Clone RE70722 Report

Search the DGRC for RE70722

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:707
Well:22
Vector:pFlc-1
Associated Gene/TranscriptCG12082-RA
Protein status:RE70722.pep: gold
Preliminary Size:2484
Sequenced Size:2798

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12082 2002-01-01 Sim4 clustering to Release 2
CG12082 2002-06-10 Blastp of sequenced clone
CG12082 2003-01-01 Sim4 clustering to Release 3
CG12082 2008-04-29 Release 5.5 accounting
CG12082 2008-08-15 Release 5.9 accounting
CG12082 2008-12-18 5.12 accounting

Clone Sequence Records

RE70722.complete Sequence

2798 bp (2798 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121697

> RE70722.complete
AGTATTGAATAAACAACGATAGCCTGCAGCAGTCAAATTAAACTAATTGT
GCTTATTGGGCGGCCAAATACGTAAATATCACTCAAAAGCCGTTATAAGG
TACAAAAATAAGGCAGCTGCAAAAAAAATCAACTATACTATTTTACATTC
GGTCCGTAAAGTTTATGAGAAAAGAGCTGCCTACAGGATTCCAGATACCG
TTATGGAGGAACTACGCAAGCATTTATCCAAGGTGAACGTGCCATGCGCA
TCCGGGGCGGGCAGTCCTCCCATCTACAAGGACGAGTGCGTCTACTCCTA
TGACAATCCCGAGACGCCCACCGGTTTGTACGTGTGCCTGCACAGCTTTT
TGGGCTTCGGCGAGGCGTATGTGCGGGAGTATGCCGACAAGACCGGCAAC
CGGGTCTTCCTCCACATCCAGCGGGTGAAGACGATCAAGGAGGGCGCCGA
CATGGAGGCCGAATGCGCGGAGTCGGAGGCAGGACCGGAACGGAAGATCA
CCCGCCTGGCCATTGGCGTCGAGGGCGGCTACAACGAGTCGGACATGGCC
AAGAAGTACGAGATCAAGGACACGTACAGCATCGTGGTGGCTCCGCACCT
GGATAAGAAGCTGCCCTATCCGGATCCAGAGCTGCCCATGCGTGTCACCC
AGTCGGTGGAAGCGATCCTGGCCGCCGACTCGGCAATTGCCAAGTTGGAG
AAGGCCACGCTGATGGGCACCTGGGATGGTGAAGTGCGTCAGGCGTCGAA
GTACGCAGATAACCTGCAGCAGCTGGATAATGGCAAGAGGATTCCCCCAT
CCGGCTGGCAGTGCGAGAAGTGCGACTTGACCAACAACCTCTGGCTTAAT
CTGACCGATGGTTCGATCATGTGCGGACGCAAGTTCTTTGACGGCAGTGG
CGGCAACGATCACGCCGTGGAGCACTACAGAGTAACGGGTTTCCCGCTGG
CGGTGAAACTGGGCACCATCACCGCTGATGGCAAGTCGGATGTGTTCTCC
TACCCGGAGGATGAAATGGTACTCGATCCACACTTAGAGCGCCATCTCTC
CCACTTTGGCATCAACATGGCGGCGATGAAGAAGAGCGAGAAGTCGATGG
TGGAGCTAGAGTTGGACATTAACCAGCGCATCGGCGAGTGGACGGCGCTT
ACGGAGAGCGAAAGTGAGCTGCAGCCTGTTGCTGGTCCTGGATACACTGG
CATGCGCAATCTGGGCAACTCCTGCTACATAAACAGCGTGATGCAAGTGC
TCTTCGTCATCCCAGACTTCCAGCAGCGGTTCGTGGGCACTGGAGCGGAA
CGCTATTTCAAAGAGTTTCCCAGCGACCCGGCCAACGACTTCAATATTCA
AATGGCCAAGCTGGGAACTGGTCTGCAGTCGGGAAAGTACAGCAGTATTG
CCGAGAACACTTTGGACACCGATCACAGCACCGGAATATCGCCGGCCATG
TTTAAGAACATTGTGGGCAAGAATCACCCAGATTTCAGCACCAAACAGCA
GCAAGATGCCAACGATTTCTATCTGCATTTGCTCACCCTGCTGGACAGGA
ATTCGCGGAACCAAACAAATCCCGCAGATGCTCTAAAGTTCCTGCTGGAG
GATCGCGTTGAGTGTCTGGCCAGCCACAAGGTGAAGTACAATACCCGCGA
GGAATACAGCTTCCGTCTGCCTGTTCCGTTGGACAAGGCCACCAATCTGG
ATGAGGTGCGGGAGTTCCAGGAGCGTAAGAAGGCGGCCCGCGAGACCGGA
CAACGGCTTCCGGATCGCGACATCGTGAGGCACAAGGTGCCTCTACAGGC
ATGCCTGGAAAGGTTTTTCGGCCCGGAGCTGATCGAGCAATTCTACTCCA
CTGCCATCGGGTCCAAGACGAATGCCAGGAAAATTACGCGATTGGCCACC
ATGCCCGACTGCCTGATGATTCACGTGGGAAAGTTCACGCTGGGCGACGA
CTGGGTGCCCAAGAAACTGGACGTTTCCGTAGACATGCCCGATGAACTGG
ATCTAAGTAACTGGCGCTCCGCTGGTGGCTTGCAGCCTGGTGAGGAGGCT
CTTCCCGAGCCCGCCACAGAGGAGGTGAAGTTTGCATTTGACGAGGCGGT
CATGTCCGAGTTGCTGACCATGGGTTTTCCACCGGAAGCCTGCAAGCGTG
CTTGCTATCACACCAAAAACAGCGGACTTGAGGCAGCCTCCAACTGGTTG
ATGGAGCACATCGCCGACGAGGATATCTCGGAGCCCTTTGTGGTGCCGAA
CAACAGCATTGGAGACTGCGCCGCCAACCAGTTTGTGGCCAATCCCGAGA
GCCTGGCCATGCTCATGAGCATGGGCTTCGACGAAAGACAGGCGGTGGCT
GCTCTGAAAGCGACCGATGGCAATGTGGAGCGCGCCACCGACTGGATCTT
CTCGCACGCCGATTCAATTGGTGTTGAGGATGCTGCCCCCGCTGCGAATT
CATCAGCTGCAGCGGCCTCCTCGACGCCAAATAAGACCAACTACCGCGAT
GGCCGCGGCAAGTATCGCCTGGTGGCATTCATCTCACACATGGGCACCTC
CGCCCAGGTGGGACACTACGTTTGTCACATTCGCAAGAAGGGCGAATGGG
TGATCTTCAACGATAGCAAGGTGGCCAAGTCGCAGAACCCACCCAAGGAC
CTCGGCTATCTGTATCTGTATATGCGCGAACAGTAGCCAGCCCGATCTCA
GTCCAATCCGAATCACCCCAGTCCCACAAGCTAATATTATTCGCCCTGAA
GAATGGAATTTAATAATAAAGTACATAAACAGAAAAAAAAAAAAAAAA

