Clone RE70727 Report

Search the DGRC for RE70727

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:707
Well:27
Vector:pFlc-1
Associated Gene/TranscriptHph-RC
Protein status:RE70727.pep: gold
Preliminary Size:1049
Sequenced Size:2508

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14665 2002-01-01 Sim4 clustering to Release 2
CG31543 2002-03-20 Blastp of sequenced clone
Hph 2008-04-29 Release 5.5 accounting
Hph 2008-08-15 Release 5.9 accounting
Hph 2008-12-18 5.12 accounting

Clone Sequence Records

RE70727.complete Sequence

2508 bp (2508 high quality bases) assembled on 2002-03-20

GenBank Submission: AY094896

> RE70727.complete
ACATGTCAATCGCTGCACGCTAAGTATCGGTCGACGCCCATCGCTATCAA
AAAGAAATTTTAGTGCTGAGTTAAGAATTTTTCCCTTTTTTTGCACAGTT
TACGCGGTTTTTATAAACAAGGGGCGTAATAGAGCTCAAGGCAGGGTATA
AAACAGTCAATAGGGTTAAAAGTTGCAACCCTAAAACGTCTTACAAAAGA
GAATACTCGCAGGAAAAACCAACAACAATGCACATATAGCTGCCCGTGCG
TCTGTGTGTGTGCGTTGTATGTGCGTTTTTTTTTGTTTATTTGGCAAATT
CGGTGGCCTACGTGATTAAAATAAGCACAAACAGTCTTAAGTGAAATGTT
GGCTAAAACGCCCGAGTGCCGTAATTCGCATTGATAACAAATAGCCATAA
TCTGCGAGCGTGTGTGTGTGTGATTGCCTCAGTTGGCGTAGGTGAGGTGG
GGTAAAAAAAGCTGGGAGAGCTGTCAAGGTTAAAATCGGTCGTCGCCTTT
GGCTCTCCTCTCCCGCAAAATGCAATGAGCAGGGGTCGCGGAAAGGTCAG
GGATTCAGCAAGCCATTCCGGCTCCCACTCCGCATCCAAATCGGCCATGG
ACCCGCCGCGCTGCTCCATCTGCGGCACTCAGCAGCAACTACTGCGCTGC
GCCAAGTGCAAGGCCGTCTACTACTGCTCCCCCGCCCACCAGCATCTCCA
TTGGCCCGACCACCGCACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCA
ACAGCAGCAACAACAATAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTG
CAACAAGCTGTGGCATCTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAA
CTGCTCCACCGCCCAGATGATGACGCCTGCCCACCAGGCGCAGAGTTGGC
CCGCCGAGGTAGACAACCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAG
GAGAAGGCTGCAGCTGCGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCA
CCAGCATCATCACCATAATGGCGAAAAGAGCTCCAGCTATCAAATCGGTC
TGGCGGATGCCAGCTTCATGGGATCAGGAAGTGAGCGCCGCTATGAGGAT
CTGTGCCGTAACATCATCAGCGACATGAACCAGTATGGTCTGTCCGTGGT
GGACGACTTCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTC
GAAGCATGTACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAAC
CAGACGCCCGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAA
GATCAAGTGGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATC
TGACCAATCAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGAT
AATGGCATCTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGT
CGCTTGTTATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATC
CCCAAAAGGATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAAC
TGGGATGCGCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGG
AACCACAGTGGCGGATATTGAGCCCAAGTTTGATCGCCTGATATTCTTCT
GGTCTGACATTCGGAATCCCCACGAAGTGCAGCCCGCTCACCGTACCCGC
TATGCCATCACCGTCTGGTACTTCGATGCCAAGGAACGCGAGGAGGCCCT
CATTAGGGCCAAGCTGGAAAACAGCAAGACGAACAATCTGGCAGCTCAAG
CCCAAGCCCAACAGGCTGAACCAGACTCCACCACCACACCACCCGCAGCA
CCAGCTTCATCCGCATCCAGTCTGCCGGTTAGCATGTCCACGGGAACGGG
AGCGCTGAACGCCAATGTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAA
TATGCACGTAACCCAAGCCGACAGCGCAGCTAAAGGCAACCAAAAAGTGT
AAATTATTTTCAACCAAACACACATGTATAAAGCTAGTTAAAAACTATTT
ATAGCTTCGGAGGGGCGGCAGCGCAAGCCCGCATTGCGAAAGTTAATCAA
AGCTCCTTTAGTCGTTAAGCCTTCTAGTTTAGTCTCTAAGTCGTACCCTT
AGTCATTTTCGCATTAACCATTAGCTTACTGCCATGTCAGCGTCCGAGTT
GGTTGTTTATTAATTTTAGTTTGTTGCATCTTTGTCAGGACCTTTTGCCT
AGCTCATTCTTAGTTTTTGGCTGCCAAAGTATTATACCTAAAGAGAAGTT
AACTAGATTCAATAACATAAGCAACTGTCGCGACGCTCATTGCATCTTAT
CTCAAAATTATTTAACAAGCCAGTAAATCGTGGACAAACGCGGTCACTGG
CTAACACTCAATCTGTCGACTCTCATGCATCTTGTTAGACATCTTTTTCA
TATCGTTTACATCTAATAACAAACGGAAATAAATGTTTGTCCAAAAAAAA
AAAAAAAA

