Clone RE70695 Report

Search the DGRC for RE70695

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:706
Well:95
Vector:pFlc-1
Associated Gene/TranscriptCG31808-RC
Protein status:RE70695.pep: gold
Sequenced Size:1941

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5996 2002-01-01 Sim4 clustering to Release 2
CR31808 2008-08-15 Release 5.9 accounting
CR31808 2008-12-18 5.12 accounting

Clone Sequence Records

RE70695.complete Sequence

1941 bp (1941 high quality bases) assembled on 2002-05-23

GenBank Submission: AY118418.1

> RE70695.complete
AGTTACTTGTTGCTCGCTCTCTCGTTGGCTCCCTCTCTCAATGAGCGCTG
GTTGGGGCAATGGCAATTGTGGCTGCTGCTCAGCTTGGCGTTTTCATTCA
ATCAGCTGAGTTCGCCGCGTTCGGTTTTCCCGCTGCCGATTCTGTTCACC
GTTACACCGATCGAATATTACGCGTCTTGCGTCTGTAAAGGAACTGAAAC
GCACCAGTTTTTGAGTTGGAAAATATCCCCAAAACAACAAGACTCGGCGA
GAACGGAAAATTTGTTTGCTGCTTGTCACCTTCGAAAGTTATGTGTTCTG
GCCTTTACCACTACTGAAATTTCTAGAGCGTTTCGGTCAGGGCCTACCTA
GCTGAATCCAAAAAAAGGCAAGAAAGCTACAGGGCAGCCACCAGAAAGGA
GCTGCCAACTTGCATATTACGCTTGTGCGTTTCGTTCGTTCCACGCTTGT
GACCCGTAGCCCACGTCCACTTTTGTGGCGTGTGCAATCCAAAAGCCGCC
AAGACGACTTACTCGATAATGAAGATGAGCTCGCCCAGGATCATGCAGCA
GAAACGGAGCAGCAAGTCCTCCAATTCGTCGCGGGTCTCCATGACCACCT
CGACGGCGGAGGAGAATCTCATAGAATCGAAGCTCTTCAGCTGGATGCGT
CTATTCCGATTCGCCTCGCTGCTCTGCCGCGCCGAGTAACGGAGTTAGTC
CATAAGATCGAAATACCCTCGATATCCTGTCCTCCTCCCAAGTGAAAAGA
AACCACAAATTTTAAGATATGTAAATGCATATGTCAGATACTCGAACTAG
TTGCCGCTTTTCAGTCAAGTTTTCCTATATATAATGAGACACCAACAGAA
ACACCAAACTAATGTCACCCAAACTTTTCCAGCAATGTAGAGAATAAGCA
TTACAAAATGAGTAAACAGAAATACCATGTTAAGTTTAAGCTGAAAAGCT
GGGAATGTCAAACCCTTGGAGTCCAATATTTAATTTACTGTCCTTTTTTG
GGAAATCGAAAACCATTTCGTTCAGTTAGCTCTTCACAATTAAGTCAATT
TTTAGTGTAAATTCCGTTGAAACGGAATTTCTCGCGCCTTTCGTACCTTT
TGTATTGTAATAAGTCAAAAAGAAGATAAGACACATACAAATTGCAAACT
ACAAGCAAATAAATATTAAATCATAATCCACTTATTGCGTTTATTCGGGT
TTATTAGTGCTTAAGTTTCGAGAACAGCCGACTACAACACGAGGTATATA
TATTTTTGTAATTACAACACTGTTTTGCGTGTCACAAAATGGAAATACAC
ACGAGTAGGAGGAACATCAAGAGAATCGTTTATGCAAGGCTATTAACTAG
ATAAATACATATATTAACTAAAGAAGCGAACAAAAATGCAGTACTAACAA
TTACAATACAATGTATACATGTAGAGGAATATATTTACACATCAAACTCG
AATCGGAGTCTATGCAAATGCGCTTATCCAATAAAGATTAACACAAATTC
ACAATAGTTATCCAAGCCCAGCAATATGAGAAGTGCATTTAACCCAAAGA
AGTTGCCAAACGACAGCAATTGTTTTTAATACATTAGCAATGCAAAAACA
CAATAGTGAAACAATTATCTTTATTTCTGTAAAACCTCAGAACGTACTAT
AAATCAATGAAATAACTACGACAACAAAGAACAAATACAGTTATCAGAGA
TTTTCCAAATTCAATTTTACTTATTAATTAGTTAGTAAGCCAAAATGCAA
CCGTGCAACTTGAACATAACGGTACTAACGGTAATATCGGTAGTAGCGGT
AAATGCCAATACAAAGAGAAAACTGTACTAGAACATAGCAATATCACTGC
AGCAGATGTTTGTTGAGAAAAATGCAATAAATCGATATCGGTCAATAAAT
AAAGTCTTTAAGCTGTTGAGTGTTCAAAAAAAAAAAAAAAA