RE70722.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12082-RA 2960 CG12082-RA 108..2889 1..2782 13910 100 Plus
CG12082.a 2737 CG12082.a 109..2734 157..2782 13115 99.9 Plus
CG12082.a 2737 CG12082.a 1..113 1..113 565 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3144851..3146917 2782..716 10095 99.2 Minus
chr3L 24539361 chr3L 3146977..3147581 717..113 3010 99.8 Minus
chr3L 24539361 chr3L 3147695..3147807 113..1 550 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3145405..3147471 2782..716 10335 100 Minus
3L 28110227 3L 3147531..3148135 717..113 3025 100 Minus
3L 28110227 3L 3148249..3148361 113..1 565 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3145405..3147471 2782..716 10335 100 Minus
3L 28103327 3L 3147531..3148135 717..113 3025 100 Minus
3L 28103327 3L 3148249..3148361 113..1 565 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:39:43 has no hits.

RE70722.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:40:53 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3144851..3146916 717..2782 99 <- Minus
chr3L 3146978..3147580 114..716 99 <- Minus
chr3L 3147695..3147807 1..113 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:02 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12082-RA 1..2484 203..2686 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:43 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12082-RA 1..2484 203..2686 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:06:51 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12082-RA 1..2484 203..2686 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:16:12 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12082-RA 1..2484 203..2686 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:02 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12082-RA 1..2484 203..2686 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:53:45 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12082-RA 1..2779 4..2782 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:43 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12082-RA 1..2779 4..2782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:51 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12082-RA 1..2779 4..2782 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:16:13 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12082-RA 1..2779 4..2782 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:02 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12082-RA 1..2779 4..2782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:40:53 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3145405..3147470 717..2782 100 <- Minus
3L 3147532..3148134 114..716 100 <- Minus
3L 3148249..3148361 1..113 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:40:53 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3145405..3147470 717..2782 100 <- Minus
3L 3147532..3148134 114..716 100 <- Minus
3L 3148249..3148361 1..113 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:40:53 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3145405..3147470 717..2782 100 <- Minus
3L 3147532..3148134 114..716 100 <- Minus
3L 3148249..3148361 1..113 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:51 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3145405..3147470 717..2782 100 <- Minus
arm_3L 3147532..3148134 114..716 100 <- Minus
arm_3L 3148249..3148361 1..113 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:49:28 Download gff for RE70722.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3145405..3147470 717..2782 100 <- Minus
3L 3147532..3148134 114..716 100 <- Minus
3L 3148249..3148361 1..113 100   Minus

