271 34 Plus
Rab14-PB 239 CG4212-PB 37..239 10..211 271 34 Plus
Rab2-PB 213 CG3269-PB 8..167 10..174 265 41 Plus
Rab2-PA 213 CG3269-PA 8..167 10..174 265 41 Plus
Rab19-PB 219 CG7062-PP3-RB 23..184 10..174 261 34.9 Plus
Rab19-PA 219 CG7062-PA 23..184 10..174 261 34.9 Plus
Rab30-PD 223 CG9100-PD 9..195 10..212 251 34.1 Plus
Rab30-PC 223 CG9100-PC 9..195 10..212 251 34.1 Plus
Rab30-PB 223 CG9100-PB 9..195 10..212 251 34.1 Plus
Rab30-PA 223 CG9100-PA 9..195 10..212 251 34.1 Plus
Rab1-PA 205 CG3320-PA 13..172 10..174 250 39.2 Plus
Rab35-PB 201 CG9575-PB 10..169 10..175 247 34.9 Plus
Rab35-PD 201 CG9575-PD 10..169 10..175 247 34.9 Plus
Rab35-PA 201 CG9575-PA 10..169 10..175 247 34.9 Plus
Rab11-PA 214 CG5771-PA 13..172 10..174 245 36.7 Plus
Rab11-PB 214 CG5771-PB 13..172 10..174 245 36.7 Plus
Rab39-PB 218 CG12156-PB 11..181 10..180 242 39.2 Plus
Rab39-PA 218 CG12156-PA 11..181 10..180 242 39.2 Plus
Rab26-PE 410 CG34410-PE 214..375 10..174 241 36.1 Plus
Rab26-PD 410 CG34410-PD 214..375 10..174 241 36.1 Plus
Rab26-PC 410 CG34410-PC 214..375 10..174 241 36.1 Plus
Rab6-PB 208 CG6601-PB 12..173 8..174 234 32.1 Plus
Rab6-PA 208 CG6601-PA 12..173 8..174 234 32.1 Plus
Rab4-PA 213 CG4921-PA 10..193 10..202 234 34 Plus
Rab4-PB 213 CG4921-PB 10..193 10..202 234 34 Plus
Rab18-PA 197 CG3129-PA 7..197 10..213 229 33.5 Plus
Rab26-PG 388 CG34410-PG 192..353 10..174 224 34.3 Plus
Rab26-PB 388 CG34410-PB 192..353 10..174 224 34.3 Plus
Rab10-PA 204 CG17060-PA 11..171 10..175 223 34.5 Plus
Rab35-PC 190 CG9575-PC 8..158 19..175 222 34.4 Plus
Rab7-PC 207 CG5915-PC 10..207 10..213 218 29 Plus
Rab7-PB 207 CG5915-PB 10..207 10..213 218 29 Plus
Rab7-PA 207 CG5915-PA 10..207 10..213 218 29 Plus
Rab9-PA 256 CG9994-PA 1..171 1..167 216 28 Plus
Rab9Fb-PA 214 CG32670-PA 9..165 10..171 215 33.5 Plus
Rab3-PB 220 CG7576-PB 23..175 10..167 215 32.1 Plus
Rab3-PA 220 CG7576-PA 23..175 10..167 215 32.1 Plus
Rab8-PC 207 CG8287-PC 10..178 10..183 213 31.4 Plus
Rab8-PA 207 CG8287-PA 10..178 10..183 213 31.4 Plus
Rab23-PA 268 CG2108-PA 39..191 10..168 207 29.6 Plus
RabX1-PA 261 CG3870-PA 1..199 4..210 205 32.5 Plus
RabX4-PA 213 CG31118-PA 1..170 1..174 203 29.7 Plus
Rab27-PC 230 CG14791-PC 13..168 10..165 198 34 Plus
Rab27-PB 236 CG14791-PB 18..174 9..165 196 33.1 Plus
Rab5-PI 219 CG3664-PI 31..190 10..174 195 30.7 Plus
Rab5-PH 219 CG3664-PH 31..190 10..174 195 30.7 Plus
Rab5-PG 219 CG3664-PG 31..190 10..174 195 30.7 Plus
Rab5-PE 219 CG3664-PE 31..190 10..174 195 30.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13021-PA 211 GI13021-PA 1..211 1..213 994 87.3 Plus
