BDGP Sequence Production Resources |
Search the DGRC for RE70727
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 707 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Hph-RC |
Protein status: | RE70727.pep: gold |
Preliminary Size: | 1049 |
Sequenced Size: | 2508 |
Gene | Date | Evidence |
---|---|---|
CG14665 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31543 | 2002-03-20 | Blastp of sequenced clone |
Hph | 2008-04-29 | Release 5.5 accounting |
Hph | 2008-08-15 | Release 5.9 accounting |
Hph | 2008-12-18 | 5.12 accounting |
2508 bp (2508 high quality bases) assembled on 2002-03-20
GenBank Submission: AY094896
> RE70727.complete ACATGTCAATCGCTGCACGCTAAGTATCGGTCGACGCCCATCGCTATCAA AAAGAAATTTTAGTGCTGAGTTAAGAATTTTTCCCTTTTTTTGCACAGTT TACGCGGTTTTTATAAACAAGGGGCGTAATAGAGCTCAAGGCAGGGTATA AAACAGTCAATAGGGTTAAAAGTTGCAACCCTAAAACGTCTTACAAAAGA GAATACTCGCAGGAAAAACCAACAACAATGCACATATAGCTGCCCGTGCG TCTGTGTGTGTGCGTTGTATGTGCGTTTTTTTTTGTTTATTTGGCAAATT CGGTGGCCTACGTGATTAAAATAAGCACAAACAGTCTTAAGTGAAATGTT GGCTAAAACGCCCGAGTGCCGTAATTCGCATTGATAACAAATAGCCATAA TCTGCGAGCGTGTGTGTGTGTGATTGCCTCAGTTGGCGTAGGTGAGGTGG GGTAAAAAAAGCTGGGAGAGCTGTCAAGGTTAAAATCGGTCGTCGCCTTT GGCTCTCCTCTCCCGCAAAATGCAATGAGCAGGGGTCGCGGAAAGGTCAG GGATTCAGCAAGCCATTCCGGCTCCCACTCCGCATCCAAATCGGCCATGG ACCCGCCGCGCTGCTCCATCTGCGGCACTCAGCAGCAACTACTGCGCTGC GCCAAGTGCAAGGCCGTCTACTACTGCTCCCCCGCCCACCAGCATCTCCA TTGGCCCGACCACCGCACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCA ACAGCAGCAACAACAATAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTG CAACAAGCTGTGGCATCTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAA CTGCTCCACCGCCCAGATGATGACGCCTGCCCACCAGGCGCAGAGTTGGC CCGCCGAGGTAGACAACCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAG GAGAAGGCTGCAGCTGCGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCA CCAGCATCATCACCATAATGGCGAAAAGAGCTCCAGCTATCAAATCGGTC TGGCGGATGCCAGCTTCATGGGATCAGGAAGTGAGCGCCGCTATGAGGAT CTGTGCCGTAACATCATCAGCGACATGAACCAGTATGGTCTGTCCGTGGT GGACGACTTCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTC GAAGCATGTACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAAC CAGACGCCCGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAA GATCAAGTGGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATC TGACCAATCAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGAT AATGGCATCTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGT CGCTTGTTATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATC CCCAAAAGGATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAAC TGGGATGCGCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGG AACCACAGTGGCGGATATTGAGCCCAAGTTTGATCGCCTGATATTCTTCT GGTCTGACATTCGGAATCCCCACGAAGTGCAGCCCGCTCACCGTACCCGC TATGCCATCACCGTCTGGTACTTCGATGCCAAGGAACGCGAGGAGGCCCT CATTAGGGCCAAGCTGGAAAACAGCAAGACGAACAATCTGGCAGCTCAAG CCCAAGCCCAACAGGCTGAACCAGACTCCACCACCACACCACCCGCAGCA CCAGCTTCATCCGCATCCAGTCTGCCGGTTAGCATGTCCACGGGAACGGG AGCGCTGAACGCCAATGTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAA TATGCACGTAACCCAAGCCGACAGCGCAGCTAAAGGCAACCAAAAAGTGT AAATTATTTTCAACCAAACACACATGTATAAAGCTAGTTAAAAACTATTT ATAGCTTCGGAGGGGCGGCAGCGCAAGCCCGCATTGCGAAAGTTAATCAA AGCTCCTTTAGTCGTTAAGCCTTCTAGTTTAGTCTCTAAGTCGTACCCTT AGTCATTTTCGCATTAACCATTAGCTTACTGCCATGTCAGCGTCCGAGTT GGTTGTTTATTAATTTTAGTTTGTTGCATCTTTGTCAGGACCTTTTGCCT AGCTCATTCTTAGTTTTTGGCTGCCAAAGTATTATACCTAAAGAGAAGTT AACTAGATTCAATAACATAAGCAACTGTCGCGACGCTCATTGCATCTTAT CTCAAAATTATTTAACAAGCCAGTAAATCGTGGACAAACGCGGTCACTGG CTAACACTCAATCTGTCGACTCTCATGCATCTTGTTAGACATCTTTTTCA TATCGTTTACATCTAATAACAAACGGAAATAAATGTTTGTCCAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1082705..1083785 | 1..1081 | 5405 | 100 | Plus |
chr3R | 27901430 | chr3R | 1093125..1094035 | 1582..2492 | 4555 | 100 | Plus |