RE70695.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
nc_DMG2-MB6.chr2L.17.058.b 1857 nc_DMG2-MB6.chr2L.17.058.b 1..1850 78..1927 9250 100 Plus
nc_DMG2-MB6.chr2L.17.058.d 1506 nc_DMG2-MB6.chr2L.17.058.d 1..1506 78..1583 7530 100 Plus
nc_DMG2-MB6.chr2L.17.058.c 587 nc_DMG2-MB6.chr2L.17.058.c 1..587 391..977 2935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16702995..16704499 1925..421 7525 100 Minus
chr2L 23010047 chr2L 16714474..16714894 421..1 2090 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CR31808-RA 1830 CR31808-RA 1..1830 96..1925 9150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16704284..16705790 1927..421 7535 100 Minus
2L 23513712 2L 16715771..16716191 421..1 2090 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16704284..16705790 1927..421 7535 100 Minus
2L 23513712 2L 16715771..16716191 421..1 2090 99.7 Minus
Blast to na_te.dros performed 2019-03-15 14:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 3452..3543 1687..1778 126 62.4 Plus

RE70695.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:30:27 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16702995..16704498 422..1925 100 <- Minus
chr2L 16714474..16714894 1..421 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:37:56 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
CG31808-RD 1..171 519..689 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:31:09 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
CG31808-RC 1..171 519..689 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:29:39 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
CG10996-RA 325..343 846..864 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:00:18 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
CG31808-RC 1..171 519..689 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:14:15 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
CR31808-RA 1..1830 96..1925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:49:13 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 1..334 1..334 99   Minus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:37:56 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
CG31808-RC 1..1925 1..1925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:31:09 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
CG31808-RC 5..1929 1..1925 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:29:39 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-d-RA 1..334 1..334 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:00:18 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
CG31808-RC 5..1929 1..1925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:27 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16704286..16705789 422..1925 100 <- Minus
2L 16715771..16716191 1..421 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:27 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16704286..16705789 422..1925 100 <- Minus
2L 16715771..16716191 1..421 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:30:27 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16704286..16705789 422..1925 100 <- Minus
2L 16715771..16716191 1..421 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:31:09 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16704286..16705789 422..1925 100 <- Minus
arm_2L 16715771..16716191 1..421 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:11 Download gff for RE70695.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16704286..16705789 422..1925 100 <- Minus
2L 16715771..16716191 1..421 99   Minus

RE70695.hyp Sequence

Translation from 0 to 350

> RE70695.hyp
SCLLLALSLAPSLNERWLGQWQLWLLLSLAFSFNQLSSPRSVFPLPILFT
VTPIEYYASCVCKGTETHQFLSWKISPKQQDSARTENLFAACHLRKLCVL
AFTTTEISRAFRSGPT*
Sequence RE70695.hyp has no blast hits.

RE70695.pep Sequence

Translation from 518 to 688

> RE70695.pep
MKMSSPRIMQQKRSSKSSNSSRVSMTTSTAEENLIESKLFSWMRLFRFAS
LLCRAE*

RE70695.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24373-PA 56 GF24373-PA 1..56 1..56 213 92.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20116-PA 56 GG20116-PA 1..56 1..56 272 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10363-PA 54 GH10363-PA 1..54 3..56 260 98.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31808-PC 56 CG31808-PC 1..56 1..56 273 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21355-PA 56 GI21355-PA 1..56 1..56 258 92.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19341-PA 54 GL19341-PA 1..54 3..56 262 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25924-PA 306 GA25924-PA 1..54 3..56 264 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17166-PA 56 GM17166-PA 1..56 1..56 272 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21904-PA 54 GD21904-PA 1..54 3..56 260 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11150-PA 94 GJ11150-PA 39..94 1..56 272 98.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18179-PA 59 GK18179-PA 1..59 1..56 199 81.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13172-PA 56 GE13172-PA 1..56 1..56 272 100 Plus