Clone RE70822 Report

Search the DGRC for RE70822

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:708
Well:22
Vector:pFlc-1
Associated Gene/TranscriptCG7945-RB
Protein status:RE70822.pep: gold
Sequenced Size:1288

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7945 2004-01-09 Blastp of sequenced clone
CG7945 2008-04-29 Release 5.5 accounting
CG7945 2008-08-15 Release 5.9 accounting
CG7945 2008-12-18 5.12 accounting

Clone Sequence Records

RE70822.complete Sequence

1288 bp (1288 high quality bases) assembled on 2004-01-09

GenBank Submission: BT011355

> RE70822.complete
ACTTTTCTTTTTTGCGGTAGTCAGACACGGTCATACAAATCCCACAATAT
AATGTTAAATTAATCATATTTATACTTATCTTCATTTAAGTAAAGCGAAA
TATTCGATTGACCCTCGAAGTAAACAACCCAGGTGCTCAAAAATGAAGCT
AACAAAGTTAGATTAATCGGTGTCTACGAATTATCTGGAAACACAAGCAT
TTCCCGTCATCTAACTCAAACTGCCCAACTCGAAAAATCAACAATATTTT
TGCATCGGGCCAAAGGTGCATTAAAACCGGAGCCTCAAGTCTCGGGCGGC
AGGTAATTTATTCAAGTTCAAAACAGCCACCCGGGGATTCTCCTAGACAT
CGGTTGCCACAAGAAAAGAAGAAGAATTAGGCGTAATCTTCTAGAAAATT
GGTGATTTCAGCCGAGAATGTTTGAGAATTTTCGAGGTATTTTTCGGAAA
CGGCGTCGCTGCGAGTCGGACACAACACCGCCGCCACCGCCGCCGCAACC
CGCCCAGGAGGCGGAGATAATAAACCGATATCCGGAAGATATAGAAGCCG
ATACGCCCGAGTCCAATGATGGCTTTGACGCCTCCTGGACCGAAGGCTCT
TTTCACAGCCCACATTCAGATAGACCATTTAACGCCAGCGAGAGATTTGT
CACCATACTGGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATG
CACTCAACCTGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTG
ATCAAGAGCAACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGA
GATCATTTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGC
TGCGTGTGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAG
ATAAATGTATTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGG
ACGCCAACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGG
ATCCATCCGGACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTC
GACAAGAAGTTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAA
GAACATCAAGAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAA
CTGTTAGCCATTAATTAAATTGTTTTTTGGTCTATTAACTATTCATAGCA
TTATTATCAAACCAAACGAAATACATCACCAAGCTAGATGAAACGAATAA
TAAAGAAAGCAGCATATACACCAAAAAAAAAAAAAAAA

RE70822.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945.b 1363 CG7945.b 1..1273 1..1273 6350 99.9 Plus
CG7945-RB 1276 CG7945-RB 1..1251 23..1273 6255 100 Plus
CG7945-RC 3575 CG7945-RC 1609..2239 643..1273 3155 100 Plus
CG7945-RC 3575 CG7945-RC 1..601 23..623 3005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15513450..15514072 623..1 3100 99.8 Minus
chr3L 24539361 chr3L 15511649..15512135 1272..786 2435 100 Minus
chr3L 24539361 chr3L 15512298..15512442 787..643 725 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15523512..15524134 623..1 3100 99.8 Minus
3L 28110227 3L 15521710..15522197 1273..786 2440 100 Minus
3L 28110227 3L 15522360..15522504 787..643 725 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15516612..15517234 623..1 3100 99.8 Minus
3L 28103327 3L 15514810..15515297 1273..786 2440 100 Minus
3L 28103327 3L 15515460..15515604 787..643 725 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:01:28 has no hits.