chr3R | 27901430 | chr3R | 1092415..1092696 | 1080..1361 | 1410 | 100 | Plus |
chr3R | 27901430 | chr3R | 1092926..1093066 | 1442..1582 | 705 | 100 | Plus |
chr3R | 27901430 | chr3R | 1092781..1092866 | 1358..1443 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5257041..5258121 | 1..1081 | 5405 | 100 | Plus |
3R | 32079331 | 3R | 5267461..5268374 | 1582..2495 | 4570 | 100 | Plus |
3R | 32079331 | 3R | 5266751..5267032 | 1080..1361 | 1410 | 100 | Plus |
3R | 32079331 | 3R | 5267262..5267402 | 1442..1582 | 705 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 1358..1443 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 4997872..4998952 | 1..1081 | 5405 | 100 | Plus |
3R | 31820162 | 3R | 5008292..5009205 | 1582..2495 | 4570 | 100 | Plus |
3R | 31820162 | 3R | 5007582..5007863 | 1080..1361 | 1410 | 100 | Plus |
3R | 31820162 | 3R | 5008093..5008233 | 1442..1582 | 705 | 100 | Plus |
3R | 31820162 | 3R | 5007948..5008033 | 1358..1443 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2662 | 749..1018 | 141 | 56.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1233 | 1923..2053 | 135 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2377 | 961..1018 | 132 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2380 | 958..1015 | 132 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6841 | 948..1039 | 126 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6808 | 957..1039 | 124 | 64.4 | Plus |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 5767..5842 | 2272..2199 | 122 | 65.8 | Minus |
TART-A | 13424 | TART-A 13424bp | 2483..2529 | 286..239 | 120 | 75 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2393 | 949..1039 | 119 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6801 | 948..1015 | 116 | 67.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1082705..1083785 | 1..1081 | 96 | -> | Plus |
chr3R | 1092417..1092696 | 1082..1361 | 100 | -> | Plus |
chr3R | 1092785..1092865 | 1362..1442 | 100 | -> | Plus |
chr3R | 1092927..1093066 | 1443..1582 | 100 | -> | Plus |
chr3R | 1093126..1094035 | 1583..2492 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RC | 1..1437 | 525..1961 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RC | 1..1437 | 525..1961 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RC | 1..1437 | 525..1961 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RC | 1..1437 | 525..1961 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RC | 1..1437 | 525..1961 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RC | 1..2492 | 1..2492 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RC | 1..2492 | 1..2492 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RC | 5..2496 | 1..2492 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RC | 1..2492 | 1..2492 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hph-RC | 5..2496 | 1..2492 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5257041..5258121 | 1..1081 | 100 | -> | Plus |
3R | 5266753..5267032 | 1082..1361 | 100 | -> | Plus |
3R | 5267121..5267201 | 1362..1442 | 100 | -> | Plus |
3R | 5267263..5267402 | 1443..1582 | 100 | -> | Plus |
3R | 5267462..5268371 | 1583..2492 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5257041..5258121 | 1..1081 | 100 | -> | Plus |
3R | 5266753..5267032 | 1082..1361 | 100 | -> | Plus |
3R | 5267121..5267201 | 1362..1442 | 100 | -> | Plus |
3R | 5267263..5267402 | 1443..1582 | 100 | -> | Plus |
3R | 5267462..5268371 | 1583..2492 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5257041..5258121 | 1..1081 | 100 | -> | Plus |
3R | 5266753..5267032 | 1082..1361 | 100 | -> | Plus |
3R | 5267121..5267201 | 1362..1442 | 100 | -> | Plus |
3R | 5267263..5267402 | 1443..1582 | 100 | -> | Plus |