RE70722.pep Sequence

Translation from 202 to 2685

> RE70722.pep
MEELRKHLSKVNVPCASGAGSPPIYKDECVYSYDNPETPTGLYVCLHSFL
GFGEAYVREYADKTGNRVFLHIQRVKTIKEGADMEAECAESEAGPERKIT
RLAIGVEGGYNESDMAKKYEIKDTYSIVVAPHLDKKLPYPDPELPMRVTQ
SVEAILAADSAIAKLEKATLMGTWDGEVRQASKYADNLQQLDNGKRIPPS
GWQCEKCDLTNNLWLNLTDGSIMCGRKFFDGSGGNDHAVEHYRVTGFPLA
VKLGTITADGKSDVFSYPEDEMVLDPHLERHLSHFGINMAAMKKSEKSMV
ELELDINQRIGEWTALTESESELQPVAGPGYTGMRNLGNSCYINSVMQVL
FVIPDFQQRFVGTGAERYFKEFPSDPANDFNIQMAKLGTGLQSGKYSSIA
ENTLDTDHSTGISPAMFKNIVGKNHPDFSTKQQQDANDFYLHLLTLLDRN
SRNQTNPADALKFLLEDRVECLASHKVKYNTREEYSFRLPVPLDKATNLD
EVREFQERKKAARETGQRLPDRDIVRHKVPLQACLERFFGPELIEQFYST
AIGSKTNARKITRLATMPDCLMIHVGKFTLGDDWVPKKLDVSVDMPDELD
LSNWRSAGGLQPGEEALPEPATEEVKFAFDEAVMSELLTMGFPPEACKRA
CYHTKNSGLEAASNWLMEHIADEDISEPFVVPNNSIGDCAANQFVANPES
LAMLMSMGFDERQAVAALKATDGNVERATDWIFSHADSIGVEDAAPAANS
SAAAASSTPNKTNYRDGRGKYRLVAFISHMGTSAQVGHYVCHIRKKGEWV
IFNDSKVAKSQNPPKDLGYLYLYMREQ*

RE70722.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10220-PA 826 GF10220-PA 1..826 1..827 4072 90.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14479-PA 828 GG14479-PA 1..828 1..827 4314 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15672-PA 821 GH15672-PA 1..820 1..826 3651 81.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Usp5-PC 827 CG12082-PC 1..827 1..827 4362 100 Plus
Usp5-PB 827 CG12082-PB 1..827 1..827 4362 100 Plus
Usp5-PA 827 CG12082-PA 1..827 1..827 4362 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12716-PA 822 GI12716-PA 1..822 1..827 3735 83.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20751-PA 532 GL20751-PA 3..499 232..722 2341 86.9 Plus
Dper\GL10678-PA 113 GL10678-PA 1..110 1..108 459 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11383-PA 829 GA11383-PA 1..829 1..827 3903 85.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14081-PA 826 GM14081-PA 1..826 1..827 4358 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13355-PA 826 GD13355-PA 1..826 1..827 4345 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12705-PA 828 GJ12705-PA 1..828 1..827 3720 83.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18032-PA 830 GK18032-PA 1..830 1..827 3829 86.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21667-PA 828 GE21667-PA 1..828 1..827 4332 96.5 Plus

RE70722.hyp Sequence

Translation from 202 to 2685

> RE70722.hyp
MEELRKHLSKVNVPCASGAGSPPIYKDECVYSYDNPETPTGLYVCLHSFL
GFGEAYVREYADKTGNRVFLHIQRVKTIKEGADMEAECAESEAGPERKIT
RLAIGVEGGYNESDMAKKYEIKDTYSIVVAPHLDKKLPYPDPELPMRVTQ
SVEAILAADSAIAKLEKATLMGTWDGEVRQASKYADNLQQLDNGKRIPPS
GWQCEKCDLTNNLWLNLTDGSIMCGRKFFDGSGGNDHAVEHYRVTGFPLA
VKLGTITADGKSDVFSYPEDEMVLDPHLERHLSHFGINMAAMKKSEKSMV
ELELDINQRIGEWTALTESESELQPVAGPGYTGMRNLGNSCYINSVMQVL
FVIPDFQQRFVGTGAERYFKEFPSDPANDFNIQMAKLGTGLQSGKYSSIA
ENTLDTDHSTGISPAMFKNIVGKNHPDFSTKQQQDANDFYLHLLTLLDRN
SRNQTNPADALKFLLEDRVECLASHKVKYNTREEYSFRLPVPLDKATNLD
EVREFQERKKAARETGQRLPDRDIVRHKVPLQACLERFFGPELIEQFYST
AIGSKTNARKITRLATMPDCLMIHVGKFTLGDDWVPKKLDVSVDMPDELD
LSNWRSAGGLQPGEEALPEPATEEVKFAFDEAVMSELLTMGFPPEACKRA
CYHTKNSGLEAASNWLMEHIADEDISEPFVVPNNSIGDCAANQFVANPES
LAMLMSMGFDERQAVAALKATDGNVERATDWIFSHADSIGVEDAAPAANS
SAAAASSTPNKTNYRDGRGKYRLVAFISHMGTSAQVGHYVCHIRKKGEWV
IFNDSKVAKSQNPPKDLGYLYLYMREQ*

RE70722.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12082-PB 827 CG12082-PB 1..827 1..827 4362 100 Plus
CG12082-PA 827 CG12082-PA 1..827 1..827 4362 100 Plus