RE70727.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RC 2793 Hph-RC 92..2586 1..2495 12475 100 Plus
Hph.b 1584 Hph.b 67..1483 1079..2495 7085 100 Plus
Hph-RA 2341 Hph-RA 720..2134 1081..2495 7075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1082705..1083785 1..1081 5405 100 Plus
chr3R 27901430 chr3R 1093125..1094035 1582..2492 4555 100 Plus
chr3R 27901430 chr3R 1092415..1092696 1080..1361 1410 100 Plus
chr3R 27901430 chr3R 1092926..1093066 1442..1582 705 100 Plus
chr3R 27901430 chr3R 1092781..1092866 1358..1443 430 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5257041..5258121 1..1081 5405 100 Plus
3R 32079331 3R 5267461..5268374 1582..2495 4570 100 Plus
3R 32079331 3R 5266751..5267032 1080..1361 1410 100 Plus
3R 32079331 3R 5267262..5267402 1442..1582 705 100 Plus
3R 32079331 3R 5267117..5267202 1358..1443 430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4997872..4998952 1..1081 5405 100 Plus
3R 31820162 3R 5008292..5009205 1582..2495 4570 100 Plus
3R 31820162 3R 5007582..5007863 1080..1361 1410 100 Plus
3R 31820162 3R 5008093..5008233 1442..1582 705 100 Plus
3R 31820162 3R 5007948..5008033 1358..1443 430 100 Plus
Blast to na_te.dros performed 2019-03-15 20:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2662 749..1018 141 56.6 Plus
roo 9092 roo DM_ROO 9092bp 1110..1233 1923..2053 135 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2377 961..1018 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2380 958..1015 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6841 948..1039 126 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6808 957..1039 124 64.4 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 5767..5842 2272..2199 122 65.8 Minus
TART-A 13424 TART-A 13424bp 2483..2529 286..239 120 75 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2393 949..1039 119 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6801 948..1015 116 67.6 Plus

RE70727.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:14:26 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1082705..1083785 1..1081 96 -> Plus
chr3R 1092417..1092696 1082..1361 100 -> Plus
chr3R 1092785..1092865 1362..1442 100 -> Plus
chr3R 1092927..1093066 1443..1582 100 -> Plus
chr3R 1093126..1094035 1583..2492 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:51:46 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 1..1437 525..1961 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:25:59 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 1..1437 525..1961 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:04:33 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 1..1437 525..1961 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:01:17 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 1..1437 525..1961 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:09 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 1..1437 525..1961 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:51:46 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 1..2492 1..2492 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:25:59 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 1..2492 1..2492 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:04:33 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 5..2496 1..2492 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:01:18 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 1..2492 1..2492 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:09 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 5..2496 1..2492 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:26 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5257041..5258121 1..1081 100 -> Plus
3R 5266753..5267032 1082..1361 100 -> Plus
3R 5267121..5267201 1362..1442 100 -> Plus
3R 5267263..5267402 1443..1582 100 -> Plus
3R 5267462..5268371 1583..2492 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:26 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5257041..5258121 1..1081 100 -> Plus
3R 5266753..5267032 1082..1361 100 -> Plus
3R 5267121..5267201 1362..1442 100 -> Plus
3R 5267263..5267402 1443..1582 100 -> Plus
3R 5267462..5268371 1583..2492 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:26 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5257041..5258121 1..1081 100 -> Plus
3R 5266753..5267032 1082..1361 100 -> Plus
3R 5267121..5267201 1362..1442 100 -> Plus
3R 5267263..5267402 1443..1582 100 -> Plus
3R 5267462..5268371 1583..2492 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:04:33 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1082763..1083843 1..1081 100 -> Plus
arm_3R 1092475..1092754 1082..1361 100 -> Plus
arm_3R 1092843..1092923 1362..1442 100 -> Plus
arm_3R 1092985..1093124 1443..1582 100 -> Plus
arm_3R 1093184..1094093 1583..2492 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:34:27 Download gff for RE70727.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4997872..4998952 1..1081 100 -> Plus
3R 5007584..5007863 1082..1361 100 -> Plus
3R 5007952..5008032 1362..1442 100 -> Plus
3R 5008094..5008233 1443..1582 100 -> Plus
3R 5008293..5009202 1583..2492 100   Plus