3R | 5267462..5268371 | 1583..2492 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1082763..1083843 | 1..1081 | 100 | -> | Plus |
arm_3R | 1092475..1092754 | 1082..1361 | 100 | -> | Plus |
arm_3R | 1092843..1092923 | 1362..1442 | 100 | -> | Plus |
arm_3R | 1092985..1093124 | 1443..1582 | 100 | -> | Plus |
arm_3R | 1093184..1094093 | 1583..2492 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4997872..4998952 | 1..1081 | 100 | -> | Plus |
3R | 5007584..5007863 | 1082..1361 | 100 | -> | Plus |
3R | 5007952..5008032 | 1362..1442 | 100 | -> | Plus |
3R | 5008094..5008233 | 1443..1582 | 100 | -> | Plus |
3R | 5008293..5009202 | 1583..2492 | 100 | Plus |
Translation from 524 to 1960
> RE70727.pep MSRGRGKVRDSASHSGSHSASKSAMDPPRCSICGTQQQLLRCAKCKAVYY CSPAHQHLHWPDHRTECRLLTRQKLNSSNNNKQQQRQQIQQLQQAVASAN LECSGAGANCSTAQMMTPAHQAQSWPAEVDNLLNLLGQPGSQEKAAAAET ETGQRQQQHQHHHHNGEKSSSYQIGLADASFMGSGSERRYEDLCRNIISD MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL PVSMSTGTGALNANVSSNSCATSSEICT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18932-PA | 334 | GF18932-PA | 34..334 | 187..478 | 1328 | 89.7 | Plus |
Dana\GF18931-PA | 174 | GF18931-PA | 1..173 | 1..185 | 367 | 55.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12715-PA | 325 | GG12715-PA | 34..325 | 187..478 | 1573 | 98.3 | Plus |
Dere\GG12704-PA | 205 | GG12704-PA | 1..182 | 1..186 | 695 | 89.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17757-PA | 462 | GH17757-PA | 9..462 | 27..478 | 1621 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hph-PD | 478 | CG44015-PD | 1..478 | 1..478 | 2537 | 100 | Plus |
Hph-PC | 478 | CG44015-PC | 1..478 | 1..478 | 2537 | 100 | Plus |
Hph-PA | 325 | CG44015-PA | 34..325 | 187..478 | 1543 | 100 | Plus |
Hph-PB | 278 | CG44015-PB | 1..278 | 201..478 | 1468 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22545-PA | 459 | GI22545-PA | 10..459 | 27..478 | 1818 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21637-PA | 304 | GL21637-PA | 1..296 | 1..306 | 1162 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16313-PA | 488 | GA16313-PA | 1..488 | 1..478 | 1907 | 79.2 | Plus |
Dpse\GA16313-PB | 347 | GA16313-PB | 34..347 | 187..478 | 1371 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10798-PA | 325 | GM10798-PA | 34..325 | 187..478 | 1591 | 99.7 | Plus |
Dsec\GM10797-PA | 193 | GM10797-PA | 1..192 | 1..185 | 682 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19772-PA | 325 | GD19772-PA | 34..325 | 187..478 | 1593 | 99.7 | Plus |
Dsim\GD19771-PA | 192 | GD19771-PA | 1..191 | 1..185 | 725 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10149-PA | 473 | GJ10149-PA | 12..473 | 29..478 | 1818 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12967-PA | 493 | GK12967-PA | 3..433 | 1..437 | 1608 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25458-PA | 325 | GE25458-PA | 34..325 | 187..478 | 1550 | 96.6 | Plus |
Dyak\GE25457-PA | 248 | GE25457-PA | 1..175 | 1..185 | 670 | 85.9 | Plus |
Dyak\GE14665-PA | 60 | GE14665-PA | 3..60 | 421..478 | 182 | 82.8 | Plus |
Translation from 524 to 1960
> RE70727.hyp MSRGRGKVRDSASHSGSHSASKSAMDPPRCSICGTQQQLLRCAKCKAVYY CSPAHQHLHWPDHRTECRLLTRQKLNSSNNNKQQQRQQIQQLQQAVASAN LECSGAGANCSTAQMMTPAHQAQSWPAEVDNLLNLLGQPGSQEKAAAAET ETGQRQQQHQHHHHNGEKSSSYQIGLADASFMGSGSERRYEDLCRNIISD MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL PVSMSTGTGALNANVSSNSCATSSEICT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hph-PD | 478 | CG44015-PD | 1..478 | 1..478 | 2537 | 100 | Plus |
Hph-PC | 478 | CG44015-PC | 1..478 | 1..478 | 2537 | 100 | Plus |
Hph-PA | 325 | CG44015-PA | 34..325 | 187..478 | 1543 | 100 | Plus |
Hph-PB | 278 | CG44015-PB | 1..278 | 201..478 | 1468 | 100 | Plus |