RE70822.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:02:28 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15511649..15512133 788..1272 100 <- Minus
chr3L 15512298..15512440 645..787 100 <- Minus
chr3L 15512498..15512518 624..644 100 <- Minus
chr3L 15513450..15514072 1..623 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:35:09 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 1..747 418..1164 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:43:19 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 1..747 418..1164 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:35 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 1..747 418..1164 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:32:10 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 1..747 418..1164 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:55:33 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 1..747 418..1164 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:53:25 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 1..1237 36..1272 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:43:18 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 1..1237 36..1272 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:35 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 4..1275 1..1272 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:32:10 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 1..1237 36..1272 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:55:33 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 4..1275 1..1272 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:28 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15522360..15522502 645..787 100 <- Minus
3L 15522560..15522580 624..644 100 <- Minus
3L 15521711..15522195 788..1272 100 <- Minus
3L 15523512..15524134 1..623 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:28 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15522360..15522502 645..787 100 <- Minus
3L 15522560..15522580 624..644 100 <- Minus
3L 15521711..15522195 788..1272 100 <- Minus
3L 15523512..15524134 1..623 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:28 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15522360..15522502 645..787 100 <- Minus
3L 15522560..15522580 624..644 100 <- Minus
3L 15521711..15522195 788..1272 100 <- Minus
3L 15523512..15524134 1..623 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:35 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514811..15515295 788..1272 100 <- Minus
arm_3L 15515460..15515602 645..787 100 <- Minus
arm_3L 15515660..15515680 624..644 100 <- Minus
arm_3L 15516612..15517234 1..623 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:04:45 Download gff for RE70822.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15514811..15515295 788..1272 100 <- Minus
3L 15515460..15515602 645..787 100 <- Minus
3L 15515660..15515680 624..644 100 <- Minus
3L 15516612..15517234 1..623 99   Minus

RE70822.pep Sequence

Translation from 417 to 1163

> RE70822.pep
MFENFRGIFRKRRRCESDTTPPPPPPQPAQEAEIINRYPEDIEADTPESN
DGFDASWTEGSFHSPHSDRPFNASERFVTILDSLDARVEKLRKDALNLQE
KKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTV
RDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHM
DTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSH*

RE70822.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10728-PA 353 GF10728-PA 173..353 68..248 879 91.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13543-PA 344 GG13543-PA 164..344 68..248 910 94.5 Plus
Dere\GG13543-PA 344 GG13543-PA 1..66 1..69 237 71.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16818-PA 367 GH16818-PA 187..367 68..248 831 86.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 248 CG7945-PB 1..248 1..248 1285 100 Plus
CG7945-PA 262 CG7945-PA 82..262 68..248 910 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12223-PA 259 GI12223-PA 47..258 38..247 841 77.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25595-PA 331 GL25595-PA 151..331 68..248 820 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20709-PA 331 GA20709-PA 151..331 68..248 820 85.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24486-PA 361 GM24486-PA 181..361 68..248 911 95.6 Plus
Dsec\GM24486-PA 361 GM24486-PA 1..67 1..69 245 78.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12558-PA 246 GD12558-PA 1..246 1..248 1156 91.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11453-PA 332 GJ11453-PA 152..332 68..248 830 85.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10518-PA 269 GK10518-PA 89..269 68..248 839 85.6 Plus
Dwil\GK18090-PA 215 GK18090-PA 10..214 36..247 685 65.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22844-PA 262 GE22844-PA 82..262 68..248 911 93.9 Plus
Dyak\GE19846-PA 262 GE19846-PA 82..262 68..248 911 93.9 Plus
Dyak\GE19845-PA 69 GE19845-PA 1..69 1..69 231 75.7 Plus
Dyak\GE22843-PA 71 GE22843-PA 1..71 1..69 221 74.6 Plus

RE70822.hyp Sequence

Translation from 417 to 1163

> RE70822.hyp
MFENFRGIFRKRRRCESDTTPPPPPPQPAQEAEIINRYPEDIEADTPESN
DGFDASWTEGSFHSPHSDRPFNASERFVTILDSLDARVEKLRKDALNLQE
KKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTV
RDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHM
DTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSH*

RE70822.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 248 CG7945-PB 1..248 1..248 1285 100 Plus
CG7945-PA 262 CG7945-PA 82..262 68..248 910 100 Plus