RE70727.pep Sequence

Translation from 524 to 1960

> RE70727.pep
MSRGRGKVRDSASHSGSHSASKSAMDPPRCSICGTQQQLLRCAKCKAVYY
CSPAHQHLHWPDHRTECRLLTRQKLNSSNNNKQQQRQQIQQLQQAVASAN
LECSGAGANCSTAQMMTPAHQAQSWPAEVDNLLNLLGQPGSQEKAAAAET
ETGQRQQQHQHHHHNGEKSSSYQIGLADASFMGSGSERRYEDLCRNIISD
MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV
RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH
IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG
ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF
DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL
PVSMSTGTGALNANVSSNSCATSSEICT*

RE70727.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18932-PA 334 GF18932-PA 34..334 187..478 1328 89.7 Plus
Dana\GF18931-PA 174 GF18931-PA 1..173 1..185 367 55.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12715-PA 325 GG12715-PA 34..325 187..478 1573 98.3 Plus
Dere\GG12704-PA 205 GG12704-PA 1..182 1..186 695 89.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17757-PA 462 GH17757-PA 9..462 27..478 1621 73.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PD 478 CG44015-PD 1..478 1..478 2537 100 Plus
Hph-PC 478 CG44015-PC 1..478 1..478 2537 100 Plus
Hph-PA 325 CG44015-PA 34..325 187..478 1543 100 Plus
Hph-PB 278 CG44015-PB 1..278 201..478 1468 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22545-PA 459 GI22545-PA 10..459 27..478 1818 76.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21637-PA 304 GL21637-PA 1..296 1..306 1162 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16313-PA 488 GA16313-PA 1..488 1..478 1907 79.2 Plus
Dpse\GA16313-PB 347 GA16313-PB 34..347 187..478 1371 86.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10798-PA 325 GM10798-PA 34..325 187..478 1591 99.7 Plus
Dsec\GM10797-PA 193 GM10797-PA 1..192 1..185 682 91.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19772-PA 325 GD19772-PA 34..325 187..478 1593 99.7 Plus
Dsim\GD19771-PA 192 GD19771-PA 1..191 1..185 725 92.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10149-PA 473 GJ10149-PA 12..473 29..478 1818 75.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12967-PA 493 GK12967-PA 3..433 1..437 1608 71.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25458-PA 325 GE25458-PA 34..325 187..478 1550 96.6 Plus
Dyak\GE25457-PA 248 GE25457-PA 1..175 1..185 670 85.9 Plus
Dyak\GE14665-PA 60 GE14665-PA 3..60 421..478 182 82.8 Plus

RE70727.hyp Sequence

Translation from 524 to 1960

> RE70727.hyp
MSRGRGKVRDSASHSGSHSASKSAMDPPRCSICGTQQQLLRCAKCKAVYY
CSPAHQHLHWPDHRTECRLLTRQKLNSSNNNKQQQRQQIQQLQQAVASAN
LECSGAGANCSTAQMMTPAHQAQSWPAEVDNLLNLLGQPGSQEKAAAAET
ETGQRQQQHQHHHHNGEKSSSYQIGLADASFMGSGSERRYEDLCRNIISD
MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV
RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH
IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG
ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF
DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL
PVSMSTGTGALNANVSSNSCATSSEICT*

RE70727.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PD 478 CG44015-PD 1..478 1..478 2537 100 Plus
Hph-PC 478 CG44015-PC 1..478 1..478 2537 100 Plus
Hph-PA 325 CG44015-PA 34..325 187..478 1543 100 Plus
Hph-PB 278 CG44015-PB 1..278 201..478 1468 100 Plus