Dmoj\GI19298-PA 213 GI19298-PA 8..167 10..174 268 41 Plus
Dmoj\GI12880-PA 243 GI12880-PA 41..243 10..211 267 34 Plus
Dmoj\GI10837-PA 205 GI10837-PA 13..172 10..174 262 39.8 Plus
Dmoj\GI16780-PA 219 GI16780-PA 23..203 10..194 260 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20707-PA 211 GL20707-PA 1..211 1..213 1022 89.7 Plus
Dper\GL11116-PA 213 GL11116-PA 8..167 10..174 268 41 Plus
Dper\GL21269-PA 239 GL21269-PA 37..239 10..211 267 34 Plus
Dper\GL25775-PA 232 GL25775-PA 9..174 10..181 257 36.8 Plus
Dper\GL22545-PA 219 GL22545-PA 23..184 10..174 256 35.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11338-PA 211 GA11338-PA 1..211 1..213 1022 89.7 Plus
Dpse\GA17076-PA 213 GA17076-PA 8..167 10..174 268 41 Plus
Dpse\GA18036-PA 239 GA18036-PA 37..239 10..211 267 34 Plus
Dpse\GA21542-PA 230 GA21542-PA 9..174 10..181 257 36.8 Plus
Dpse\GA20071-PA 219 GA20071-PA 23..184 10..174 256 35.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14352-PA 213 GM14352-PA 1..213 1..213 1122 97.7 Plus
Dsec\GM20894-PA 200 GM20894-PA 8..167 10..174 267 41 Plus
Dsec\GM15560-PA 239 GM15560-PA 37..239 10..211 267 34 Plus
Dsec\GM13645-PA 223 GM13645-PA 9..174 10..181 256 36.8 Plus
Dsec\GM25038-PA 219 GM25038-PA 23..184 10..174 255 34.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13569-PA 213 GD13569-PA 1..213 1..213 1126 98.1 Plus
Dsim\GD10420-PA 213 GD10420-PA 8..167 10..174 268 41 Plus
Dsim\GD23961-PA 239 GD23961-PA 37..239 10..211 263 34 Plus
Dsim\GD14074-PA 219 GD14074-PA 23..184 10..174 255 34.9 Plus
Dsim\GD19996-PA 205 GD19996-PA 13..172 10..174 252 39.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12112-PA 211 GJ12112-PA 1..211 1..213 998 87.3 Plus
Dvir\GJ22175-PA 213 GJ22175-PA 8..209 10..204 269 36.5 Plus
Dvir\GJ18183-PA 236 GJ18183-PA 34..236 10..211 268 34 Plus
Dvir\GJ14443-PA 205 GJ14443-PA 13..172 10..174 262 39.8 Plus
Dvir\GJ12523-PA 220 GJ12523-PA 23..204 10..194 255 31.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17516-PA 213 GK17516-PA 1..213 1..213 998 86.9 Plus
Dwil\GK23088-PA 213 GK23088-PA 8..167 10..174 268 41 Plus
Dwil\GK17190-PA 219 GK17190-PA 23..184 10..174 267 36.1 Plus
Dwil\GK18273-PA 243 GK18273-PA 41..243 10..211 261 33 Plus
Dwil\GK14858-PA 230 GK14858-PA 9..174 10..181 256 36.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21097-PA 213 GE21097-PA 1..213 1..213 1135 99.1 Plus
Dyak\GE19072-PA 213 GE19072-PA 8..167 10..174 268 41 Plus
Dyak\GE19031-PA 239 GE19031-PA 37..239 10..211 267 34 Plus
Dyak\GE18380-PA 223 GE18380-PA 9..174 10..181 256 36.8 Plus
Dyak\GE20724-PA 219 GE20724-PA 23..184 10..174 255 34.9 Plus