Clone RE70748 Report

Search the DGRC for RE70748

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:707
Well:48
Vector:pFlc-1
Associated Gene/TranscriptCG30151-RA
Protein status:RE70748.pep: gold
Sequenced Size:978

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30151 2002-08-23 Blastp of sequenced clone
CG30151 2003-01-01 Sim4 clustering to Release 3
CG30151 2008-04-29 Release 5.5 accounting
CG30151 2008-08-15 Release 5.9 accounting
CG30151 2008-12-18 5.12 accounting

Clone Sequence Records

RE70748.complete Sequence

978 bp (978 high quality bases) assembled on 2002-08-23

GenBank Submission: BT001730

> RE70748.complete
AGTCATCTCTTTGCGGGCTTAACAATGAGGTCGTTTTTGCTGATGATGAT
GCTGTTGCTTGGAACAAGTTGGGCACAACTTGTTTACCGGGACTATAGCT
CACAAATCGGTGGAGGATTTTATAGACCCCAAAGAGGACAATATGGACTG
ATAAGTGATGGAAGGCGGCCAGGAGGTCCATACGAAAGTACTGCTCAAGA
GGGTTTAATCTCTGGAGTGGATACGGGAGGTCCCTTTGGTAATTATGGAA
ACTACGGATCAGTAAATGGAGGACTACTTGCTACCAATCAGCAAGGAGGA
CTTATTTCTGGCGGAAGTAGTGGAGGACCCTTTGCCCAAACTGGCAGCTC
CTTTACCAAAGAAGGACTAATTTCTGATGCCAACAGTGGTGGTCCTTTTA
ACAGCAACCAAGGATTATTTGGTTTGAATAGTGGAAGCGGTCTGCTCAGT
GGAGCTAATACTGGAGGACCATTTGCCAGTGATCATCAAGGAGGTTTAAT
TTCCGGAGGAAATTCTGGAGGCCCTTTTGGAAGTGACCCATGGGCAAATA
GTAATGAAGGGACGTATGAAGGACTTATTTTTGGTGCCAATAGTGGAGGC
CCTTTTGGGAGGAATCAAGGAAGATTTCATGGCGGAGGGCTAACTAGTGG
CAGTAATACTGGAGGTCCATTTGCAAACAGAAATCAACTTGGAGGACTGA
TTGCTGGCGGAAACAGTGGAGGTCCCTTCGAAAGCAAAGAAGCGACAATC
GATCACAGTGAAGGTGGTCTAATCGAAGGAGGTAAGATAGGTGGTCCTCT
GGGCCAAAATCCAGGAGGATTAGTTACTGGAGGCAATAGTGGAGGCCCCT
TTGGACAAGCTGAAAGTAGCTAAAATAAAATAGATTTAATACGTCTCTTA
AGTCATTTAGTTAAATATCACGTCTTTCACTTGTCTGTTATCAATAAAAT
TTCAATAATGCTAAAAAAAAAAAAAAAA

RE70748.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG30151-RA 962 CG30151-RA 1..962 1..962 4810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16415289..16416250 962..1 4495 97.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20528499..20529464 966..1 4815 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20529698..20530663 966..1 4815 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 12:50:27 has no hits.

RE70748.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:51:22 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16415289..16416250 1..962 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:04 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
CG30151-RA 1..849 25..873 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:15:44 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
CG30151-RA 1..849 25..873 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:00:57 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
CG30151-RA 1..849 25..873 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:06:41 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
CG30151-RA 1..849 25..873 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:50 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
CG30151-RA 1..849 25..873 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:39:29 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
CG30151-RA 1..961 1..961 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:15:44 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
CG30151-RA 1..961 1..961 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:00:57 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
CG30151-RA 1..962 1..962 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:06:41 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
CG30151-RA 1..961 1..961 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:50 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
CG30151-RA 1..962 1..962 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:22 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20528503..20529464 1..962 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:22 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20528503..20529464 1..962 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:22 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20528503..20529464 1..962 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:00:57 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16416008..16416969 1..962 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:38:43 Download gff for RE70748.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20529702..20530663 1..962 100   Minus

RE70748.hyp Sequence

Translation from 0 to 872

> RE70748.hyp
SHLFAGLTMRSFLLMMMLLLGTSWAQLVYRDYSSQIGGGFYRPQRGQYGL
ISDGRRPGGPYESTAQEGLISGVDTGGPFGNYGNYGSVNGGLLATNQQGG
LISGGSSGGPFAQTGSSFTKEGLISDANSGGPFNSNQGLFGLNSGSGLLS
GANTGGPFASDHQGGLISGGNSGGPFGSDPWANSNEGTYEGLIFGANSGG
PFGRNQGRFHGGGLTSGSNTGGPFANRNQLGGLIAGGNSGGPFESKEATI
DHSEGGLIEGGKIGGPLGQNPGGLVTGGNSGGPFGQAESS*

RE70748.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30151-PA 282 CG30151-PA 1..282 9..290 1509 100 Plus
glo-PA 586 CG6946-PA 239..468 54..285 208 34.2 Plus
glo-PB 586 CG6946-PB 239..468 54..285 208 34.2 Plus
CG17108-PA 342 CG17108-PA 28..231 54..285 199 35.1 Plus
Cpr47Ef-PD 601 CG13214-PD 308..533 32..285 197 33.5 Plus
CG17108-PA 342 CG17108-PA 48..319 31..285 185 32.3 Plus
glo-PA 586 CG6946-PA 292..472 38..232 157 29.9 Plus
glo-PB 586 CG6946-PB 292..472 38..232 157 29.9 Plus
CG17108-PA 342 CG17108-PA 24..186 104..283 155 35.7 Plus

RE70748.pep Sequence

Translation from 24 to 872

> RE70748.pep
MRSFLLMMMLLLGTSWAQLVYRDYSSQIGGGFYRPQRGQYGLISDGRRPG
GPYESTAQEGLISGVDTGGPFGNYGNYGSVNGGLLATNQQGGLISGGSSG
GPFAQTGSSFTKEGLISDANSGGPFNSNQGLFGLNSGSGLLSGANTGGPF
ASDHQGGLISGGNSGGPFGSDPWANSNEGTYEGLIFGANSGGPFGRNQGR
FHGGGLTSGSNTGGPFANRNQLGGLIAGGNSGGPFESKEATIDHSEGGLI
EGGKIGGPLGQNPGGLVTGGNSGGPFGQAESS*

RE70748.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20862-PA 196 GG20862-PA 1..185 1..206 427 57.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21069-PA 455 GH21069-PA 1..362 1..281 230 33.8 Plus
Dgri\GH21069-PA 455 GH21069-PA 194..432 58..279 210 38 Plus
Dgri\GH21069-PA 455 GH21069-PA 251..455 58..260 193 39.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30151-PA 282 CG30151-PA 1..282 1..282 1509 100 Plus
glo-PA 586 CG6946-PA 239..468 46..277 208 34.2 Plus
glo-PB 586 CG6946-PB 239..468 46..277 208 34.2 Plus
CG17108-PA 342 CG17108-PA 28..231 46..277 199 35.1 Plus
Cpr47Ef-PD 601 CG13214-PD 308..533 24..277 197 33.5 Plus
CG17108-PA 342 CG17108-PA 48..319 23..277 185 32.3 Plus
Cpr47Ef-PC 612 CG13214-PC 308..544 24..277 183 32.2 Plus
Cpr47Ef-PC 612 CG13214-PC 281..485 29..279 180 31.1 Plus
Muc91C-PB 949 CG7709-PB 538..768 35..282 178 28.4 Plus
Muc91C-PA 950 CG7709-PA 539..769 35..282 178 28.4 Plus
HnRNP-K-PB 413 CG13425-PB 88..297 72..274 170 30 Plus
HnRNP-K-PE 493 CG13425-PE 171..380 72..274 170 30 Plus
HnRNP-K-PF 496 CG13425-PF 171..380 72..274 170 30 Plus
HnRNP-K-PA 496 CG13425-PA 171..380 72..274 170 30 Plus
HnRNP-K-PC 502 CG13425-PC 177..386 72..274 170 30 Plus
Cpr47Ef-PC 612 CG13214-PC 236..478 38..274 168 31.2 Plus
HnRNP-K-PD 315 CG13425-PD 11..202 74..274 168 29.9 Plus
Cpr47Ef-PD 601 CG13214-PD 236..466 38..277 165 31.2 Plus
HnRNP-K-PB 413 CG13425-PB 102..333 33..247 164 33.5 Plus
HnRNP-K-PE 493 CG13425-PE 185..416 33..247 164 33.5 Plus
HnRNP-K-PF 496 CG13425-PF 185..416 33..247 164 33.5 Plus
HnRNP-K-PA 496 CG13425-PA 185..416 33..247 164 33.5 Plus
HnRNP-K-PC 502 CG13425-PC 191..422 33..247 164 33.5 Plus
HnRNP-K-PD 315 CG13425-PD 7..238 33..247 164 33.5 Plus
Cpr47Ef-PC 612 CG13214-PC 372..585 29..271 163 30.2 Plus
glo-PA 586 CG6946-PA 292..472 30..224 157 29.9 Plus
glo-PB 586 CG6946-PB 292..472 30..224 157 29.9 Plus
CG17108-PA 342 CG17108-PA 24..186 96..275 155 35.7 Plus
resilin-PB 575 CG15920-PB 351..573 33..276 155 30.7 Plus
resilin-PA 620 CG15920-PA 396..618 33..276 155 30.7 Plus
CG14191-PA 193 CG14191-PA 22..172 50..209 152 31.2 Plus
Muc91C-PB 949 CG7709-PB 608..836 25..240 151 28.9 Plus
Muc91C-PA 950 CG7709-PA 609..837 25..240 151 28.9 Plus
CG5787-PB 950 CG5787-PB 271..446 66..232 151 30.6 Plus
CG5787-PA 950 CG5787-PA 271..446 66..232 151 30.6 Plus
CG34327-PA 220 CG34327-PA 25..217 59..273 147 32 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24303-PA 139 GA24303-PA 31..135 136..238 141 43.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19787-PA 242 GM19787-PA 1..242 1..241 593 66.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25278-PA 244 GD25278-PA 1..235 1..239 702 79.2 Plus
Dsim\GD25278-PA 244 GD25278-PA 40..215 137..279 154 40.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13800-PA 324 GE13800-PA 1..269 1..282 658 58.2 Plus
Dyak\GE13800-PA 324 GE13800-PA 155..320 30..196 220 44.8 Plus